Mitochondrial processing peptidase activity is controlled by the processing of α-MPP during development in Dictyostelium discoideum

Microbiology

Volumn 156, Issue 4, 2010, Pages 978-989

  Nagayama, Koki ^a,b,c   Ohmachi, Tetsuo ^b  

^a IWATE UNIVERSITY   (Japan)

^b HIROSAKI UNIVERSITY   (Japan)

^c UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MITOCHONDRIAL ENZYME; MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA; MITOCHONDRIAL PROTEIN; PEPTIDASE; UNCLASSIFIED DRUG;

ALPHA CHAIN; ARTICLE; CELL GROWTH; CONTROLLED STUDY; DEVELOPMENTAL STAGE; DICTYOSTELIUM DISCOIDEUM; DOWN REGULATION; ENZYME ACTIVITY; LIFE CYCLE; MITOCHONDRION; MUTANT; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; WILD TYPE;

AMINO ACID SEQUENCE; DICTYOSTELIUM; METALLOENDOPEPTIDASES; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTOZOAN PROTEINS;

DICTYOSTELIUM; DICTYOSTELIUM DISCOIDEUM;

EID: 77950688753     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.034306-0     Document Type: Article

References (45)

1. Alton, T. H. & Lodish, H. F. (1977). Developmental changes in messenger RNAs and protein synthesis in Dictyostelium discoideum. Dev Biol 60, 180-206.
2. Ashworth, J. M., Duncan, D. & Rowe, A. J. (1969). Changes in fine structure during cell differentiation of the cellular slime mould Dictyostelium discoideum. Exp Cell Res 58, 73-78.
3. Birney, M. A. & Klein, C. (1995). Cloning and expression of the a subunit of succinyl-CoA synthetase from Dictyostelium discoideum. Arch Biochem Biophys 319, 93-101.
4. Bof, M., Brandolin, G., Satre, M. & Klein, G. (1999). The mitochondrial adenine nucleotide translocator from Dictyostelium discoideum: functional characterization and DNA sequencing. Eur J Biochem 259, 795-800. (Pubitemid 29075508)
5. Bokko, P. B., Francione, L., Bandala-Sanchez, E., Ahmed, A. U., Annesley, S. J., Huang, X., Khurana, T., Kimmel, A. R. & Fisher, P. R. (2007). Diverse cytopathologies in mitochondrial disease are caused by AMP-activated protein kinase signaling. Mol Biol Cell 18, 1874-1886. (Pubitemid 46717567)
6. Branda, S. S. & Isaya, G. (1995). Prediction and identification of new natural substrates of the yeast mitochondrial intermediate peptidase. J Biol Chem 270, 27366-27373.
7. Chida, J., Yamaguchi, H., Amagai, A. & Maeda, Y. (2004). The necessity of mitochondrial genome DNA for normal development of Dictyostelium cells. J Cell Sci 117, 3141-3152. (Pubitemid 39139901)
8. Chida, J., Amagai, A., Tanaka, M. & Maeda, Y. (2008). Establishment of a new method for precisely determining the functions of individual mitochondrial genes, using Dictyostelium cells. BMC Genet 9, 25. (Pubitemid 351597442)
9. Cotter, D. A., Miura-Santo, L. Y. & Hohl, H. R. (1969). Ultrastructural changes during germination of Dictyostelium discoideum spores. J Bacteriol 100, 1020-1026.
10. Early, A., McRobbie, S. J., Duffy, K. T., Jermyn, K. A., Tilly, R., Ceccarelli, A. & Williams, J. G. (1988). Structural and functional characterization of genes encoding Dictyostelium prestalk and prespore cell-specific proteins. Dev Genet 9, 383-402. (Pubitemid 19001357)
11. Eichinger, L., Pachebat, J. A., Glockner, G., Rajandream, M. A., Sucgang, R., Berriman, M., Song, J., Olsen, R., Szafranski, K. & other authors (2005). The genome of the social amoeba Dictyostelium discoideum. Nature 435, 43-57.
12. Fisher, P. R. & Annesley, S. J. (2006). Slug phototaxis, thermotaxis, and spontaneous turning behavior. Methods Mol Biol 346, 137-170.
13. Foury, F., Roganti, T., Lecrenier, N. & Purnelle, B. (1998). The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae. FEBS Lett 440, 325-331.
14. Gakh, O., Cavadini, P. & lsaya, G. (2002). Mitochondrial processing peptidases. Biochim Biophys Acta 1592, 63-77.
15. Gavel,Y.&vonHeijne,G.(1990).Cleavage- sitemotifsinmitochondrialtargetingpeptides.ProteinEng4,33-37.(Pubitemid20347915)
16. George, R. P., Hohl, H. R. & Raper, K. B. (1972). Ultrastructural development of stalk-producing cells in Dictyostelium discoideum, a cellular slime mould. J Gen Microbiol 70, 477-489.
17. Hendrick, J. P., Hodge, P. E. & Rosenberg, L. E. (1989). Survey of amino-terminal proteolytic cleavage sites in mitochondrial precursor proteins: leader peptides cleaved by two matrix proteases share a three-amino acid motif. Proc Natl Acad Sci U S A 86, 4056-4060.
18. Howard, P. K., Aher, K. G. & Firtel, R. A. (1988). Establishment of a transient expression system for Dictyostelium discoideum. Nucleic Acids Res 16, 2613-2623.
19. Inazu, Y., Chae, S. C. & Maeda, Y. (1999). Transient expression of a mitochondrial gene cluster including rps4 is essential for the phaseshift of Dictyostelium cells from growth to differentiation. Dev Genet 25, 339-352.
20. Ito, A. (1999). Mitochondrial processing peptidase: multiple-site recognition of precursor proteins. Biochem Biophys Res Commun 265, 611-616.
21. Kitada, S., Shimokata, K., Niidome, T., Ogishima, T. & Ito, A. (1995). A putative metal-binding site in the β-subunit of rat mitochondrial processing peptidase is essential for its catalytic activity. J Biochem 117, 1148-1150.
22. Kitada, S., Kojima, K., Shimokata, K., Ogishima, T. & Ito, A. (1998). Glutamate residues required for substrate binding and cleavage activity in mitochondrial processing. J Biol Chem 273, 32547-32553. (Pubitemid 28557632)
23. Koehler, C. M. (2004). New developments in mitochondrial assembly. Annu Rev Cell Dev Biol 20, 309-335.
24. Kojima, K., Kitada, S., Shimokata, K., Ogishima, T. & Ito, A. (1998). Cooperative formation of a substrate binding pocket by α- and βsubunits of mitochondrial processing peptidase. J Biol Chem 273, 32542-32546. (Pubitemid 28557631)
25. Komori, K., Kuroe, K., Yanagisawa, K. & Tanaka, Y. (1997). Cloning and characterization of the gene encoding a mitochondrially localized DNA topoisomerase II in Dictyostelium discoideum. Biochim Biophys Acta 1352, 63-72.
26. Kotslfas, M., Barth, C., Lozanne, A. D., Lay, S. T. & Fisher, P. R. (2002). Chaperonin 60 and mitochondrial disease in Dictyostelium. J Muscle Res Cell Motil 23, 839-852.
27. Lill, R. & Kispal, G. (2000). Maturation of cellular Fe-S proteins: an essential function of mitochondria. Trends Biochem Sci 25, 352-356. (Pubitemid 30497238)
28. Lowry, O. H., Rosebrough, N. J., Farr, A. L. & Randall, R. J. (1951). Protein measurement with the folin phenol reagent. J Biol Chem 193, 265-275.
29. Luciano, P., Geoffroy, S., Brandel, A., Hermandez, J.-F. & Geli, V. (1997). Functional cooperation of the mitochondrial processing peptidase subunits. J Mol Biol 272, 213-225. (Pubitemid 27397346)
30. Luciano, P., Tokatlidis, K., Chambre, I., Germanique, J.-C. & Geli, V. (1998). The mitochondrial processing peptidase behaves as a zincmetallopeptidase. J Mol Biol 280, 193-199. (Pubitemid 28325512)
31. Maarse, A. C., Van Loon, A. P., Riezman, H., Gregor, I., Schatz, G. & Grivell, L. A. (1984). Subunit IV of yeast cytochrome c oxidase: cloning and nucleotide sequencing of the gene and partial amino acid sequencing of the mature protein. EMBO J 3, 2831-2837.
32. Maeda, Y. (1971). Formation of a prespore specific structure from a mitochondrion during development of the cellular slime mold, Dictyostelium discoideum. Dev Growth Differ 13, 211-219.
33. Margolskee, J. P. & Lodish, H. F. (1980). The regulation of the synthesis of actin and two other proteins induced early in Dictyostelium discoideum development. Dev Biol 74, 50-64.
34. Morita, T., Amagai, A. & Maeda, Y. (2005). Involvement of the TRAP-1 homologue, Dd-TRAP1, in spore differentiation during Dictyostelium development. Exp Cell Res 303, 425-431. (Pubitemid 40126274)
35. Nagao, Y., Kitada, S., Kojima, K., Toh, H., Kuhara, S., Ogishima, T. & Ito, A. (2000). Glycine-rich region of mitochondrial processing peptidase α-subunit is essential for binding and cleavage of the precursor proteins. J Biol Chem 275, 34552-34556.
36. Nagayama, K., Itono, S., Yoshida, T., Ishiguro, S., Ochiai, H. & Ohmachi, T. (2008). Antisense RNA inhibition of the β subunit of the Dictyostelium discoideum mitochondrial processing peptidase induces the expression of mitochondrial proteins. Biosci Biotechnol Biochem 72, 1836-1846.
37. Newell, P. C., Telser, A. & Sussman, M. (1969). Alternative developmental pathways determined by environmental conditions in the cellular slime mold Dictyostelium discoideum. J Bacteriol 100, 763-768.
38. Newmeyer, D. D. & Ferguson-Miller, S. (2003). Mitochondria: releasing power for life and unleashing the machineries of death. Cell 112, 481-490.
39. Scarpulla, R. C. (2006). Nuclear control of respiratory gene expression in mammalian cells. J Cell Biochem 97, 673-683.
40. Shimokata, K., Kitada, S., Ogishima, T. & Ito, A. (1998). Role of α-subunit of mitochondrial processing peptidase in subunit recognition. J Biol Chem 273, 25158-25163. (Pubitemid 28443275)
41. Sussman, R. & Sussman, M. (1967). Cultivation of Dictyostelium discoideum in axenic medium. Biochem Biophys Res Commun 29, 53-55.
42. van Es, S., Wessels, D., Soli, D. R., Borleis, J. & Devreotes, P. N. (2001). Tortoise, a novel mitochondrial protein, is required for directional responses of Dictyostelium in chemotactic gradients. J Cell Biol 152, 621-632. (Pubitemid 34280243)
43. von Heijne, G. (1990). The signal peptide. J Membr Biol 115, 195-201.
44. von Heijne, G., Steppuhn, J. & Herrmann, R. G. (1989). Domain structure of mitochondrial and chloroplast targeting peptides. Eur J Biochem 180, 535-545. (Pubitemid 19111117)
45. Wilczynska, Z., Barth, C. & Fisher, P. R. (1997). Mitochondrial mutations impair signal transduction in Dictyostelium discoideum slugs. Biochem Biophys Res Commun 234, 39-43. (Pubitemid 27267527)