Focus on polyploidy

New Phytologist

Volumn 186, Issue 1, 2010, Pages 1-4

  Ainouche, Malika L ^a   Jenczewski, Eric ^b  

^a UNIVERSITÉ DE RENNES 1   (France)

^b INSTITUT JEAN PIERRE BOURGIN   (France)

Author keywords

Adaptation; Epigenetics; Genome evolution; Meiosis; Polyploidy; Recombination; Speciation; Transcriptomics; Transposable elements

Indexed keywords

BIODIVERSITY; GENE EXPRESSION REGULATION; GENETICS; NOTE; PLANT; PLANT GENOME; POLYPLOIDY;

BIODIVERSITY; GENE EXPRESSION REGULATION, PLANT; GENOME, PLANT; PLANTS; POLYPLOIDY;

EID: 77950946691     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2010.03215.x     Document Type: Note

References (41)

1. Ainouche ML, Fortune P, Salmon A, Parisod C, Grandbastien M-A, Fukunaga K, Ricou M, Misset MT. Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae). Biological Invasion 2009, 11:1159-1173.
2. Birchler JA, Veitia RA. The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution. New Phytologist 2010, 186:54-62.
3. Brennan AC, Hiscock SJ. Expression and inheritance of sporophytic self-incompatibility in synthetic allohexaploid Senecio cambrensis (Asteraceae). New Phytologist 2010, 186:251-261.
4. Buggs RJA, Elliot NM, Zhang L, Koh J, Viccini LF, Soltis DE, Soltis PS. Tissue-specific silencing of homeologs in natural populations of the recent allopolyploid Tragopogon mirus. New Phytologist 2010, 186:175-183.
5. Chapman MA, Abbott RJ. Introgression of fitness genes across a ploidy barrier. New Phytologist 2010, 186:63-71.
6. Chelaifa H, Monnier A, Ainouche ML. Transcriptomic changes following recent natural hybridization and allopolyploidy in the salt marsh species Spartina × townsendii and Spartina anglica (Poaceae). New Phytologist 2010, 186:161-174.
7. Chen ZJ. Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. Annual Review of Plant Biology 2007, 58:377-406.
8. Cifuentes M, Grandont L, Moore G, Chèvre A-M, Jenczewski E. Genetic regulation of meiosis in polyploid species: new insights into an old question. New Phytologist 2010, 186:29-36.
9. Cui L, Wall PK, Leebens-Mack JH, Lindsay BG, Soltis DE, Doyle JJ, Carlson JE, Arugumanathan K, Barakat A, Albert VA. Widespread genome duplications throughout the history of flowering plants. Genome Research 2006, 16:738-749.
10. Doyle JJ, Egan AN. Dating the origins of polyploidy events. New Phytologist 2010, 186:73-85.
11. Doyle JJ, Flagel LE, Paterson AH, Rapp RA, Soltis DE, Soltis PS, Wendel JF. Evolutionary Genetics of Genome Merger and Doubling in Plants. Annual Review of Genetics 2008, 42:443-461.
12. Dubkovsky J, Dvorak J. Genome plasticity a key factor in the success of polyploid wheat under domestication. Science 2007, 316:1862-1866.
13. Fawcett J, Maere S, VandePeer Y. Plants with double genomes might have a better chance to survive the Cretaceous-Tertiary exctinction event. Proceedings of the National Academy of Sciences, USA 2009, 106:5735-5742.
14. Flagel LE, Wendel JF. Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation. New Phytologist 2010, 186:184-193.
15. Gaeta RT, Pires JC. Homoeologous recombination in allopolyploids: the polyploid ratchet. New Phytologist 2010, 186:18-28.
16. Henry Y, Bedhomme M, Blanc G. History, protohistory and prehistory of the Arabidopsis thaliana chromosome complement. Trends in Plant Science 2006, 11:6.
17. Koukalova B, Moraes AP, Renny-Byfield S, Matyasek R, Leitch AR, Kovarik A. Fall and rise of satellite repeats in allopolyploids of Nicotiana over c. 5 million years. New Phytologist 2010, 186:148-160.
18. Lackey E, Ng DW-K, Chen ZJ. RNAi-mediated down-regulation of DCL1 and AGO1 induces developmental changes in resynthesized Arabidopsis allotetraploids. New Phytologist 2010, 186:207-215.
19. Le Comber SC, Ainouche ML, Kovarik A, Leitch AR. Making a functional diploid: from polysomic to disomic inheritance. New Phytologist 2010, 186:113-122.
20. Leitch AR, Soltis DE, Soltis PS, Leitch IJ, Pires JC. Biological relevance of polyploidy: ecology to genomics. Biological Journal of the Linnean Society 2004, 82. Special issue based on the International polyploidy Conference April 2003, Linnean Society of London and Royal Botanic Gardens, Kew UK
21. Lewis WH. Polyploidy: biological relevance 1980, New York, NY, USA, Plenum Press
22. Marmagne A, Brabant P, Thiellement H, Alix K. Analysis of gene expression in resynthesized Brassica napus allotetraploids: transcriptional changes do not explain differential protein regulation. New Phytologist 2010, 186:216-227.
23. Martienssen R. Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interpolyploid hybrids of Arabidopsis. New Phytologist 2010, 186:46-53.
24. McCullough E, Wright KM, Alvarez A, Clark CP, Rickoll WL, Madlung A. Photoperiod-dependent floral reversion in the natural allopolyploid Arabidopsis suecica. New Phytologist 2010, 186:239-250.
25. Mestiri I, Chagué V, Tanguy A-M, Huneau C, Huteau V, Belcram H, Coriton O, Chalhoub B, Jahier J. Newly synthesized wheat allohexaploids display progenitor-dependant meiotic stability and aneuploidy but structural genomic additivity. New Phytologist 2010, 186:86-101.
26. Nah G, Chen ZJ. Tandem duplication of the FLC locus and the origin of a new gene in Arabidopsis related species and their functional implications in allopolyploids. New Phytologist 2010, 186:228-238.
27. Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V. Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics 2003, 19:141-147.
28. Otto SP. The evolutionary consequences of polyploidy. Cell 2007, 131:452-462.
29. Parisod C, Alix K, Just J, Petit M, Sarilar V, Mhiri C, Ainouche ML, Chalhoub B, Grandbastien M-A. Impact of transposable elements on the organization and function of allopolyploid genomes. New Phytologist 2010b, 186:37-45.
30. Parisod C, Holderegger R, Brochmann C. Evolutionary consequences of autopolyploidy. New Phytologist 2010a, 186:5-17.
31. Parisod C, Salmon A, Zerjal T, Tenaillon M, Grandbastien MA, Ainouche M. Rapid structural and epigenetic reorganization near Transposable Elements in hybrid and allopolyploid genomes in Spartina. New Phytologist 2009, 184:1003-1015.
32. Petit M, Guidat C, Daniel J, Denis E, Montoriol E, Bui QT, Lim KY, Kovarik A, Leitch AR, Grandbastien M-A. Mobilization of retrotransposons in synthetic allotetraploid tobacco. New Phytologist 2010, 186:135-147.
33. Pignatta D, Dilkes BP, Yoo S-Y, Henry IM, Madlung A, Doerge RW, Chen ZJ, Comai L. Differential sensitivity of the Arabidopsis thaliana transcriptome and enhancers to the effects of genome doubling. New Phytologist 2010, 186:194-206.
34. Salmon A, Flagel L, Ying B, Udall JA, Wendel JF. Homoeologous nonreciprocal recombination in polyploid cotton. New Phytologist 2010, 186:123-134.
35. Soltis DE, Albert VA, leebens-Mack J, Bell CD, paterson AH, Zheng C, Sankoff D, DePamphilis CW, Wall PK, Soltis PS. Polyploidy and angiosperm diversification. American Journal of Botany 2009, 96:336-348.
36. Szadkowski E, Eber F, Huteau V, Lodé M, Huneau C, Belcram H, Coriton O, Manzanares-Dauleux MJ, Delourme R, King GJ. The first meiosis of resynthesized Brassica napus, a genome blender. New Phytologist 2010, 186:102-112.
37. Van de Peer Y, Maere S, Meyer A. The evolutionary significance of ancient genome duplications. Nature Reviews Genetics 2009, 10:725-732.
38. Wang J, Lee JJ, Tian L, Lee HS, Chen M, Rao S, Wei EN, Doergue RW, Comai L, Chen ZJ. Methods for genome-wide analysis of gene expression changes in polyploids. Methods in Enzymology 2005, 395:570-596.
39. Wendel JF. Genome evolution in polyploids. Plant Molecular Biology 2000, 42:225-249.
40. Wendel JF, Doyle JJ. Polyploidy and evolution in plants. Plant diversity and evolution: genotypic and phenotypic variation in higher plants 2005, 97-117. Henry RJ, In, ed, Cambridge, MA, USA, CABI Publishing
41. Wood TE, Takebayashi N, Barker MS, Mayrose I, Greenspoon PB, Rieseberg LH. The frequency of polyploid speciation in vascular plants. Proceedings of the National Academy of Sciences, USA 2009, 106:13875-13879.