메뉴 건너뛰기




Volumn 4, Issue 11, 2009, Pages

The Mycobacterial MsDps2 Protein Is a Nucleoid-Forming DNA Binding Protein Regulated by Sigma Factors σA and σB

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; DNA; DNA BINDING PROTEIN; DNA DIRECTED RNA POLYMERASE; DPS PROTEIN, BACTERIA; SIGMA FACTOR;

EID: 77951234325     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0008017     Document Type: Article
Times cited : (13)

References (24)
  • 1
    • 0024447153 scopus 로고
    • Genetic basis of starvation survival in non differentiating bacteria
    • Matin A, Auger EA, Blum PH, Schultz JE, (1989) Genetic basis of starvation survival in non differentiating bacteria. Annu Rev Microbiol 43: 293-316.
    • (1989) Annu Rev Microbiol , vol.43 , pp. 293-316
    • Matin, A.1    Auger, E.A.2    Blum, P.H.3    Schultz, J.E.4
  • 2
    • 33750512774 scopus 로고    scopus 로고
    • Nucleoid organization and the maintenance of DNA integrity in E. coli, B. subtilis and D. radiodurans
    • Frenkiel-Krispin D, Minsky A, (2006) Nucleoid organization and the maintenance of DNA integrity in E. coli, B. subtilis and D. radiodurans. J Struct Biol 156: 311-319.
    • (2006) J Struct Biol , vol.156 , pp. 311-319
    • Frenkiel-Krispin, D.1    Minsky, A.2
  • 3
    • 0027083350 scopus 로고
    • A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli
    • Almirón M, Link AJ, Furlong D, Kolter R, (1992) A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli. Genes Dev 6: 2646-2654.
    • (1992) Genes Dev , vol.6 , pp. 2646-2654
    • Almirón, M.1    Link, A.J.2    Furlong, D.3    Kolter, R.4
  • 4
    • 3042660143 scopus 로고    scopus 로고
    • Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy
    • Kim J, Yoshimura SH, Hizume K, Ohniwa RL, Ishihama A, et al.(2004) Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy. Nucleic Acids Res 32: 1982-1992.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1982-1992
    • Kim, J.1    Yoshimura, S.H.2    Hizume, K.3    Ohniwa, R.L.4    Ishihama, A.5
  • 5
    • 0036019356 scopus 로고    scopus 로고
    • Proteomics analysis of carbon-starved Mycobacterium smegmatis: induction of Dps-like protein
    • Gupta S, Pandit SB, Srinivasan N, Chatterji D, (2002) Proteomics analysis of carbon-starved Mycobacterium smegmatis: induction of Dps-like protein. Protein Eng 15: 503-512.
    • (2002) Protein Eng , vol.15 , pp. 503-512
    • Gupta, S.1    Pandit, S.B.2    Srinivasan, N.3    Chatterji, D.4
  • 6
    • 0038813712 scopus 로고    scopus 로고
    • Bimodal protection of DNA by Mycobacterium smegmatis DNA-binding protein from stationary phase cells
    • Gupta S, Chatterji D, (2003) Bimodal protection of DNA by Mycobacterium smegmatis DNA-binding protein from stationary phase cells. J Biol Chem 278: 5235-5241.
    • (2003) J Biol Chem , vol.278 , pp. 5235-5241
    • Gupta, S.1    Chatterji, D.2
  • 7
    • 27144476584 scopus 로고    scopus 로고
    • Reassessment of protein stability, DNA binding, and protection of Mycobacterium smegmatis Dps
    • Ceci P, Ilari A, Falvo E, Giangiacomo L, Chiancone E, (2005) Reassessment of protein stability, DNA binding, and protection of Mycobacterium smegmatis Dps. J Biol Chem 280: 34776-34785.
    • (2005) J Biol Chem , vol.280 , pp. 34776-34785
    • Ceci, P.1    Ilari, A.2    Falvo, E.3    Giangiacomo, L.4    Chiancone, E.5
  • 8
    • 37449010013 scopus 로고    scopus 로고
    • Identification and characterization of the dps promoter of Mycobacterium smegmatis: promoter recognition by stress-specific extracytoplasmic function sigma factors σH and σF
    • Chowdhury R, Gupta S, Chatterji D, (2007) Identification and characterization of the dps promoter of Mycobacterium smegmatis: promoter recognition by stress-specific extracytoplasmic function sigma factors σH and σF J Bacteriol 189: 8973-8981.
    • (2007) J Bacteriol , vol.189 , pp. 8973-8981
    • Chowdhury, R.1    Gupta, S.2    Chatterji, D.3
  • 9
    • 37349040333 scopus 로고    scopus 로고
    • Structural studies on the second Mycobacterium smegmatis Dps: invariant and variable features of structure, assembly and function
    • Roy S, Saraswathi R, Chatterji D, Vijayan M, (2008) Structural studies on the second Mycobacterium smegmatis Dps: invariant and variable features of structure, assembly and function. J Mol Biol 375: 948-959.
    • (2008) J Mol Biol , vol.375 , pp. 948-959
    • Roy, S.1    Saraswathi, R.2    Chatterji, D.3    Vijayan, M.4
  • 10
    • 34247590894 scopus 로고    scopus 로고
    • Estimation of Förster's distance between two ends of Dps protein from mycobacteria: Distance heterogeneity as a function of oligomerization and DNA binding
    • Chowdhury RP, Chatterji D, (2007) Estimation of Förster's distance between two ends of Dps protein from mycobacteria: Distance heterogeneity as a function of oligomerization and DNA binding. Biophys Chem 128: 19-29.
    • (2007) Biophys Chem , vol.128 , pp. 19-29
    • Chowdhury, R.P.1    Chatterji, D.2
  • 11
    • 34249941286 scopus 로고    scopus 로고
    • Role of N and C-terminal tails in DNA binding and assembly in Dps: structural studies of Mycobacterium smegmatis Dps deletion mutants
    • Roy S, Saraswathi R, Gupta S, Sekar K, Chatterji D, et al.(2007) Role of N and C-terminal tails in DNA binding and assembly in Dps: structural studies of Mycobacterium smegmatis Dps deletion mutants. J Mol Biol 370: 752-767.
    • (2007) J Mol Biol , vol.370 , pp. 752-767
    • Roy, S.1    Saraswathi, R.2    Gupta, S.3    Sekar, K.4    Chatterji, D.5
  • 12
    • 3042582299 scopus 로고    scopus 로고
    • X-ray analysis of Mycobacterium smegmatis Dps and a comparative study involving other Dps and Dps-like molecules
    • Roy S, Gupta S, Das S, Sekar K, Chatterji D, et al.(2004) X-ray analysis of Mycobacterium smegmatis Dps and a comparative study involving other Dps and Dps-like molecules. J Mol Biol 339: 1103-1113.
    • (2004) J Mol Biol , vol.339 , pp. 1103-1113
    • Roy, S.1    Gupta, S.2    Das, S.3    Sekar, K.4    Chatterji, D.5
  • 13
    • 0037371197 scopus 로고    scopus 로고
    • Purification, gene cloning, gene expression, and mutants of Dps from the obligate anaerobe Porphyromonas gingivalis
    • Ueshima J, Shoji M, Ratnayake DB, Abe K, Yoshida S, et al.(2003) Purification, gene cloning, gene expression, and mutants of Dps from the obligate anaerobe Porphyromonas gingivalis. Infect Immun 71: 1170-1178.
    • (2003) Infect Immun , vol.71 , pp. 1170-1178
    • Ueshima, J.1    Shoji, M.2    Ratnayake, D.B.3    Abe, K.4    Yoshida, S.5
  • 14
    • 0036091613 scopus 로고    scopus 로고
    • An iron-binding protein, Dpr, from Streptococcus mutans prevents iron-dependent hydroxyl radical formation in vitro
    • Yamamoto Y, Poole LB, Hantgan RR, Kamio Y, (2002) An iron-binding protein, Dpr, from Streptococcus mutans prevents iron-dependent hydroxyl radical formation in vitro. J Bacteriol 184: 2931-2939.
    • (2002) J Bacteriol , vol.184 , pp. 2931-2939
    • Yamamoto, Y.1    Poole, L.B.2    Hantgan, R.R.3    Kamio, Y.4
  • 16
    • 34249846924 scopus 로고    scopus 로고
    • The neutrophil-activating Dps protein of Helicobacter pylori, HP-NAP, adopts a mechanism different from Escherichia coli Dps to bind and condense DNA
    • Ceci P, Mangiarotti L, Rivetti C, Chiancone E, (2007) The neutrophil-activating Dps protein of Helicobacter pylori, HP-NAP, adopts a mechanism different from Escherichia coli Dps to bind and condense DNA. Nucleic Acids Res 35: 2247-22563.
    • (2007) Nucleic Acids Res , vol.35 , pp. 2247-22563
    • Ceci, P.1    Mangiarotti, L.2    Rivetti, C.3    Chiancone, E.4
  • 17
    • 10244243805 scopus 로고    scopus 로고
    • DNA condensation and self-aggregation of Escherichia coli Dps are coupled phenomena related to the properties of the N-terminus
    • Ceci P, Cellai S, Falvo E, Rivetti C, Rossi GL, et al.(2004) DNA condensation and self-aggregation of Escherichia coli Dps are coupled phenomena related to the properties of the N-terminus. Nucleic Acids Res 32: 5935-5944.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5935-5944
    • Ceci, P.1    Cellai, S.2    Falvo, E.3    Rivetti, C.4    Rossi, G.L.5
  • 18
    • 0026573628 scopus 로고
    • Lethal overproduction of the Escherichia coli nucleoid protein H-NS: ultramicroscopic and molecular autopsy
    • Spurio R, Dürrenberger M, Falconi M, La Teana A, Pon C, et al.(1992) Lethal overproduction of the Escherichia coli nucleoid protein H-NS: ultramicroscopic and molecular autopsy. Mol Gen Genet 231: 201-211.
    • (1992) Mol Gen Genet , vol.231 , pp. 201-211
    • Spurio, R.1    Dürrenberger, M.2    Falconi, M.3    La Teana, A.4    Pon, C.5
  • 19
    • 0033021173 scopus 로고    scopus 로고
    • Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival
    • Ishihama A, (1999) Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival. Genes Cells 4: 135-143.
    • (1999) Genes Cells , vol.4 , pp. 135-143
    • Ishihama, A.1
  • 20
    • 0025081151 scopus 로고
    • Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis
    • Snapper SB, Melton RE, Mustafa S, Kieser T, Jacobs WR, (1990) Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis. Mol Microbiol 4: 1911-1919.
    • (1990) Mol Microbiol , vol.4 , pp. 1911-1919
    • Snapper, S.B.1    Melton, R.E.2    Mustafa, S.3    Kieser, T.4    Jacobs, W.R.5
  • 21
    • 0027006036 scopus 로고
    • A specific stain for the detection of non-heme iron proteins in polyacrylamide gels
    • Leong LM, Tan BH, Ho KK, (1992) A specific stain for the detection of non-heme iron proteins in polyacrylamide gels. Anal Biochem 207: 317-320.
    • (1992) Anal Biochem , vol.207 , pp. 317-320
    • Leong, L.M.1    Tan, B.H.2    Ho, K.K.3
  • 22
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet F, (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res 16: 10881-10890.
    • (1988) Nucleic Acids Res , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 23
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J, Higgins D, Gibson T, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.1    Higgins, D.2    Gibson, T.3
  • 24
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
    • Kumar S, Nei M, Dudley J, Tamura K, (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinformatics 9: 299-306.
    • (2008) Brief Bioinformatics , vol.9 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.