Diversity of fungi in creosote-treated crosstie wastes and their resistance to polycyclic aromatic hydrocarbons

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 97, Issue 4, 2010, Pages 377-387

  Kim, Min Ji ^a   Lee, Hwanhwi ^a   Choi, Yong Seok ^a   Kim, Gyu Hyeok ^a   Huh, Na Yoon ^a   Lee, Sangjoon ^a   Lim, Young Woon ^b   Lee, Sung Suk ^c   Kim, Jae Jin ^a  

^a Korea University   (South Korea)

^b National Institute of Biological Resources   (South Korea)

^c Korea Forest Research Institute   (South Korea)

Author keywords

Creosote treated wood; Crosstie waste; Fungal diversity; Polycyclic aromatic hydrocarbons; White rot fungi

Indexed keywords

ACENAPHTHENE DERIVATIVE; ACENAPHTHYLENE; ANTHRACENE; BENZ[A]ANTHRACENE; BENZO[A]PYRENE; BENZO[B]FLUORANTHENE; BENZO[GHI]PERYLENE; BENZO[K]FLUORANTHENE; CHRYSENE; CREOSOTE; DIBENZ[A,H]ANTHRACENE; FLUORANTHENE; FLUORENE; INDENO[1,2,3 CD]PYRENE; NAPHTHALENE; PHENANTHRENE; POLYCYCLIC AROMATIC HYDROCARBON; PYRENE;

ALTERNARIA ALTERNATA; ARTICLE; ASCOMYCETES; BASIDIOMYCETES; FUNGAL STRAIN; FUNGUS GROWTH; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; HETEROBASIDION ANNOSUM; MICROBIAL DIVERSITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RHIZOMUCOR; RHIZOMUCOR VARIABILIS; SCHIZOPHYLLUM COMMUNE; SOIL DEGRADATION; ZYGOMYCETES;

ANTIFUNGAL AGENTS; BIODIVERSITY; CLUSTER ANALYSIS; CREOSOTE; DNA, FUNGAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; FUNGI; GENES, RRNA; INDUSTRIAL WASTE; KOREA; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYCYCLIC HYDROCARBONS, AROMATIC; RNA, FUNGAL; RNA, RIBOSOMAL, 28S; SEQUENCE ANALYSIS, DNA; WOOD;

ALTERNARIA ALTERNATA; ASCOMYCOTA; BASIDIOMYCOTA; FUNGI; HETEROBASIDION ANNOSUM; IRPEX LACTEUS; RHIZOMUCOR VARIABILIS; SCHIZOPHYLLUM COMMUNE; ZYGOMYCETES;

EID: 77951667106     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-010-9416-6     Document Type: Article

References (47)

1. SF Altschul MS Boguski W Gish JC Wootton 1994 Issues in searching molecular sequence databases Nat Genet 6 119 129 10.1038/ng0294-119 1:CAS:528:DyaK2cXitFKju7c%3D 8162065 (Pubitemid 24188591)
2. BE Arenz BW Held JA Jurgens RL Farrell RA Blanchette 2006 Fungal diversity in soils and historic wood from the Ross Sea region of Antarctica Soil Biol Biochem 38 3057 3064 10.1016/j.soilbio.2006.01.016 1:CAS:528: DC%2BD28XpvFegu7o%3D (Pubitemid 44429924)
3. HI Atagana 2003 Bioremediation of creosote-contaminated soil: a pilot-scale land farming evaluation World J Microbiol Biotechnol 19 571 581 10.1023/A:1025160126635 1:CAS:528:DC%2BD3sXmt1agtrs%3D (Pubitemid 37089992)
4. HI Atagana RJ Haynes FM Wallis 2006 Fungal bioremediation of creosote-contaminated soil: a laboratory scale bioremediation study using indigenous soil fungi Water Air Soil Pollut 172 201 219 10.1007/s11270-005-9074- x 1:CAS:528:DC%2BD28XjvFSgur0%3D
5. SA Balajee AM Borman ME Brandt J Cano M Cuenca-Estrella E Dannaoui J Guarro G Haase CC Kibbler W Meyer K O'Donnell CA Petti JL Rodriguez-Tudela D Sutton A Velegraki BL Wickes 2009 Sequence-based identification of Aspergillus, Fusarium, and Mucorales species in the clinical mycology laboratory: where are we and where should we go from here? J Clin Microbiol 47 877 884 10.1128/JCM.01685-08 1:CAS:528:DC%2BD1MXlvVams7c%3D 19073865
6. SM Bamforth I Singleton 2005 Bioremediation of polycyclic aromatic hydrocarbons: current knowledge and future directions J Chem Technol Biotechnol 80 723 736 10.1002/jctb.1276 1:CAS:528:DC%2BD2MXlvFSlurs%3D (Pubitemid 40903202)
7. CZ Blumenthal 2004 Production of toxic metabolites in Aspergillus niger, Aspergillus oryzae, and Trichoderma reesei: justification of mycotoxin testing in food grade enzyme preparations derived from the three fungi Regul Toxicol Pharmacol 39 214 228 10.1016/j.yrtph.2003.09.002 1:CAS:528:DC%2BD2cXisVSlur8%3D 15041150 (Pubitemid 38388202)
8. JA Butcher 1968 The ecology of fungi infecting untreated and preservative treated sapwood of Pinus radiata Can J Bot 46 1577 1589 10.1139/b68-219
9. T Cajthaml P Erabanová A Kollmann Č Novotnỳ V Šašek C Mougin 2008 Degradation of PAHs by ligninolytic enzymes of Irpex lacteus Folia Microbiol 53 289 294 10.1007/s12223-008-0045-7 1:CAS:528:DC%2BD1cXhtVGgtLzP
10. JA Camargo 1993 Must dominance increase with the number of subordinate species in competitive interactions? J Theor Biol 161 537 542 10.1006/jtbi.1993.1072 (Pubitemid 23246977)
11. PJ Collins MJJ Kotterman JA Field ADW Dobson 1996 Oxidation of anthracene and benzo[a]pyrene by laccases from Trametes versicolor Appl Environ Microbiol 62 4563 4567 1:CAS:528:DyaK28Xnt1anu7c%3D 16535468
12. DV Cortés-Espinosa FJ Fernández-Perrino A Arana-Cuenca F Esparza-García O Loera RR Rodríguez-Vázquez 2006 Selection and identification of fungi isolated from sugarcane bagasse and their application for phenanthrene removal from soil J Environ Sci Heal A 41 475 486
13. Duncan CG, Lombard EF (1965) Fungi associated with principal decays in wood products in the United States. Report No. WO-4. Department of Agriculture, Washington, DC, USA. For. Prod. Lab. USDA Forest Service, Madison
14. DJ Freeman FCR Cattell 1990 Wood burning as a source of atmospheric polycyclic aromatic hydrocarbons Environ Sci Technol 24 1581 1585 10.1021/es00080a019 1:CAS:528:DyaK3cXltlOksr4%3D
15. E Galli E Brancaleoni F Di Mario E Donati M Frattoni CM Polcaro P Rapanà 2008 Mycelium growth and degradation of creosote-treated wood by basidiomycetes Chemosphere 72 1069 1072 10.1016/j.chemosphere.2008.04.014 1:CAS:528:DC%2BD1cXns1Shs7Y%3D 18501950 (Pubitemid 44422414)
16. G Giraffa E Neviani 2001 DNA-based, culture-independent strategies for evaluating microbial communities in food-associated ecosystems Int J Food Microbiol 67 19 34 10.1016/S0168-1605(01)00445-7 1:CAS:528:DC%2BD3MXltVakurs%3D 11482566 (Pubitemid 32622129)
17. MJ Han HT Choi HG Song 2004 Degradation of phenanthrene by Trametes versicolor and its laccase J Microbiol 42 94 98 1:CAS:528:DC%2BD2cXmtl2nt7Y%3D 15357301 (Pubitemid 38952350)
18. DS Hibbett M Binder JF Bischoff M Blackwell PF Cannon OE Eriksson S Huhndorf T James PM Kirk R Lücking T Lumbsch F Lutzoni PB Matheny DJ McLaughlin MJ Powell S Redhead CL Schoch JW Spatafora JA Spalpers R Vilgalys MC Aime A Aptroot R Bauer D Begerow GL Benny LA Castlebury PW Crous Y-C Dai W Gams DM Geiser GW Griffith C Gueidan DL Hawksworth G Hestmark K Hosaka RA Humber K Hyde JE Ironside U Kõljalg CP Kurtzman K-H Larsson R Lichtwardt J Longcore J Miadlikowska A Miller J-M Moncalvo S Mozley-Standridge F Oberwinkler E Parmasto V Reeb JD Rogers C Roux L Ryvarden JP Sampaio A Schüssler J Sugiyama RG Thorn L Tibell WA Untereiner C Walker Z Wang A Weir M Weiss MM White K Winka Y Yao N Zhang 2007 A higher-level phylogenetic classification of the Fungi Mycol Res 111 504 547 (Pubitemid 46915419)
19. TR Horton TD Bruns 2001 The molecular revolution in ectomycorrhizal ecology; peeking into the black box Mol Ecol 10 1855 1871 10.1046/j.0962-1083. 2001.01333.x 1:CAS:528:DC%2BD3MXmslyhtr8%3D 11555231 (Pubitemid 32792442)
20. J Hunt L Boddy PF Randerson HJ Rogers 2004 An evaluation of 18S rDNA approaches for the study of fungal diversity in grassland soils Microb Ecol 47 385 395 10.1007/s00248-003-2018-3 1:CAS:528:DC%2BD2cXmsVSiu7c%3D 14994180 (Pubitemid 38889599)
21. I Kamei H Suhara R Kondo 2005 Phylogenetical approach to isolation of white-rot fungi capable of degrading polychlorinated dibenzo-p-dioxin Appl Microbiol Biotechnol 69 358 366 10.1007/s00253-005-0052-4 1:CAS:528: DC%2BD2MXhtlCqurfI 16133328 (Pubitemid 43014455)
22. G Kernaghan L Sigler D Khasa 2003 Mycorrhizal and root endophytic fungi of containerized Picea glauca seedlings assessed by rDNA sequence analysis Microb Ecol 45 128 136 10.1007/s00248-002-1024-1 1:CAS:528:DC%2BD3sXhvVyru7s%3D 12545311 (Pubitemid 36933317)
23. G-H Kim YW Lim Y-S Song J-J Kim 2005 Decay fungi from playground wood products in service using 28S rDNA sequence analysis Holzforsch 59 459 466 10.1515/HF.2005.076 1:CAS:528:DC%2BD2MXhtlSnu7fM (Pubitemid 40958830)
24. G-H Kim YW Lim YS Choi M-J Kim J-J Kim 2009 Primary and secondary decay fungi on exposed pine tree logs in the forest Holzforsch 63 633 638 10.1515/HF.2009.099 1:CAS:528:DC%2BD1MXhtFSgtrvN
25. H Kwasna E Ward GL Bateman 2006 Phylogenetic relationships among zygomycetes from soil based on ITS1/ITS2 rDNA sequences Mycol Res 110 501 510 10.1016/j.mycres.2006.02.004 1:CAS:528:DC%2BD28XnslSqt7c%3D 16769506 (Pubitemid 44061667)
26. Lamar RT, Main LM, Dietrich DM, Glaser JA. (1999) Screening of fungi for soil remediation potential. In: Kral DM, Viney MK (eds) Bioremediation of contaminated soils. SSSA Special Publication Number 37. American Society of Agronomy Inc., Crop Science Society of America Inc, Soil Science Society of America Inc., Madison, Wisconsin, pp 437-456
27. R Landeweert P Leeflang TW Kuyper E Hoffland A Rosling K Wernars E Smit 2003 Molecular identification of ectomycorrhizal mycelium in soil Appl Environ Microbiol 69 327 333 10.1128/AEM.69.1.327-333.2003 1:CAS:528: DC%2BD3sXkvValsA%3D%3D 12514012 (Pubitemid 36077492)
28. L Launen L Pinto C Wiebe E Kiehlmann M Moore 1995 The oxidation of pyrene and benzo[a]pyrene by non-basidiomycete soil fungi Can J Microbiol 41 477 488 10.1139/m95-064 1:CAS:528:DyaK2MXntFartbo%3D 7627908
29. JC-I Lee M Cole A Linacre 2000 Identification of members of the genera Panaeolus and Psilocybe by a DNA test: a preliminary test for hallucinogenic fungi Forensic Sci Int 112 2-3 123 133 10.1016/S0379-0738(00)00181-X 1:CAS:528:DC%2BD3cXlsFeqt7Y%3D 10940597 (Pubitemid 30625035)
30. LH Lim RM Harrison S Harrad 1999 The contribution of traffic to atmospheric concentrations of polycyclic aromatic hydrocarbons Environ Sci Technol 33 3538 3542 10.1021/es990392d 1:CAS:528:DyaK1MXlslOnsLk%3D (Pubitemid 29496403)
31. YW Lim J-J Kim R Chedgy PI Morris C Breuil 2005 Fungal diversity from western red cedar fences and their resistance to β-thujaplicin Anton van Leeuwenhoek 87 109 117 10.1007/s10482-004-1729-x 1:CAS:528:DC%2BD2MXjslOlsro%3D
32. F Lutzoni F Kauff JC Cox D McLaughlin G Celio B Dentinger M Padamsee D Hibbett TY James E Baloch M Grube V Reeb V Hofstetter C Schoch AE Arnold J Miadlikowska J Spatafora D Johnson S Hambleton M Crockett R Shoemaker G-H Sung R Lücking T Lumbsch K O'Donnell M Binder P Diederich D Ertz C Gueidan K Hansen RC Harris K Hosaka YW Lim B Matheny H Nishida D Pfister J Rogers A Rossman I Schmitt H Sipman J Stone J Sugiyama R Yahr R Vilgalys 2004 Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits Am J Bot 91 1446 1480 10.3732/ajb.91.10.1446 (Pubitemid 43193713)
33. PB Matheny Z Wang M Binder JM Curtis YW Lim RH Nilsson KW Hughes V Hofstetter JF Ammirati C Schoch E Langer G Langer DJ McLaughlin AW Wilson T Froslev ZW Ge RW Kerrigan R Kerrigan J Slot ZL Yang TJ Baroni M Fischer K Hosaka K Matsuura M Seidl J Vauras DS Hibbett 2007 Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi) Mol Phylogenet Evol 43 430 451 10.1016/j.ympev.2006.08.024 1:CAS:528:DC%2BD2sXlt1altr4%3D 17081773 (Pubitemid 46705495)
34. W Meyer W Gams 2003 Delimitation of Umbelopsis (Mucorales, Umbelopsidaceae fam. Nov.) based on ITS sequence and RELP data Mycol Res 107 339 350 10.1017/S0953756203007226 1:CAS:528:DC%2BD3sXjs1Kmsr4%3D 12825503 (Pubitemid 36599428)
35. P Morgan ST Lewis RJ Watkinson 1991 Comparison of abilities of white-rot fungi to mineralize selected xenobiotic compounds Appl Microbiol Biotechnol 34 693 696 10.1007/BF00167925 1:CAS:528:DyaK3MXhvVWru7k%3D
36. JG Mueller PJ Chapman PH Pritchard 1989 Creosote contaminated sites: their potential for bioremediation Environ Sci Technol 23 197 1201 10.1021/es00068a003
37. O Potin C Rafin E Veignie 2004 Bioremediation of an aged polycyclic aromatic hydrocarbons (PAHs)-contaminated soil by filamentous fungi isolated from the soil Int Biodeterior Biodegrad 54 45 52 10.1016/j.ibiod.2004.01.003 1:CAS:528:DC%2BD2cXjtF2ktb4%3D (Pubitemid 38498085)
38. ML Rabinovich AV Bolobova LG Vasil'chenko 2004 Fungal decomposition of natural aromatic structures and xenobiotics: a review Appl Biochem Microbiol 40 1 17 10.1023/B:ABIM.0000010343.73266.08 1:CAS:528:DC%2BD3sXhtVWhtbjO (Pubitemid 38986915)
39. C Ravelet S Krivobook L Sage R Steiman 2000 Biodegradation of pyrene by sediment fungi Chemosphere 40 557 563 10.1016/S0045-6535(99)00320-3 1:CAS:528:DC%2BD3cXntlCnsQ%3D%3D 10665394 (Pubitemid 30038628)
40. GJ Samuels SL Dodd B-S Lu O Petrini H-J Schroers IS Druzhinina 2006 The Trichoderma koningii aggregate species Stud Mycol 56 67 133 10.3114/sim.2006.56. 03 18490990 (Pubitemid 44864119)
41. A Saraswathy R Hallberg 2002 Degradation of pyrene by indigenous fungi from a former gasworks site FEMS Microbiol Lett 210 227 232 10.1111/j.1574-6968. 2002.tb11185.x 1:CAS:528:DC%2BD38XktVaqsrY%3D 12044679 (Pubitemid 34607190)
42. O Schmidt U Moreth 2002 Data bank of rDNA-ITS sequences from building-rot fungi for their identification Wood Sci Technol 36 429 433 10.1007/s00226-002- 0152-6 1:CAS:528:DC%2BD38XotVyqtLk%3D (Pubitemid 35459059)
43. R Vilgalys M Hester 1990 Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species J Bacteriol 172 4238 4246 1:CAS:528:DyaK3cXkvFaltbg%3D 2376561 (Pubitemid 20236711)
44. BRM Vyas J Volc V Sasek 1994 Ligninolytic enzymes of selected white rot fungi cultivated on wheat straw Folia Microbiol 39 235 240 10.1007/BF02814655 1:CAS:528:DyaK2cXmsFSrsbs%3D (Pubitemid 24832597)
45. White TJ, Bruns TD, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, New York, pp 315-322
46. RA Zabel RA Moore 1958 Relative effectiveness of several oil-soluble wood preservatives For Prod J 8 258 263
47. RA Zabel FF Lombard CJK Wang F Terracina 1985 Fungi associated with decay in treated southern pine utility poles in the eastern United States Wood Fiber Sci 17 75 91 1:CAS:528:DyaL2MXht1OisLo%3D