Redox proteomics

Expert Review of Proteomics

Volumn 7, Issue 1, 2010, Pages 1-4

  Sheehan, David ^a   McDonagh, Brian ^b   Brcena, José Antonio ^b  

^a UNIVERSITY COLLEGE CORK   (Ireland)

^b UNIVERSITY OF CÓRDOBA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CATALASE; DNA; IODOACETAMIDE; MEMBRANE LIPID; MESYLIC ACID METHYL ESTER; N ETHYLMALEIMIDE; REACTIVE NITROGEN SPECIES; REACTIVE OXYGEN METABOLITE; THIOREDOXIN;

AEROBIC METABOLISM; AFFINITY LABELING; ALKYLATION; AUXOTROPHY; CARBONYLATION; DOWN REGULATION; EDITORIAL; ELECTROSPRAY MASS SPECTROMETRY; ENERGY METABOLISM; ENZYME ACTIVITY; GENE OVEREXPRESSION; ISOTOPE LABELING; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR DYNAMICS; NITRATION; NONHUMAN; OXIDATION REDUCTION REACTION; OXIDATIVE STRESS; PROTEIN EXPRESSION; PROTEOMICS; SENSITIVITY AND SPECIFICITY; SIGNAL TRANSDUCTION; TRANSGENIC MOUSE; TWO DIMENSIONAL ELECTROPHORESIS; UPREGULATION;

ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HUMANS; MASS SPECTROMETRY; OXIDATION-REDUCTION; OXIDATIVE STRESS; PROTEINS; PROTEOMICS; SULFHYDRYL COMPOUNDS;

EID: 77951630001     PISSN: 14789450     EISSN: 17448387     Source Type: Journal    
DOI: 10.1586/epr.09.98     Document Type: Editorial

References (31)

1. Owens T, Cess CD, Ramanathan A. Enhanced carbon dioxide greenhouse to compensate for reduced solar luminosity on early Earth. Nature 277, 640-641 (1979).
2. Davies MJ. The oxidative environment and protein damage. Biochim. Biophys. Acta 1703, 93-109 (2005).
3. Winterbourn CC. Reconciling the chemistry and biology of reactive oxygen species. Nat. Chem. Biol. 4, 278-286 (2008).
4. Halliwell B, Gutteridge J. Free Radicals in Biology and Medicine (4th Edition). Oxford University Press, Oxford, UK (2007).
5. Oktyabrsky ON, Smirnova GV. Redox regulation of cellular function. Biochemistry 72(2), 32-145 (2007).
6. Chiarugi P, Buricchi F. Protein tyrosine phosphorylation and reversible oxidation: two cross-talking posttranslational modifcations. Antioxid. Redox Signal. 9, 1-24 (2007).
7. Görg A, Weiss W, Dunn MJ. Current two-dimensional electrophoresis technology for proteomics. Proteomics 4, 3665-3685 (2004).
8. Rabilloud T, Heller M, Gasnier F et al. Proteomics analysis of cellular response to oxidative stress-evidence for in vivo overoxidation of peroxiredoxins at their active site. J. Biol. Chem. 277, 19396-19401 (2002).
9. Kanamoto T, Hellman U, Heldin CH et al. Functional proteomics of transforming growth factor-b 2-stimulated My1Lu epithelial cells: Rad51 as a target of TGFb 1-dependent regulation of DNA repair. EMBO J. 21, 1219-1230 (2002).
10. Sheehan D. Detection of redox-based modifcation in two dimensional electrophoresis proteomic separations. Biochem. Biophys. Res. Commun. 349, 455-462 (2006).
11. Noda Y, Berlett BS, Stadtman ER et al. Identifcation of enzymes and regulatory proteins in Escherichia coli that are oxidized under nitrogen, carbon or phosphate starvation. Proc. Natl Acad. Sci. USA 104, 18456-18460 (2007).
12. Tyther R, Ahmeda A, Johns E et al. Proteomic identifcation of tyrosine nitration targets in kidney of spontaneously hypertensive rats. Proteomics 7, 4555-4564 (2007).
13. Newman SF, Sultana R, Perluigi M et al. An increase in S-glutathionylated proteins in the Alzheimer's disease inferior parietal lobule, a proteomics approach. J. Neurosci. Res. 85, 1506-1514 (2009).
14. Lind C, Gerdes R, Hamnell Y et al. Identifcation of S-glutathionylated cellular proteins during oxidative stress and constitutive metabolism by affnity purifcation and proteomic analysis. Arch. Biochem. Biophys. 406, 229-240 (2002).
15. Baty JW, Hampton MB, Winterbourn CC. Detection of oxidant sensitive thiol proteins by fuorescence labelling and two dimensional electrophoresis. Proteomics 2, 1261-1266 (2002).
16. Leichert LI, Jakob U. Protein thiol modifcations visualized in vivo. PLOS Biol. 2, 1723-1737 (2004).
17. Levine RL, Moskovitz J, Stadtman ER. Oxidation of methionines in proteins: roles in antioxidant defense and cellular regulation. IUBMB Life 50, 301-307 (2000).
18. Hansen RE, Roth JR, Winther JR. Quantifying the global cellular thiol-disulfde status. Proc. Natl Acad. Sci. USA 106, 422-427 (2009).
19. Saurin AT, Neubert H, Brennan JP et al. Widespread sulfenic acid formation in tissues in response to hydrogen peroxide. Proc. Natl Acad. Sci. USA 101, 17982-17987 (2004).
20. Jaffrey SR, Erdjument-Bromage H, Ferris CD et al. Protein S-nitrosylation: a physiological signal for neuronal nitric oxide. Nat. Cell. Biol. 3, 193-197 (2001).
21. Malmstrom J, Lee H, Aebersold R. Advances in proteomic workfows for systems biology. Curr. Opin. Biotechnol. 18, 378-384 (2007).
22. McDonagh B, Ogueta S, Lasarte G et al. Shotgun redox proteomics identifes specifcally modifed cysteines in key metabolic enzymes under oxidative stress in Saccharomyces cerevisiae. J. Proteomics 72, 677-689 (2009).
23. Hashemy SI, Johansson C, Berndt C et al. Oxidation and S-nitrosylation of cysteines in human cytosolic and mitochondrial glutaredoxins: effects on structure and activity. J. Biol. Chem. 282, 14428-14436 (2007).
24. Gygi SP, Rist B, Gerber SA et al. Quantitative analysis of complex protein mixtures using isotope-coded affnity tags. Nat. Biotechnol. 17(10), 994-999 (1999).
25. Ong SE, Blagoev B, Kratchmarova I et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386 (2002).
26. Ross PL, Huang YN, Marchese JN et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics. 3(12), 1154-1169 (2004).
27. Nelson KJ, Day AE, Zeng BB et al. Isotope-coded, iodoacetamide-based reagent to determine individual cysteine pK(a) values by matrix-assisted laser desorption/ionization time-of-fight mass spectrometry. Anal. Biochem. 375, 187-195 (2008).
28. Sethuraman M, McComb ME, Huang H et al. Isotope-coded affnity tag (ICAT) approach to redox proteomics: identifcation and quantitation of oxidant-sensitive cysteine thiols in complex protein mixtures. J. Proteome Res. 3, 1228-1233 (2004).
29. Liechert LI, Gehrke F, Gudiseva HV et al. Quantifying changes in the thiol redox proteome upon oxidative stress in vivo. Proc. Natl Acad. Sci. USA 105, 8197-8202 (2008).
30. Fu C, Wu C, Liu T et al. Elucidation of thioredoxin target protein networks in mouse. Mol. Cell. Proteomics. 8, 1674-1687 (2009).
31. Mann M. Functional and quantitative proteomics using SILAC. Nat. Rev. Mol. Cell Biol. 7, 952-958 (2006).