RAPD, RFLP, T-RFLP, AFLP, RISA

Methods in Gut Microbial Ecology for Ruminants

Volumn , Issue , 2005, Pages 151-159

  Denman, Stuart E ^a   Mitsumori, Makoto ^b   McSweeney, Christopher S ^a  

^a CSIRO   (Australia)

^b NATIONAL INSTITUTE OF LIVESTOCK AND GRASSLAND SCIENCE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77951660299     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/1-4020-3791-0_12     Document Type: Chapter

References (13)

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2. Avaniss-Aghajani, E., K. Jones, D. Chapman, and C. Brunk. 1994. Amolecular technique for identification of bacteria using small subunit ribosomal RNA sequences. Biotechniques 17:144-146, 148-149.
3. Busse, H. J., E. B. Denner, and W. Lubitz. 1996. Classification and identification of bacteria: current approaches to an old problem. Overview of methods used in bacterial systematics. J. Biotechnol. 47:3-38.
4. Domig, K. J., H. K. Mayer, and W. Kneifel. 2003. Methods used for the isolation, enumeration, characterisation and identification of Enterococcus spp. 2. Pheno- and genotypic criteria. Int. J. Food Microbiol. 88:165-188.
5. Fisher, M. M., and E. W. Triplett. 1999. Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl. Environ. Microbiol. 65:4630-4636.
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7. Lane, D. J. 1991. 16S/23S rRNA sequencing, pp. 115-176. In E. Stackebrandt and M. Goodfellow (eds.), Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons, Inc., New York, NY.
8. Liu, W. T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
9. Normand, P., C. Ponsonnet, X. Nesme, M. Neyra, and P. Simonet. 1996. ITS analysis of prokaryotes, pp. 1-12. In D. L. Akkermans, J. D. van Elsas and E. I. de Bruijn (eds.), Molecular Microbial Ecology Manual, Vol. 3. 4. 5. Kluwer Academic Publishers, Amsterdam, The Netherlands.
10. Vettori, C. D., D. Paffetti, G. Pietramellara, G. Stotzky, and E. Gallori. 1996. Amplification of bacterial DNA bound on clay minerals by the random amplified polymorphic DNA (RAPD) technique. FEMS Microbiol. Ecol. 20:251-260.
11. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. Van De Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau. 1995. AFLP: a new concept for DNA fingerprinting. Nucleic Acids Res. 23:4407-4414.
12. Wikström, P., L. Häglund, and M. Forsman. 2000. Structure of a natural microbial community in a nitroaromatic contaminated groundwater is altered during biodegradation of extrinsic, but not intrinsic substrates. Microbiol. Ecol. 39:203-210.
13. Williams, J. G. K., A. R. Kubelik, K. J. Livak, J. A. Rafalski, and S. V. Tingey. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18:6531-6535.