메뉴 건너뛰기




Volumn , Issue , 2009, Pages 91-100

FlowNet: Flow-based approach for efficient analysis of complex biological networks

Author keywords

Biological networks; Flow based approach; Graph clustering

Indexed keywords

BIOLOGICAL COMPONENTS; BIOLOGICAL NETWORKS; COMPLEX NETWORKS; DYNAMIC FLOWS; EFFICIENT ANALYSIS; FUNCTIONAL MODULES; GRAPH CLUSTERING; HIDDEN KNOWLEDGE; INFLUENCE MODEL; NETWORK ANALYSIS; REAL APPLICATIONS; SIMULATION ALGORITHMS; SPARSE NETWORK; STRUCTURAL BEHAVIORS; THEORETICAL MODELING; WEIGHTED NETWORKS; WEIGHTING SCHEME; YEAST PROTEINS;

EID: 77951148543     PISSN: 15504786     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICDM.2009.39     Document Type: Conference Paper
Times cited : (12)

References (34)
  • 1
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of 'small-world' networks
    • Watts, D.J. and Strogatz, S.H., "Collective dynamics of 'small-world' networks," Nature, vol. 393, pp. 440-442, 1998.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 2
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi, A.-L. and Albert, R., "Emergence of scaling in random networks," Science, vol. 286, pp. 509-511, 1999.
    • (1999) Science , vol.286 , pp. 509-511
    • Barabasi, A.-L.1    Albert, R.2
  • 3
    • 34347329333 scopus 로고    scopus 로고
    • In search of the biological significance of modular structures in protein networks
    • Wang, Z. and Zhang, J., "In search of the biological significance of modular structures in protein networks," PLoS Computational Biology, vol. 3, no. 6, 2007.
    • (2007) PLoS Computational Biology , vol.3 , Issue.6
    • Wang, Z.1    Zhang, J.2
  • 4
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi, A.-L. and Oltvai, Z.N., "Network biology: understanding the cell's functional organization," Nature Reviews: Genetics, vol. 5, pp. 101-113, 2004.
    • (2004) Nature Reviews: Genetics , vol.5 , pp. 101-113
    • Barabasi, A.-L.1    Oltvai, Z.N.2
  • 7
    • 0142059836 scopus 로고    scopus 로고
    • Protein complexes and functional modules in molecular networks
    • Spirin, V. and Mirny, L.A., "Protein complexes and functional modules in molecular networks," Proc. Natl. Acad. Sci. USA, vol. 100, no. 21, pp. 12 123-12 128, 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , Issue.21 , pp. 12123-12128
    • Spirin, V.1    Mirny, L.A.2
  • 8
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader, G.D. and Hogue, C.W., "An automated method for finding molecular complexes in large protein interaction networks," BMC Bioinformatics, vol. 4, p. 2, 2003.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 9
    • 20444504323 scopus 로고    scopus 로고
    • Uncovering the overlapping community structure of complex networks in nature and society
    • Palla, G., Derenyi, I., Farkas, I. and Vicsek, T., "Uncovering the overlapping community structure of complex networks in nature and society," Nature, vol. 435, pp. 814-818, 2005.
    • (2005) Nature , vol.435 , pp. 814-818
    • Palla, G.1    Derenyi, I.2    Farkas, I.3    Vicsek, T.4
  • 10
    • 33744805096 scopus 로고    scopus 로고
    • Development and implementation of an algorithm for detection of protein complexes in large interaction networks
    • Altaf-Ul-Amin, M., Shinbo, Y., Mihara, K., Kurokawa, K. and Kanaya, S., "Development and implementation of an algorithm for detection of protein complexes in large interaction networks," BMC Bioinformatics, vol. 7, p. 207, 2006.
    • (2006) BMC Bioinformatics , vol.7 , pp. 207
    • Altaf-Ul-Amin, M.1    Shinbo, Y.2    Mihara, K.3    Kurokawa, K.4    Kanaya, S.5
  • 11
    • 34248396293 scopus 로고    scopus 로고
    • Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations
    • Zotenko, E., Guimaraes, K.S., Jothi, R. and Przytycka, T.M., "Decomposition of overlapping protein complexes: a graph theoretical method for analyzing static and dynamic protein associations," Algorithms for Molecular Biology, vol. 1, p. 7, 2006.
    • (2006) Algorithms for Molecular Biology , vol.1 , pp. 7
    • Zotenko, E.1    Guimaraes, K.S.2    Jothi, R.3    Przytycka, T.M.4
  • 12
    • 33947109414 scopus 로고    scopus 로고
    • A "seed-refine" algorithm for detecting protein complexes from protein interaction data
    • Pei, P. and Zhang, A., "A "seed-refine" algorithm for detecting protein complexes from protein interaction data," IEEE Transactions on Nanobioscience, vol. 6, no. 1, pp. 43-50, 2007.
    • (2007) IEEE Transactions on Nanobioscience , vol.6 , Issue.1 , pp. 43-50
    • Pei, P.1    Zhang, A.2
  • 13
    • 10244264813 scopus 로고    scopus 로고
    • Protein complex prediction via cost-based clustering
    • King, A.D., Przulj, N. and Jurisica, I., "Protein complex prediction via cost-based clustering," Bioinformatics, vol. 20, no. 17, pp. 3013-3020, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3013-3020
    • King, A.D.1    Przulj, N.2    Jurisica, I.3
  • 14
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright, A.J., van Dongen, S. and Ouzounis, C.A., "An efficient algorithm for large-scale detection of protein families," Nucleic Acids Research, vol. 30, no. 7, pp. 1575-1584, 2002.
    • (2002) Nucleic Acids Research , vol.30 , Issue.7 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 15
    • 39749149026 scopus 로고    scopus 로고
    • CASCADE: A novel quasi all path-based network analysis algorithm for clustering biological interactions
    • Hwang, W., Cho, Y.-R., Zhang, A. and Ramanathan, M., "CASCADE: a novel quasi all path-based network analysis algorithm for clustering biological interactions," BMC Bioinformatics, vol. 9, p. 64, 2008.
    • (2008) BMC Bioinformatics , vol.9 , pp. 64
    • Hwang, W.1    Cho, Y.-R.2    Zhang, A.3    Ramanathan, M.4
  • 16
    • 0037417817 scopus 로고    scopus 로고
    • Modular organization of cellular networks
    • Rives, A.W. and Galitski, T., "Modular organization of cellular networks," Proc. Natl. Acad. Sci. USA, vol. 100, no. 3, pp. 1128-1133, 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , Issue.3 , pp. 1128-1133
    • Rives, A.W.1    Galitski, T.2
  • 17
    • 0037447257 scopus 로고    scopus 로고
    • Assessing experimentally derived interactions in a small world
    • Goldberg, D.S. and Roth, F.P., "Assessing experimentally derived interactions in a small world," Proc. Natl. Acad. Sci. USA, vol. 100, no. 8, pp. 4372-4376, 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , Issue.8 , pp. 4372-4376
    • Goldberg, D.S.1    Roth, F.P.2
  • 18
    • 0242268461 scopus 로고    scopus 로고
    • Predicting protein functions from redundancies in large-scale protein interaction networks
    • Samanta, M.P. and Liang, S., "Predicting protein functions from redundancies in large-scale protein interaction networks," Proc. Natl. Acad. Sci. USA, vol. 100, no. 22, pp. 12 579-12 583, 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , Issue.22 , pp. 12579-12583
    • Samanta, M.P.1    Liang, S.2
  • 19
    • 13844264514 scopus 로고    scopus 로고
    • Iterative cluster analysis of protein interaction data
    • Arnau, V., Mars, S. and Marin, I., "Iterative cluster analysis of protein interaction data," Bioinformatics, vol. 21, no. 3, pp. 364-378, 2005.
    • (2005) Bioinformatics , vol.21 , Issue.3 , pp. 364-378
    • Arnau, V.1    Mars, S.2    Marin, I.3
  • 20
    • 42749100809 scopus 로고    scopus 로고
    • Fast algorithm for detecting community structure in networks
    • Newman, M.E.J., "Fast algorithm for detecting community structure in networks," Physical Review E, vol. 69, p. 066133, 2004.
    • (2004) Physical Review E , vol.69 , pp. 066133
    • Newman, M.E.J.1
  • 21
  • 22
    • 0034515528 scopus 로고    scopus 로고
    • A clustering algorithm based on graph connectivity
    • Hartuv, E. and Shamir, R., "A clustering algorithm based on graph connectivity," Information Processing Letters, vol. 76, pp. 175-181, 2000.
    • (2000) Information Processing Letters , vol.76 , pp. 175-181
    • Hartuv, E.1    Shamir, R.2
  • 23
    • 0042635247 scopus 로고    scopus 로고
    • Scientific collaboration networks. II. Shortest paths, weighted networks and centrality
    • Newman, M.E.J., "Scientific collaboration networks. II. Shortest paths, weighted networks and centrality," Physical Review E, vol. 64, p. 016132, 2001.
    • (2001) Physical Review E , vol.64 , pp. 016132
    • Newman, M.E.J.1
  • 24
    • 0037062448 scopus 로고    scopus 로고
    • Community structure in social and biological networks
    • Girvan, M. and Newman, M.E.J., "Community structure in social and biological networks," Proc. Natl. Acad. Sci. USA, vol. 99, no. 12, pp. 7821-7826, 2002.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , Issue.12 , pp. 7821-7826
    • Girvan, M.1    Newman, M.E.J.2
  • 32
    • 84984996500 scopus 로고    scopus 로고
    • The Gene Ontology project in 2008
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium, "The Gene Ontology project in 2008," Nucleic Acids Research, vol. 36, pp. D440-D444, 2008.
    • (2008) Nucleic Acids Research , vol.36
  • 34
    • 25444490121 scopus 로고    scopus 로고
    • The use of edge-betweenness clustering to investigate biological function in protein interaction networks
    • Dunn, R., Dudbridge, F. and Sanderson, C.M., "The use of edge-betweenness clustering to investigate biological function in protein interaction networks," BMC Bioinformatics, vol. 6, 2005.
    • (2005) BMC Bioinformatics , vol.6
    • Dunn, R.1    Dudbridge, F.2    Sanderson, C.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.