DNA-based methods for eriophyoid mite studies: Review, critical aspects, prospects and challenges

Experimental and Applied Acarology

Volumn 51, Issue 1, 2010, Pages 257-271

  Navajas, Maria ^a   Navia, Denise ^b  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^b EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA   (Brazil)

Author keywords

Cryptic species; DNA; Eriophyoidea; Invasive species; Molecular systematics; Pest management; Phylogeny

Indexed keywords

DNA;

BIOCONTROL AGENT; BIOTYPE; COLONIZATION; CROP PEST; GENETIC ANALYSIS; GENETIC MARKER; HERBIVORE; HOST PLANT; HYPOTHESIS TESTING; INVASIVE SPECIES; MITE; PHYLOGENETICS; VIRUS;

ANIMAL; CHEMISTRY; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; MITE; PHYLOGENY; POLYMERASE CHAIN REACTION; REVIEW;

ANIMALS; DNA; GENETIC VARIATION; MITES; PHYLOGENY; POLYMERASE CHAIN REACTION;

ACARI; ERIOPHYOIDEA;

EID: 77950691054     PISSN: 01688162     EISSN: 15729702     Source Type: Journal    
DOI: 10.1007/s10493-009-9301-z     Document Type: Review

References (64)

1. Amrine JW Jr, De Lillo E (2006) A database on Eriophyoidea of the world. West Virginia University.
2. Behura SK (2006) Molecular marker systems in insects: current trends and future avenues. Mol Ecol 15: 3087-3113.
3. Ben-Ali Z, Boursot P, Said K, Lagnel J, Chatti N, Navajas M (2000) Comparaison of ribosomal ITS regions among Androctonus spp. scorpions (Scorpionida: Buthidae) from Tunisia. J Med Entomol 37: 787-790.
4. Ben-David T, Melamed S, Gerson U, Morin S (2007) ITS2 sequences as barcodes for identifying and analyzing spider mites (Acari: Tetranychidae). Exp Appl Acarol 41: 169-181.
5. Bridge PD, Spooner BM, Panchal G (2003) On the unreliability of published DNA sequences. New Phytol 160: 43-48.
6. Carbonnelle S, Hance T, Migeon A, Baret PV, Cros-Arteil S, Navajas M (2007) Microsatellite markers reveal spatial genetic structure of Tetranychus urticae (Acari: Tetranychidae) populations along a latitudinal gradient in Europe. Exp Appl Acarol 41: 225-241.
7. Carew ME, Goodisman MAD, Hoffmann AA (2004) Species status and population genetic structure of grapevine eriophyoid mites. Entomol Exp Appl 111: 87-96.
8. Carew M, Schiffer M, Umina P, Weeks A, Hoffmann A (2009) Molecular markers indicate that the wheat curl mite, Aceria tosichella Keifer, may represent a species complex in Australia. Bull Entomol Res 99: 479-486.
9. Caterino MS, Cho S, Sperling FAH (2000) The current state of insect molecular systematics: a thriving tower of Babel. Ann Rev Entomol 45: 1-54.
10. Cusson M (2008) The molecular biology toolbox and its use in basic and applied insect science. Bioscience 58: 691-700.
11. Dabert J, Ehrnsberger R, Dabert M (2008) Glaucalges tytonis sp. n. (Analgoidea, Xolalgidae) from the barn owl Tyto alba (Strigiformes, Tytonidae): compiling morphology with DNA barcode data for taxon descriptions in mites (Acari). Zootaxa 1719: 11.
12. Darling JA, Blum MJ (2007) DNA-based methods for monitoring invasive species: a review and prospectus. Biol Invasions 9: 751-765.
13. De Lillo E, Duso C (1996) Currants and berries. In: Lindquist EE, Sabelis MW, Bruin J (eds) Eriophyoid mites-their biology, natural enemies and control. Elsevier, Amsterdam, pp 583-591.
14. DeSalle R, Egan MG, Siddall M (2005) The unholy trinity: taxonomy, species delimitation and DNA barcoding. Philos Trans R Soc Lond B Biol Sci 360: 1905-1916.
15. DeYoung RW, Honeycutt RL (2005) The molecular toolbox: genetic techniques in wildlife ecology and management. J Wildl Manage 69: 1362-1384.
16. Edwards S (2009) Is a new and general theory of molecular systematics emergins? Evolution 63: 1-19.
17. Excoffier L, Heckel G (2006) Computer programs for population genetics data analysis: a survival guide. Nat Rev Genet 7: 745-758.
18. Facon B, Pointier JP, Jarne P, Sarda V, David P (2008) High genetic variance in life-history strategies within invasive populations by way of multiple introductions. Curr Biol 18: 363-367.
19. Fagan W, Lewis M, Neubert M, van den Driessche P (2002) Invasion theory and biological control. Ecol Lett 5: 148-157.
20. Fenton B, Malloch G, Jones AT, Amrine JW Jr, Gordon SC, A′Hara S, McGavin WJ, Birch ANE (1995) Species identification of Cecidophyopsis mites (Acari: Eriophyidae) from different Ribes species and countries using molecular genetics. Mol Ecol 4: 383-387.
21. Fenton B, Jones AT, Malloch G, Thomas WP (1996) Molecular ecology of some Cecidophyopsis mites (Acari: Eriophyidae) on Ribes species and evidence for their natural cross colonisation of blackcurrant (R. nigrum). Ann Appl Biol 128: 405-414.
22. Fenton B, Malloch G, Moxey E (1997) Analysis of eriophyid rDNA internal transcribed spacer sequences reveals variable simple sequence repeats. Insect Mol Biol 6: 23-32.
23. Fenton B, Birch ANE, Malloch G, Lanham PG, Brennan RM (2000) Gall mite molecular phylogeny and its relationship to the evolution of plant host specificity. Exp Appl Acarol 24: 831-841.
24. Galtier N, Daubin V (2008) Dealing with incongruence in phylogenomic analyses. Philos Trans R Soc Lond B Biol Sci 363: 4023-4029.
25. Garant D, Kruuk L (2005) How to use molecular marker data to measure evolutionary parameters in wild populations. Mol Ecol 14: 1843-1859.
26. Gariepy TD, Kuhlmann U, Gillott C, Erlandson M (2007) Parasitoids, predators and PCR: the use of diagnostic molecular markers in biological control of Arthropods. J Appl Entomol 131: 225-240.
27. Ghanekar AM, Sheila VK, Benival SPS, Reddy MV, Nene YL (1992) Sterility mosaic of pigeonpea. In: Singh US, Mukhopadhyay AN, Kumar J, Chaube HS (eds) Plant diseases of international importance, vol 1. Prentice Hall, New Jersey, pp 415-428.
28. Goldstein DB, Schlötterer C (1999) Microsatellites, evolution and applications. Oxford University Press, New York, p 352.
29. Goolsby JA, De Barro PJ, Makinson JR, Pemberton RW, Hartley DM, Frohlich DR (2006) Matching the origin of an invasive weed for selection of a herbivore haplotype for biological control programme. Mol Ecol 15: 287-297.
30. Grbic M, Khila A, Lee K-Z, Bjelica A, Grbic V, Whistlecraft J, Verdon L, Navajas M, Nagy L (2007) Mite model: Tetranychus urticae, a candidate for chelicerate model organism. Bioessays 29: 489-496.
31. Grimmelikhuijzen CJP, Cazzamali G, Williamson M, Hauser F (2007) The promise of insect genomics. Pest Manag Sci 63: 413-416.
32. Heckel DG (2003) Genomics in pure and applied Entomology. Ann Rev Entomol 48: 235-260.
33. Helle W, Wysoki M (1996) Arhenotokous parthenogenesis. In: Lindquist EE, Sabelis MW, Bruin J (eds) Eriophyoid mites: their biology, natural enemies and control. Elsevier, Amsterdam, pp 169-171.
34. Hill CA, Wikel SK (2005) The Ixodes scapularis Genome Project: an opportunity for advancing tick research. Trends Parasitol 21: 151-153.
35. Hinomoto N, Tran DP, Pham AT, Le TBN, Tajima R, Ohashi K, Osakabe M, Takafuji A (2007) Identification of spider mites (Acari: Tetranychidae) by DNA sequences: a case study in Northern Vietnam. Int J Acarol 33: 53-60.
36. Hong XY, Wang DS, Zhang ZQ (2006) Distribution and damage of recent invasive eriophyoid mites (Acari: Eriophyoidea) in mainland China. Int J Acarol 32: 227-240.
37. Konakandla B, Park Y, Margolies D (2006) Whole genome amplification of Chelex-extracted DNA from a single mite: a method for studying genetics of the predatory mite Phytoseiulus persimilis. Exp Appl Acarol 40: 241-247.
38. Kumar L, Fenton B, Jones AT (1999) Identification of Cecidophyopsis mites (Acari: Eriophyidae) based on variable simple sequence repeats of ribosomal DNA internal transcribed spacer-1 sequences via multiplex PCR. Insect Mol Biol 8: 347-357.
39. Kumar PL, Fenton B, Duncan GH, Jones AT, Sreenivasulu P, Reddy DVR (2001) Assessment of variation in Aceria cajani using analysis of rDNA ITS regions and scanning electron microscopy: implications for the variability observed in host plant resistance to pigeonpea sterility mosaic disease. Ann Appl Biol 139: 61-73.
40. Lekveishvili M, Amrine JW Jr, Wells J (2008) Preliminary results of eriophyoid phylogeny (Acari: Prostigmata). In Sixth European Congress of Acarology. European Association of Acarologists, Montpellier, 49.
41. Lemmetty A, Tikkanen M, Tuovinen T, Lehto K (2001) Identification of different Cecidophyopsis mites on Ribes in Finland. Acta Hortic 656: 115-118.
42. Lindquist EE, Amrine JWJ (1996) Systematics, diagnoses for major taxa, and keys to families and genera with species on plants of economic importance. In: Lindquist EE, Sabelis MW, Bruin J (eds) Eriophyoid mites: their biology, natural enemies and control. Elsevier, Amsterdam, pp 33-88.
43. Manson DCM, Oldfield GN (1996) Life forms, deuterogyny, diapause and seasonal development. In: Lindquist EE, Sabelis MW, Bruin J (eds) Eriophyoid mites: their biology, natural enemies and control. Elsevier, Amsterdam, pp 173-183.
44. Marrelli MT, Sallum MAM, Marinotti O (2006) The second internal transcribed spacer of nuclear ribosomal DNA as a tool for Latin American anopheline taxonomy-a critical review. Mem Inst Oswaldo Cruz 101: 817-832.
45. Mullis KB, Faloona FA (1987) Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Meth Enzymol 155: 335-350.
46. Navajas M, Boursot P (2003) Nuclear ribosomal DNA monophyly versus mitochondrial DNA polyphyly in two closely related mite species: the influence of life history and molecular drive. Proceedings of the Royal Society of London B (Suppl) 270: S124-S127.
47. Navajas M, Fenton B (2000) The application of molecular markers in the study of diversity in acarology: a review. Exp Appl Acarol 24: 751-774.
48. Navajas M, Gutierrez J, Williams M, Gotoh T (2001) Synonymy between two spider mite species, Tetranychus kanzawai and T. hydrangeae (Acari: Tetranychidae), shown by ribosomal ITS2 sequences and cross-breeding experiments. Bull Entomol Res 91: 7.
49. Navia D, GJd Moraes, Roderick G, Navajas M (2005) The invasive coconut mite Aceria guerreronis (Acari: Eriophyidae): origin and invasion sources inferred from mitochondrial (16S) and nuclear (ITS) sequences. Bull Entomol Res 95: 505-516.
50. Nichols R (2001) Gene trees and species trees are not the same. Trends Ecol Evol 16: 358-364.
51. Oldfield GN, Proeseler G (1996) Eriophyoid mites as vectors of plant pathogens. In: Lindquist EE, Sabelis MW, Bruin J (eds) Eriophyoid mites-their biology, natural enemies and control. Elsevier, Amsterdam, pp 259-275.
52. Rodrigo A, Bertels F, Heled J, Noder R, Shearman H, Tsai P (2008) The perils of plenty: what are we going to do with all these genes? Philos Trans R Soc Lond B Biol Sci 363: 3893-3902.
53. Rodrigues JCVR, Childers CC, Gallo-Meagher M, Ochoa R, Adams BJ (2004) Mitochondrial DNA and RAPD polymorphisms in the haploid mite Brevipalpus phoenicis (Acari: Tenuipalpidae). Exp Appl Acarol 34: 17.
54. Rowley DL, Coddington JA, Gates MW, Norrbom AL, Ochoa RA, Vandenberg NJ, Greenstone MH (2007) Vouchering DNA-barcoded specimens: test of a nondestructive extraction protocol for terrestrial arthropods. Mol Ecol Notes 7: 915-924.
55. Ruedas LA, Salazar-Bravo J, Dragoo JW, Yates TL (2000) The importance of being earnest: what, if anything, constitutes a "specimen examined?". Mol Phylogenet Evol 17: 129-132.
56. Savolainen V, Cowan RS, Vogler AP, Roderick GK, Lane R (2005) Towards writing the encyclopaedia of life: an introduction to DNA barcoding. Philos Trans R Soc Lond B Biol Sci 360: 1805-1811.
57. Shendure J, Ji HL (2008) Next-generation DNA sequencing. Nat Biotechnol 26: 1135-1145.
58. Simon C, Frati F, Beckenbach A, Crespi B, Liu H, Flook P (1994) Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann Entomol Soc Am 87: 651-701.
59. Skoracka A, Dabert M (in press) The cereal rust mite Abacarus hystrix (Acari Eriophyoide) is a complex of species: evidences from mitochondrial and nuclear DNA sequences. Bull Entomol Res. doi: 10. 1017/S0007485309990216.
60. Sonnenberg R, Nolte AW, Tautz D (2007) An evaluation of LSU rDNA D1-D2 sequences for their use in species identification. Front Zool 4: 12.
61. Sperling F, Anderson G, Hickey D (1994) A DNA-based approach to the identification of insect species used for postmortem interval estimation. J Forensic Sci 39: 418-427.
62. Sunnucks P (2000) Efficient genetic markers for population biology. Trends Ecol Evol 15: 199-203.
63. Tautz D, Arctander P, Minelli A, Thomas RH, Vogler AP (2003) A plea for DNA taxonomy. Trends Ecol Evol 18: 70-74.
64. Vilgalys R (2003) Taxonomic misidentification in public DNA databases. New Phytol 160: 3-4.