-
2
-
-
34249803207
-
Discovery and characterization of 91 novel transcripts expressed in cattle placenta
-
10.1186/1471-2164-8-113, 1884150, 17488528
-
Kumar CG, Larson JH, Band MR, Lewin HA. Discovery and characterization of 91 novel transcripts expressed in cattle placenta. BMC Genomics 2007, 8:113-128. 10.1186/1471-2164-8-113, 1884150, 17488528.
-
(2007)
BMC Genomics
, vol.8
, pp. 113-128
-
-
Kumar, C.G.1
Larson, J.H.2
Band, M.R.3
Lewin, H.A.4
-
3
-
-
33646789780
-
Discovery of eight novel divergent homologs expressed in cattle placenta
-
10.1152/physiolgenomics.00307.2005, 16554549
-
Larson JH, Kumar CG, Everts RE, Green C, Wind A, Band MR, Lewin HA. Discovery of eight novel divergent homologs expressed in cattle placenta. Physiol Genomics 2006, 25:405-413. 10.1152/physiolgenomics.00307.2005, 16554549.
-
(2006)
Physiol Genomics
, vol.25
, pp. 405-413
-
-
Larson, J.H.1
Kumar, C.G.2
Everts, R.E.3
Green, C.4
Wind, A.5
Band, M.R.6
Lewin, H.A.7
-
4
-
-
0036066765
-
The role of lineage-specific gene family expansion in the evolution of eukaryotes
-
10.1101/gr.174302, 186617, 12097341
-
Lespinet O, Wolf YI, Koonin EV, Aravind L. The role of lineage-specific gene family expansion in the evolution of eukaryotes. Genome Res 2002, 12:1048-59. 10.1101/gr.174302, 186617, 12097341.
-
(2002)
Genome Res
, vol.12
, pp. 1048-1059
-
-
Lespinet, O.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
5
-
-
34547093157
-
Identification of a novel noncoding RNA gene, NAMA, that is downregulated in papillary thyroid carcinoma with BRAF mutation and associated with growth arrest
-
10.1002/ijc.22701, 17415708
-
Yoon H, He H, Nagy R, Davuluri R, Suster S, Schoenberg D, Pellegata N, Chapelle Ade L. Identification of a novel noncoding RNA gene, NAMA, that is downregulated in papillary thyroid carcinoma with BRAF mutation and associated with growth arrest. Int J Cancer 2007, 121:767-75. 10.1002/ijc.22701, 17415708.
-
(2007)
Int J Cancer
, vol.121
, pp. 767-775
-
-
Yoon, H.1
He, H.2
Nagy, R.3
Davuluri, R.4
Suster, S.5
Schoenberg, D.6
Pellegata, N.7
Chapelle Ade, L.8
-
6
-
-
2942560254
-
Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
-
10.1038/nature02538, 15175754
-
Martens JA, Laprade L, Winston F. Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Nature 2004, 429:571-4. 10.1038/nature02538, 15175754.
-
(2004)
Nature
, vol.429
, pp. 571-574
-
-
Martens, J.A.1
Laprade, L.2
Winston, F.3
-
7
-
-
2642554608
-
C2360, a nuclear protein expressed in human proliferative cytotrophoblasts, is a representative member of a novel protein family with a conserved coiled coil-helix-coiled coil-helix domain
-
10.1016/j.ygeno.2003.12.006, 15177562
-
Westerman BA, Poutsma A, Steegers EA, Oudejans CB. C2360, a nuclear protein expressed in human proliferative cytotrophoblasts, is a representative member of a novel protein family with a conserved coiled coil-helix-coiled coil-helix domain. Genomics 2004, 83:1094-104. 10.1016/j.ygeno.2003.12.006, 15177562.
-
(2004)
Genomics
, vol.83
, pp. 1094-1104
-
-
Westerman, B.A.1
Poutsma, A.2
Steegers, E.A.3
Oudejans, C.B.4
-
8
-
-
12244313876
-
Isolation and biochemical characterization of LEAP-2, a novel blood peptide expressed in the liver
-
10.1110/ps.0213603, 2312392, 12493837
-
Krause A, Sillard R, Kleemeier B, Klüver E, Maronde E, Conejo-García JR, Forssmann WG, Schulz-Knappe P, Nehls MC, Wattler F, Wattler S, Adermann K. Isolation and biochemical characterization of LEAP-2, a novel blood peptide expressed in the liver. Protein Sci 2003, 12:143-52. 10.1110/ps.0213603, 2312392, 12493837.
-
(2003)
Protein Sci
, vol.12
, pp. 143-152
-
-
Krause, A.1
Sillard, R.2
Kleemeier, B.3
Klüver, E.4
Maronde, E.5
Conejo-García, J.R.6
Forssmann, W.G.7
Schulz-Knappe, P.8
Nehls, M.C.9
Wattler, F.10
Wattler, S.11
Adermann, K.12
-
9
-
-
0032103490
-
Molecular cloning and expression analysis of five novel genes in chromosome 1p36
-
10.1006/geno.1997.5186, 9653645
-
Onyango P, Lubyova B, Gardellin P, Kurzbauer R, Weith A. Molecular cloning and expression analysis of five novel genes in chromosome 1p36. Genomics 1998, 50:187-98. 10.1006/geno.1997.5186, 9653645.
-
(1998)
Genomics
, vol.50
, pp. 187-198
-
-
Onyango, P.1
Lubyova, B.2
Gardellin, P.3
Kurzbauer, R.4
Weith, A.5
-
10
-
-
0029783069
-
Isolation of two novel cDNAs whose products associate with the amino terminus of the E2F1 transcription factor
-
10.1021/bi9611927, 8823166
-
Jordan KL, Evans DL, Steelman S, Hall DJ. Isolation of two novel cDNAs whose products associate with the amino terminus of the E2F1 transcription factor. Biochemistry 1996, 35:12320-8. 10.1021/bi9611927, 8823166.
-
(1996)
Biochemistry
, vol.35
, pp. 12320-12328
-
-
Jordan, K.L.1
Evans, D.L.2
Steelman, S.3
Hall, D.J.4
-
11
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
25624, 9843569
-
Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D, Futcher B. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 1998, 9:3273-97. 25624, 9843569.
-
(1998)
Mol Biol Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
12
-
-
0033028596
-
Systematic determination of genetic network architecture
-
10.1038/10343, 10391217
-
Tavazoie S, Hughes JD, Campbell MJ, Cho RJ, Church GM. Systematic determination of genetic network architecture. Nat Genet 1999, 22:281-5. 10.1038/10343, 10391217.
-
(1999)
Nat Genet
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
13
-
-
0347062491
-
Proteomics and regulomics: the yin and yang of functional genomics
-
10.1002/mas.10067, 14625890
-
Werner T. Proteomics and regulomics: the yin and yang of functional genomics. Mass Spectrom Rev 2004, 23:25-33. 10.1002/mas.10067, 14625890.
-
(2004)
Mass Spectrom Rev
, vol.23
, pp. 25-33
-
-
Werner, T.1
-
14
-
-
0023390968
-
Independent regulation of transcription of the two strands of the c-myc gene
-
367903, 3499566
-
Kindy MS, McCormack JE, Buckler AJ, Levine RA, Sonenshein GE. Independent regulation of transcription of the two strands of the c-myc gene. Mol Cell Biol 1987, 7:2857-62. 367903, 3499566.
-
(1987)
Mol Cell Biol
, vol.7
, pp. 2857-2862
-
-
Kindy, M.S.1
McCormack, J.E.2
Buckler, A.J.3
Levine, R.A.4
Sonenshein, G.E.5
-
15
-
-
33644855121
-
Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae
-
10.1093/nar/gkj487, 1361616, 16464824
-
Yu X, Lin J, Masuda T, Esumi N, Zack DJ, Qian J. Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae. Nucleic Acids Res 2006, 34:917-27. 10.1093/nar/gkj487, 1361616, 16464824.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 917-927
-
-
Yu, X.1
Lin, J.2
Masuda, T.3
Esumi, N.4
Zack, D.J.5
Qian, J.6
-
16
-
-
40449086382
-
Prediction of synergistic transcription factors by function conservation
-
10.1186/gb-2007-8-12-r257, 2246259, 18053230
-
Hu Z, Hu B, Collins JF. Prediction of synergistic transcription factors by function conservation. Genome Biol 2007, 8:R257-76. 10.1186/gb-2007-8-12-r257, 2246259, 18053230.
-
(2007)
Genome Biol
, vol.8
-
-
Hu, Z.1
Hu, B.2
Collins, J.F.3
-
17
-
-
20144370200
-
OPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes
-
10.1093/nar/gki624, 1142402, 15933209
-
Ho Sui SJ, Mortimer JR, Arenillas DJ, Brumm J, Walsh CJ, Kennedy BP, Wasserman WW. oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes. Nucleic Acids Res 2005, 33:3154-64. 10.1093/nar/gki624, 1142402, 15933209.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 3154-3164
-
-
Ho Sui, S.J.1
Mortimer, J.R.2
Arenillas, D.J.3
Brumm, J.4
Walsh, C.J.5
Kennedy, B.P.6
Wasserman, W.W.7
-
18
-
-
0036796540
-
Predicting transcription factor synergism
-
10.1093/nar/gkf535, 140535, 12364607
-
Hannenhalli S, Levy S. Predicting transcription factor synergism. Nucleic Acids Res 2002, 30:4278-84. 10.1093/nar/gkf535, 140535, 12364607.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4278-4284
-
-
Hannenhalli, S.1
Levy, S.2
-
19
-
-
33750217984
-
Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues
-
10.1093/nar/gkl595, 1635265, 16982645
-
Yu X, Lin J, Zack DJ, Qian J. Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues. Nucleic Acids Res 2006, 34:4925-36. 10.1093/nar/gkl595, 1635265, 16982645.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4925-4936
-
-
Yu, X.1
Lin, J.2
Zack, D.J.3
Qian, J.4
-
20
-
-
34248187723
-
Transcriptional regulatory network analysis of developing human erythroid progenitors reveals patterns of coregulation and potential transcriptional regulators
-
10.1152/physiolgenomics.00055.2006, 16940433
-
Keller MA, Addya S, Vadigepalli R, Banini B, Delgrosso K, Huang H, Surrey S. Transcriptional regulatory network analysis of developing human erythroid progenitors reveals patterns of coregulation and potential transcriptional regulators. Physiol Genomics 2006, 28:114-28. 10.1152/physiolgenomics.00055.2006, 16940433.
-
(2006)
Physiol Genomics
, vol.28
, pp. 114-128
-
-
Keller, M.A.1
Addya, S.2
Vadigepalli, R.3
Banini, B.4
Delgrosso, K.5
Huang, H.6
Surrey, S.7
-
21
-
-
16244406563
-
A 7872 cDNA microarray and its use in bovine functional genomics
-
10.1016/j.vetimm.2005.02.003, 15808303
-
Everts RE, Band MR, Liu ZL, Kumar CG, Liu L, Loor JJ, Oliveira R, Lewin HA. A 7872 cDNA microarray and its use in bovine functional genomics. Vet Immunol Immunopathol 2005, 105:235-45. 10.1016/j.vetimm.2005.02.003, 15808303.
-
(2005)
Vet Immunol Immunopathol
, vol.105
, pp. 235-245
-
-
Everts, R.E.1
Band, M.R.2
Liu, Z.L.3
Kumar, C.G.4
Liu, L.5
Loor, J.J.6
Oliveira, R.7
Lewin, H.A.8
-
22
-
-
33749442896
-
Plane of nutrition prepartum alters hepatic gene expression and function in dairy cows as assessed by longitudinal transcript and metabolic profiling
-
10.1152/physiolgenomics.00036.2006, 16757553
-
Loor JJ, Dann HM, Guretzky NA, Everts RE, Oliveira R, Green CA, Litherland NB, Rodriguez-Zas SL, Lewin HA, Drackley JK. Plane of nutrition prepartum alters hepatic gene expression and function in dairy cows as assessed by longitudinal transcript and metabolic profiling. Physiol Genomics 2006, 27:29-41. 10.1152/physiolgenomics.00036.2006, 16757553.
-
(2006)
Physiol Genomics
, vol.27
, pp. 29-41
-
-
Loor, J.J.1
Dann, H.M.2
Guretzky, N.A.3
Everts, R.E.4
Oliveira, R.5
Green, C.A.6
Litherland, N.B.7
Rodriguez-Zas, S.L.8
Lewin, H.A.9
Drackley, J.K.10
-
23
-
-
77951175898
-
BCM_HGSC, Baylor College of Medicine Human Genome Sequencing Centre
-
BCM_HGSC, Baylor College of Medicine Human Genome Sequencing Centre. , http://www.hgsc.bcm.tmc.edu/projects/bovine
-
-
-
-
24
-
-
33747846273
-
CRSD: a comprehensive web server for composite regulatory signature discovery
-
10.1093/nar/gkl279, 1538777, 16845073
-
Liu CC, Lin CC, Chen WS, Chen HY, Chang PC, Chen JJ, Yang PC. CRSD: a comprehensive web server for composite regulatory signature discovery. Nucleic Acids Res 2006, 34:W571-7. 10.1093/nar/gkl279, 1538777, 16845073.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Liu, C.C.1
Lin, C.C.2
Chen, W.S.3
Chen, H.Y.4
Chang, P.C.5
Chen, J.J.6
Yang, P.C.7
-
25
-
-
77951197945
-
CRSD
-
CRSD. , http://cgap.nci.nih.gov/Pathways/BioCarta/h_CCR3Pathway
-
-
-
-
26
-
-
0033655171
-
ANN-Spec: a method for discovering transcription factor binding sites with improved specificity
-
Workman CT, Stormo GD. ANN-Spec: a method for discovering transcription factor binding sites with improved specificity. Pac Symp Biocomput 2000, 467-78.
-
(2000)
Pac Symp Biocomput
, pp. 467-478
-
-
Workman, C.T.1
Stormo, G.D.2
-
27
-
-
84891477136
-
IPA, Ingenuity Pathway Analysis
-
IPA, Ingenuity Pathway Analysis. , http://www.ingenuity.com
-
-
-
-
28
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
29
-
-
33749516434
-
SSLP-1, a secreted Ly-6 protein purified from mouse seminal vesicle fluid
-
10.1530/rep.1.01183, 16940290
-
Li SH, Lee RK, Lin MH, Hwu YM, Lu CH, Chen YJ, Chen HC, Chang WH, Chang WC. SSLP-1, a secreted Ly-6 protein purified from mouse seminal vesicle fluid. Reproduction 2006, 132:493-500. 10.1530/rep.1.01183, 16940290.
-
(2006)
Reproduction
, vol.132
, pp. 493-500
-
-
Li, S.H.1
Lee, R.K.2
Lin, M.H.3
Hwu, Y.M.4
Lu, C.H.5
Chen, Y.J.6
Chen, H.C.7
Chang, W.H.8
Chang, W.C.9
-
30
-
-
77951202531
-
PSORTII
-
PSORTII. , http://psort.ims.u-tokyo.ac.jp/
-
-
-
-
31
-
-
34548442971
-
Weighted gene coexpression network analysis strategies applied to mouse weight
-
10.1007/s00335-007-9043-3, 1998880, 17668265
-
Fuller TF, Ghazalpour A, Aten JE, Drake TA, Lusis AJ, Horvath S. Weighted gene coexpression network analysis strategies applied to mouse weight. Mamm Genome 2007, 18:463-72. 10.1007/s00335-007-9043-3, 1998880, 17668265.
-
(2007)
Mamm Genome
, vol.18
, pp. 463-472
-
-
Fuller, T.F.1
Ghazalpour, A.2
Aten, J.E.3
Drake, T.A.4
Lusis, A.J.5
Horvath, S.6
-
32
-
-
69549144001
-
GeneGo MetaCore
-
GeneGo MetaCore. , http://www.genego.com
-
-
-
-
33
-
-
0042706147
-
Genomic analysis of gene expression relationships in transcriptional regulatory networks
-
10.1016/S0168-9525(03)00175-6, 12902159
-
Yu H, Luscombe NM, Qian J, Gerstein M. Genomic analysis of gene expression relationships in transcriptional regulatory networks. Trends Genet 2003, 19:422-7. 10.1016/S0168-9525(03)00175-6, 12902159.
-
(2003)
Trends Genet
, vol.19
, pp. 422-427
-
-
Yu, H.1
Luscombe, N.M.2
Qian, J.3
Gerstein, M.4
-
34
-
-
41349095246
-
Aberrant gene expression patterns in placentomes are associated with phenotypically normal and abnormal cattle cloned by somatic cell nuclear transfer
-
10.1152/physiolgenomics.00223.2007, 18089771
-
Everts RE, Chavatte-Palmer P, Razzak A, Hue I, Green CA, Oliveira R, Vignon X, Rodriguez-Zas SL, Tian XC, Yang X, Renard JP, Lewin HA. Aberrant gene expression patterns in placentomes are associated with phenotypically normal and abnormal cattle cloned by somatic cell nuclear transfer. Physiol Genomics 2008, 33:65-77. 10.1152/physiolgenomics.00223.2007, 18089771.
-
(2008)
Physiol Genomics
, vol.33
, pp. 65-77
-
-
Everts, R.E.1
Chavatte-Palmer, P.2
Razzak, A.3
Hue, I.4
Green, C.A.5
Oliveira, R.6
Vignon, X.7
Rodriguez-Zas, S.L.8
Tian, X.C.9
Yang, X.10
Renard, J.P.11
Lewin, H.A.12
-
35
-
-
0029437063
-
Glycerophospholipid metabolism and human labour
-
10.1071/RD9950613, 8606974
-
Rice GE. Glycerophospholipid metabolism and human labour. Reprod Fertil Dev 1995, 7:613-22. 10.1071/RD9950613, 8606974.
-
(1995)
Reprod Fertil Dev
, vol.7
, pp. 613-622
-
-
Rice, G.E.1
-
36
-
-
0034691677
-
The consequence of p53 overexpression for liver tumor development and the response of transformed murine hepatocytes to genotoxic agents
-
10.1038/sj.onc.1203671, 10918608
-
Gillet R, Grimber G, Bennoun M, Caron de Fromentel C, Briand P, Joulin V. The consequence of p53 overexpression for liver tumor development and the response of transformed murine hepatocytes to genotoxic agents. Oncogene 2000, 19:3498-507. 10.1038/sj.onc.1203671, 10918608.
-
(2000)
Oncogene
, vol.19
, pp. 3498-3507
-
-
Gillet, R.1
Grimber, G.2
Bennoun, M.3
Caron de Fromentel, C.4
Briand, P.5
Joulin, V.6
-
37
-
-
0141886991
-
Regulation of the growth arrest and DNA damage-inducible gene 45 (GADD45) by peroxisome proliferator-activated receptor γ in vascular smooth muscle cells
-
10.1161/01.RES.0000088344.15288.E6, 12881480
-
Bruemmer D, Yin F, Liu J, Berger JP, Sakai T, Blaschke F, Fleck E, Van Herle AJ, Forman BM, Law RE. Regulation of the growth arrest and DNA damage-inducible gene 45 (GADD45) by peroxisome proliferator-activated receptor γ in vascular smooth muscle cells. Circ Res 2003, 93:e38-47. 10.1161/01.RES.0000088344.15288.E6, 12881480.
-
(2003)
Circ Res
, vol.93
-
-
Bruemmer, D.1
Yin, F.2
Liu, J.3
Berger, J.P.4
Sakai, T.5
Blaschke, F.6
Fleck, E.7
Van Herle, A.J.8
Forman, B.M.9
Law, R.E.10
-
38
-
-
0036864411
-
Sterol regulatory element-binding proteins: transcriptional activators of lipid synthesis
-
10.1042/BST0301091, 12440980
-
Horton JD. Sterol regulatory element-binding proteins: transcriptional activators of lipid synthesis. Biochem Soc Trans 2002, 30:1091-5. 10.1042/BST0301091, 12440980.
-
(2002)
Biochem Soc Trans
, vol.30
, pp. 1091-1095
-
-
Horton, J.D.1
-
39
-
-
4344610159
-
Regulation of group VIA phospholipase A2 expression by sterol availability
-
Seashols SJ, del Castillo Olivares A, Gil G, Barbour SE. Regulation of group VIA phospholipase A2 expression by sterol availability. Biochim Biophys Acta 2004, 1684:29-37.
-
(2004)
Biochim Biophys Acta
, vol.1684
, pp. 29-37
-
-
Seashols, S.J.1
del Castillo Olivares, A.2
Gil, G.3
Barbour, S.E.4
-
40
-
-
0036286540
-
Peroxisome proliferator-activated receptor gamma (PPARγ) as a novel target for prostate cancer
-
10.1023/A:1015670126203, 12099579
-
Smith MR, Kantoff PW. Peroxisome proliferator-activated receptor gamma (PPARγ) as a novel target for prostate cancer. Invest New Drugs 2002, 20:195-200. 10.1023/A:1015670126203, 12099579.
-
(2002)
Invest New Drugs
, vol.20
, pp. 195-200
-
-
Smith, M.R.1
Kantoff, P.W.2
-
41
-
-
33645794065
-
Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function
-
10.1152/physiolgenomics.00132.2005, 16091418
-
Loor JJ, Dann HM, Everts RE, Oliveira R, Green CA, Guretzky NA, Rodriguez-Zas SL, Lewin HA, Drackley JK. Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function. Physiol Genomics 2005, 23:217-26. 10.1152/physiolgenomics.00132.2005, 16091418.
-
(2005)
Physiol Genomics
, vol.23
, pp. 217-226
-
-
Loor, J.J.1
Dann, H.M.2
Everts, R.E.3
Oliveira, R.4
Green, C.A.5
Guretzky, N.A.6
Rodriguez-Zas, S.L.7
Lewin, H.A.8
Drackley, J.K.9
-
42
-
-
0035947708
-
Transcription factor AP-2 functions as a repressor that contributes to the liver-specific expression of serum amyloid A1 gene
-
10.1074/jbc.M010307200, 11278660
-
Ren Y, Liao WS. Transcription factor AP-2 functions as a repressor that contributes to the liver-specific expression of serum amyloid A1 gene. J Biol Chem 2001, 276:17770-8. 10.1074/jbc.M010307200, 11278660.
-
(2001)
J Biol Chem
, vol.276
, pp. 17770-17778
-
-
Ren, Y.1
Liao, W.S.2
-
43
-
-
84860506529
-
Mining ChIP-chip data for transcription factor and cofactor binding sites
-
10.1093/bioinformatics/bti1043, 15961485
-
Smith AD, Sumazin P, Das D, Zhang MQ. Mining ChIP-chip data for transcription factor and cofactor binding sites. Bioinformatics 2005, 21(Suppl 1):i403-12. 10.1093/bioinformatics/bti1043, 15961485.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Smith, A.D.1
Sumazin, P.2
Das, D.3
Zhang, M.Q.4
-
44
-
-
0035896572
-
Targeted disruption of the CP2 gene, a member of the NTF family of transcription factors
-
10.1074/jbc.M004351200, 10995745
-
Ramamurthy L, Barbour V, Tuckfield A, Clouston DR, Topham D, Cunningham JM, Jane SM. Targeted disruption of the CP2 gene, a member of the NTF family of transcription factors. J Biol Chem 2001, 276:7836-42. 10.1074/jbc.M004351200, 10995745.
-
(2001)
J Biol Chem
, vol.276
, pp. 7836-7842
-
-
Ramamurthy, L.1
Barbour, V.2
Tuckfield, A.3
Clouston, D.R.4
Topham, D.5
Cunningham, J.M.6
Jane, S.M.7
-
45
-
-
0037269158
-
Influence of changes in dietary fatty acids during pregnancy on placental and fetal fatty acid profile in the rat
-
10.1159/000067963, 12576758
-
Amusquivar E, Herrera E. Influence of changes in dietary fatty acids during pregnancy on placental and fetal fatty acid profile in the rat. Biol Neonate 2003, 83:136-45. 10.1159/000067963, 12576758.
-
(2003)
Biol Neonate
, vol.83
, pp. 136-145
-
-
Amusquivar, E.1
Herrera, E.2
-
46
-
-
33745020255
-
Maternal lipid metabolism and placental lipid transfer
-
Review., 10.1159/000091507, 16612115
-
Herrera E, Amusquivar E, López-Soldado I, Ortega H. Maternal lipid metabolism and placental lipid transfer. Horm Res 2006, 65(Suppl 3):59-64. Review., 10.1159/000091507, 16612115.
-
(2006)
Horm Res
, vol.65
, Issue.SUPPL. 3
, pp. 59-64
-
-
Herrera, E.1
Amusquivar, E.2
López-Soldado, I.3
Ortega, H.4
-
47
-
-
54349088438
-
The effect of labour and placental separation on the shedding of syncytiotrophoblast microparticles, cell-free DNA and mRNA in normal pregnancy and pre-eclampsia
-
10.1016/j.placenta.2008.08.018, 18834630
-
Reddy A, Zhong XY, Rusterholz C, Hahn S, Holzgreve W, Redman CW, Sargent IL. The effect of labour and placental separation on the shedding of syncytiotrophoblast microparticles, cell-free DNA and mRNA in normal pregnancy and pre-eclampsia. Placenta 2008, 29:942-9. 10.1016/j.placenta.2008.08.018, 18834630.
-
(2008)
Placenta
, vol.29
, pp. 942-949
-
-
Reddy, A.1
Zhong, X.Y.2
Rusterholz, C.3
Hahn, S.4
Holzgreve, W.5
Redman, C.W.6
Sargent, I.L.7
-
48
-
-
20844440048
-
Uterine Wnt/β-catenin signaling is required for implantation
-
10.1073/pnas.0500612102, 1150820, 15930138
-
Mohamed OA, Jonnaert M, Labelle-Dumais C, Kuroda K, Clarke HJ, Dufort D. Uterine Wnt/β-catenin signaling is required for implantation. Proc Natl Acad Sci USA 2005, 102:8579-84. 10.1073/pnas.0500612102, 1150820, 15930138.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 8579-8584
-
-
Mohamed, O.A.1
Jonnaert, M.2
Labelle-Dumais, C.3
Kuroda, K.4
Clarke, H.J.5
Dufort, D.6
-
49
-
-
0032896394
-
Accumulation of cyclooxygenase-2 gene transcripts in uterine tissues of pregnant and parturient cows: stimulation by oxytocin
-
10.1095/biolreprod60.2.341, 9916000
-
Fuchs AR, Rust W, Fields MJ. Accumulation of cyclooxygenase-2 gene transcripts in uterine tissues of pregnant and parturient cows: stimulation by oxytocin. Biol Reprod 1999, 60:341-8. 10.1095/biolreprod60.2.341, 9916000.
-
(1999)
Biol Reprod
, vol.60
, pp. 341-348
-
-
Fuchs, A.R.1
Rust, W.2
Fields, M.J.3
-
50
-
-
29244443269
-
Prostaglandin H2 synthase-1 and -2 expression in guinea pig gestational tissues during late pregnancy and parturition
-
10.1113/jphysiol.2005.098129, 1464277, 16239272
-
Welsh T, Mitchell CM, Walters WA, Mesiano S, Zakar T. Prostaglandin H2 synthase-1 and -2 expression in guinea pig gestational tissues during late pregnancy and parturition. J Physiol 2005, 569:903-12. 10.1113/jphysiol.2005.098129, 1464277, 16239272.
-
(2005)
J Physiol
, vol.569
, pp. 903-912
-
-
Welsh, T.1
Mitchell, C.M.2
Walters, W.A.3
Mesiano, S.4
Zakar, T.5
-
51
-
-
0026056918
-
DNA binding of purified transcription factor NF-κB. Affinity, specificity, Zn2+ dependence, and differential half-site recognition
-
Zabel U, Schreck R, Baeuerle PA. DNA binding of purified transcription factor NF-κB. Affinity, specificity, Zn2+ dependence, and differential half-site recognition. J Biol Chem 1991, 266:252-60.
-
(1991)
J Biol Chem
, vol.266
, pp. 252-260
-
-
Zabel, U.1
Schreck, R.2
Baeuerle, P.A.3
-
52
-
-
0032865810
-
Requirement of nuclear factor κB for the constitutive expression of nitric oxide synthase-2 and cyclooxygenase-2 in rat trophoblasts
-
Callejas NA, Casado M, Boscá L, Martín-Sanz P. Requirement of nuclear factor κB for the constitutive expression of nitric oxide synthase-2 and cyclooxygenase-2 in rat trophoblasts. J Cell Sci 1999, 112:3147-55.
-
(1999)
J Cell Sci
, vol.112
, pp. 3147-3155
-
-
Callejas, N.A.1
Casado, M.2
Boscá, L.3
Martín-Sanz, P.4
-
53
-
-
0033577994
-
Cooperation of Myb and Myc proteins in T cell lymphomagenesis
-
10.1038/sj.onc.1202956, 10380886
-
Davies J, Badiani P, Weston K. Cooperation of Myb and Myc proteins in T cell lymphomagenesis. Oncogene 1999, 18:3643-7. 10.1038/sj.onc.1202956, 10380886.
-
(1999)
Oncogene
, vol.18
, pp. 3643-3647
-
-
Davies, J.1
Badiani, P.2
Weston, K.3
-
54
-
-
29744461931
-
FGF signaling is necessary for establishing gut tube domains along the anterior-posterior axis in vivo
-
10.1016/j.mod.2005.10.001, 16326079
-
Dessimoz J, Opoka R, Kordich JJ, Grapin-Botton A, Wells JM. FGF signaling is necessary for establishing gut tube domains along the anterior-posterior axis in vivo. Mech Dev 2006, 123:42-55. 10.1016/j.mod.2005.10.001, 16326079.
-
(2006)
Mech Dev
, vol.123
, pp. 42-55
-
-
Dessimoz, J.1
Opoka, R.2
Kordich, J.J.3
Grapin-Botton, A.4
Wells, J.M.5
-
55
-
-
33644659923
-
Characterization of Asxl1, a murine homolog of Additional sex combs, and analysis of the Asx-like gene family
-
10.1016/j.gene.2005.10.033, 16412590
-
Fisher CL, Randazzo F, Humphries RK, Brock HW. Characterization of Asxl1, a murine homolog of Additional sex combs, and analysis of the Asx-like gene family. Gene 2006, 369:109-18. 10.1016/j.gene.2005.10.033, 16412590.
-
(2006)
Gene
, vol.369
, pp. 109-118
-
-
Fisher, C.L.1
Randazzo, F.2
Humphries, R.K.3
Brock, H.W.4
-
56
-
-
0032536787
-
The transcription factor interferon regulatory factor 1 (IRF-1) is important during the maturation of natural killer 1.1+ T cell receptor-α/β+ (NK1+ T) cells, natural killer cells, and intestinal intraepithelial T cells
-
10.1084/jem.187.6.967, 2212195, 9500799
-
Ohteki T, Yoshida H, Matsuyama T, Duncan GS, Mak TW, Ohashi PS. The transcription factor interferon regulatory factor 1 (IRF-1) is important during the maturation of natural killer 1.1+ T cell receptor-α/β+ (NK1+ T) cells, natural killer cells, and intestinal intraepithelial T cells. J Exp Med 1998, 187:967-72. 10.1084/jem.187.6.967, 2212195, 9500799.
-
(1998)
J Exp Med
, vol.187
, pp. 967-972
-
-
Ohteki, T.1
Yoshida, H.2
Matsuyama, T.3
Duncan, G.S.4
Mak, T.W.5
Ohashi, P.S.6
-
57
-
-
0034724185
-
Adaptive diversification within a large family of recently duplicated, placentally expressed genes
-
10.1073/pnas.050002797, 16237, 10725351
-
Hughes AL, Green JA, Garbayo JM, Roberts RM. Adaptive diversification within a large family of recently duplicated, placentally expressed genes. Proc Natl Acad Sci USA 2000, 97:3319-23. 10.1073/pnas.050002797, 16237, 10725351.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 3319-3323
-
-
Hughes, A.L.1
Green, J.A.2
Garbayo, J.M.3
Roberts, R.M.4
-
58
-
-
0030679766
-
The diversity and evolutionary relationships of the pregnancy-associated glycoproteins, an aspartic proteinase subfamily consisting of many trophoblast-expressed genes
-
10.1073/pnas.94.24.12809, 24220, 9371757
-
Xie S, Green J, Bixby JB, Szafranska B, DeMartini JC, Hecht S, Roberts RM. The diversity and evolutionary relationships of the pregnancy-associated glycoproteins, an aspartic proteinase subfamily consisting of many trophoblast-expressed genes. Proc Natl Acad Sci USA 1997, 94:12809-16. 10.1073/pnas.94.24.12809, 24220, 9371757.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 12809-12816
-
-
Xie, S.1
Green, J.2
Bixby, J.B.3
Szafranska, B.4
DeMartini, J.C.5
Hecht, S.6
Roberts, R.M.7
-
59
-
-
34548132431
-
Interferon-tau, a Type 1 interferon involved in maternal recognition of pregnancy
-
10.1016/j.cytogfr.2007.06.010, 2000448, 17662642
-
Roberts RM. Interferon-tau, a Type 1 interferon involved in maternal recognition of pregnancy. Cytokine Growth Factor Rev 2007, 18:403-8. 10.1016/j.cytogfr.2007.06.010, 2000448, 17662642.
-
(2007)
Cytokine Growth Factor Rev
, vol.18
, pp. 403-408
-
-
Roberts, R.M.1
-
60
-
-
33746424312
-
Rapid evolution of the trophoblast kunitz domain proteins (TKDPs)-a multigene family in ruminant ungulates
-
10.1007/s00239-005-0264-3, 16830095
-
Chakrabarty A, MacLean JA, Hughes AL, Roberts RM, Green JA. Rapid evolution of the trophoblast kunitz domain proteins (TKDPs)-a multigene family in ruminant ungulates. J Mol Evol 2006, 63:274-82. 10.1007/s00239-005-0264-3, 16830095.
-
(2006)
J Mol Evol
, vol.63
, pp. 274-282
-
-
Chakrabarty, A.1
MacLean, J.A.2
Hughes, A.L.3
Roberts, R.M.4
Green, J.A.5
-
61
-
-
77951166344
-
Laboratory of Mammalian Genome Biology
-
Laboratory of Mammalian Genome Biology. , http://lewinlab.igb.uiuc.edu/Research/NovelGenes.html
-
-
-
-
62
-
-
77951149960
-
GeneSpring
-
GeneSpring. , http://www.chem.agilent.com/scripts/pds.asp?lpage=27881
-
-
-
-
63
-
-
77951174104
-
SAS
-
SAS. , http://www.sas.com
-
-
-
-
64
-
-
0034370950
-
On the adaptive control of the false discovery fate in multiple testing with independent statistics
-
Benjamini Y, Hochberg Y. On the adaptive control of the false discovery fate in multiple testing with independent statistics. J Educ Behav Stats 2000, 25:60-83.
-
(2000)
J Educ Behav Stats
, vol.25
, pp. 60-83
-
-
Benjamini, Y.1
Hochberg, Y.2
-
65
-
-
46249087720
-
UCSC Browser
-
UCSC Browser. , http://genome.ucsc.edu
-
-
-
-
66
-
-
0041853625
-
MATCH: A tool for searching transcription factor binding sites in DNA sequences
-
10.1093/nar/gkg585, 169193, 12824369
-
Kel AE, Gössling E, Reuter I, Cheremushkin E, Kel-Margoulis OV, Wingender E. MATCH: A tool for searching transcription factor binding sites in DNA sequences. Nucleic Acids Res 2003, 31:3576-9. 10.1093/nar/gkg585, 169193, 12824369.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3576-3579
-
-
Kel, A.E.1
Gössling, E.2
Reuter, I.3
Cheremushkin, E.4
Kel-Margoulis, O.V.5
Wingender, E.6
-
67
-
-
0037208166
-
TRANSFAC: transcriptional regulation, from patterns to profiles
-
10.1093/nar/gkg108, 165555, 12520026
-
Matys V, Fricke E, Geffers R, Gössling E, Haubrock M, Hehl R, Hornischer K, Karas D, Kel AE, Kel-Margoulis OV, Kloos DU, Land S, Lewicki-Potapov B, Michael H, Münch R, Reuter I, Rotert S, Saxel H, Scheer M, Thiele S, Wingender E. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res 2003, 31:374-8. 10.1093/nar/gkg108, 165555, 12520026.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 374-378
-
-
Matys, V.1
Fricke, E.2
Geffers, R.3
Gössling, E.4
Haubrock, M.5
Hehl, R.6
Hornischer, K.7
Karas, D.8
Kel, A.E.9
Kel-Margoulis, O.V.10
Kloos, D.U.11
Land, S.12
Lewicki-Potapov, B.13
Michael, H.14
Münch, R.15
Reuter, I.16
Rotert, S.17
Saxel, H.18
Scheer, M.19
Thiele, S.20
Wingender, E.21
more..
-
68
-
-
34447506667
-
Quantifying similarity between motifs
-
10.1186/gb-2007-8-2-r24, 1852410, 17324271
-
Gupta S, Stamatoyannopoulos JA, Bailey TL, Noble WS. Quantifying similarity between motifs. Genome Biol 2007, 8:R24-32. 10.1186/gb-2007-8-2-r24, 1852410, 17324271.
-
(2007)
Genome Biol
, vol.8
-
-
Gupta, S.1
Stamatoyannopoulos, J.A.2
Bailey, T.L.3
Noble, W.S.4
-
69
-
-
22344457014
-
EnoLOGOS: a versatile web tool for energy normalized sequence logos
-
10.1093/nar/gki439, 1160200, 15980495
-
Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV. enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Res 2005, 33:W389-92. 10.1093/nar/gki439, 1160200, 15980495.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Workman, C.T.1
Yin, Y.2
Corcoran, D.L.3
Ideker, T.4
Stormo, G.D.5
Benos, P.V.6
-
70
-
-
33745152719
-
Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression
-
10.1101/gr.4866006, 1457048, 16606704
-
Blanchette M, Bataille AR, Chen X, Poitras C, Laganière J, Lefèbvre C, Deblois G, Giguère V, Ferretti V, Bergeron D, Coulombe B, Robert F. Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression. Genome Res 2006, 16:656-68. 10.1101/gr.4866006, 1457048, 16606704.
-
(2006)
Genome Res
, vol.16
, pp. 656-668
-
-
Blanchette, M.1
Bataille, A.R.2
Chen, X.3
Poitras, C.4
Laganière, J.5
Lefèbvre, C.6
Deblois, G.7
Giguère, V.8
Ferretti, V.9
Bergeron, D.10
Coulombe, B.11
Robert, F.12
-
71
-
-
23944458138
-
A general framework for weighted gene co-expression network analysis
-
Zhang B, Horvath S. A general framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol 2005, 4:Article17.
-
(2005)
Stat Appl Genet Mol Biol
, vol.4
-
-
Zhang, B.1
Horvath, S.2
-
72
-
-
0030656245
-
Overlapping DNA recognition motifs between Sp1 and a novel trans -acting factor within the wt1 tumour suppressor gene promoter
-
10.1093/nar/25.21.4314, 147031, 9336463
-
Discenza MT, Dehbi M, Pelletier J. Overlapping DNA recognition motifs between Sp1 and a novel trans -acting factor within the wt1 tumour suppressor gene promoter. Nucleic Acids Res 1997, 25:4314-22. 10.1093/nar/25.21.4314, 147031, 9336463.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4314-4322
-
-
Discenza, M.T.1
Dehbi, M.2
Pelletier, J.3
-
73
-
-
0031561104
-
Detection of mouse skeletal muscle-specific product, which includes ZF5 zinc fingers and a VP16 acidic domain, by reverse transcriptase PCR
-
10.1006/bbrc.1997.6769, 9223418
-
Numoto M, Yokoro K, Yasuda S, Yanagihara K, Niwa O. Detection of mouse skeletal muscle-specific product, which includes ZF5 zinc fingers and a VP16 acidic domain, by reverse transcriptase PCR. Biochem Biophys Res Commun 1997, 236:20-5. 10.1006/bbrc.1997.6769, 9223418.
-
(1997)
Biochem Biophys Res Commun
, vol.236
, pp. 20-25
-
-
Numoto, M.1
Yokoro, K.2
Yasuda, S.3
Yanagihara, K.4
Niwa, O.5
-
74
-
-
18844440145
-
Common regulatory elements in the polycystic kidney disease 1 and 2 promoter regions
-
10.1038/sj.ejhg.5201392, 15770226
-
Lantinga-van Leeuwen IS, Leonhard WN, Dauwerse H, Baelde HJ, van Oost BA, Breuning MH, Peters DJ. Common regulatory elements in the polycystic kidney disease 1 and 2 promoter regions. Eur J Hum Genet 2005, 13:649-59. 10.1038/sj.ejhg.5201392, 15770226.
-
(2005)
Eur J Hum Genet
, vol.13
, pp. 649-659
-
-
Lantinga-van Leeuwen, I.S.1
Leonhard, W.N.2
Dauwerse, H.3
Baelde, H.J.4
van Oost, B.A.5
Breuning, M.H.6
Peters, D.J.7
-
75
-
-
49749105952
-
Computational identification of transcription frameworks of early committed spermatogenic cells
-
10.1007/s00438-008-0361-2, 18615256
-
Lalancette C, Platts AE, Lu Y, Lu S, Krawetz SA. Computational identification of transcription frameworks of early committed spermatogenic cells. Mol Genet Genomics 2008, 280:263-74. 10.1007/s00438-008-0361-2, 18615256.
-
(2008)
Mol Genet Genomics
, vol.280
, pp. 263-274
-
-
Lalancette, C.1
Platts, A.E.2
Lu, Y.3
Lu, S.4
Krawetz, S.A.5
-
76
-
-
34249893963
-
High expression of survivin and down-regulation of Stat-3 characterize the feto-maternal interface in failing murine pregnancies during the implantation period
-
10.1016/j.placenta.2006.09.010, 17113145
-
Garcia MG, Tirado-Gonzalez I, Handjiski B, Tometten M, Orsal AS, Hajos SE, Fernández N, Arck PC, Blois SM. High expression of survivin and down-regulation of Stat-3 characterize the feto-maternal interface in failing murine pregnancies during the implantation period. Placenta 2007, 28:650-7. 10.1016/j.placenta.2006.09.010, 17113145.
-
(2007)
Placenta
, vol.28
, pp. 650-657
-
-
Garcia, M.G.1
Tirado-Gonzalez, I.2
Handjiski, B.3
Tometten, M.4
Orsal, A.S.5
Hajos, S.E.6
Fernández, N.7
Arck, P.C.8
Blois, S.M.9
-
77
-
-
0036893336
-
Oct-1 is involved in the transcriptional repression of the gonadotropin-releasing hormone receptor gene
-
10.1210/en.2002-220576, 12446597
-
Cheng CK, Yeung CM, Hoo RL, Chow BK, Leung PC. Oct-1 is involved in the transcriptional repression of the gonadotropin-releasing hormone receptor gene. Endocrinology 2002, 143:4693-701. 10.1210/en.2002-220576, 12446597.
-
(2002)
Endocrinology
, vol.143
, pp. 4693-4701
-
-
Cheng, C.K.1
Yeung, C.M.2
Hoo, R.L.3
Chow, B.K.4
Leung, P.C.5
-
78
-
-
0027768301
-
Specific expression of cellular oncogenes c-my c and c-myb in T-cell lines established from three types of bovine lymphosarcomas
-
Ishiguro N, Matsui T, Shinagawa M. Specific expression of cellular oncogenes c-my c and c-myb in T-cell lines established from three types of bovine lymphosarcomas. Am J Vet Res 1993, 54:2010-4.
-
(1993)
Am J Vet Res
, vol.54
, pp. 2010-2014
-
-
Ishiguro, N.1
Matsui, T.2
Shinagawa, M.3
-
79
-
-
51349121407
-
The Transcription Factor PLZF Directs the Effector Program of the NKT Cell Lineage
-
10.1016/j.immuni.2008.07.011, 18631448
-
Savage AK, Constantinides MG, Han J, Picard D, Martin E, Li B, Lantz O, Bendelac A. The Transcription Factor PLZF Directs the Effector Program of the NKT Cell Lineage. Immunity 2008, 29:1-13. 10.1016/j.immuni.2008.07.011, 18631448.
-
(2008)
Immunity
, vol.29
, pp. 1-13
-
-
Savage, A.K.1
Constantinides, M.G.2
Han, J.3
Picard, D.4
Martin, E.5
Li, B.6
Lantz, O.7
Bendelac, A.8
|