-
1
-
-
0036656143
-
How to get from A to B: Strategies for analysing protein motion on DNA
-
Halford, S. E., and M. D. Szczelkun. 2002. How to get from A to B: strategies for analysing protein motion on DNA. Eur. Biophys. J. 31:257-267.
-
(2002)
Eur. Biophys. J.
, vol.31
, pp. 257-267
-
-
Halford, S.E.1
Szczelkun, M.D.2
-
2
-
-
3042579602
-
How do site-specific DNA-binding proteins find their targets'?
-
Halford, S. E., and J. F. Marko. 2004. How do site-specific DNA-binding proteins find their targets'? Nucleic Acids Res. 32:3040-3052.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3040-3052
-
-
Halford, S.E.1
Marko, J.F.2
-
3
-
-
33645816459
-
How proteins search for their specific sites on DNA: The role of DNA conformation
-
Hu, T., A. Y. Grosberg, and B. I. Shklovskii. 2006. How proteins search for their specific sites on DNA: the role of DNA conformation. Biophys. J. 90:2731-2744.
-
(2006)
Biophys. J.
, vol.90
, pp. 2731-2744
-
-
Hu, T.1
Grosberg, A.Y.2
Shklovskii, B.I.3
-
4
-
-
47249153641
-
Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA
-
DOI 10.1093/nar/gkn376
-
Bonnet, I., A. Biebricher, ...,P. Desbiolles. 2008. Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA. Nucleic Acids Res. 36:4118-4127. (Pubitemid 351984827)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.12
, pp. 4118-4127
-
-
Bonnet, I.1
Biebricher, A.2
Porte, P.3
Loverdo, C.4
Benichou, O.5
Voituriez, R.6
Escude, C.7
Wende, W.8
Pingoud, A.9
Desbiolles, P.10
-
5
-
-
49449107340
-
Visualizing one-dimensional diffusion of proteins along DNA
-
Gorman, J., and E. C. Greene. 2008. Visualizing one-dimensional diffusion of proteins along DNA. Nat. Struct. Mol. Biol. 15:768-774.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 768-774
-
-
Gorman, J.1
Greene, E.C.2
-
6
-
-
46349108554
-
Spatial effects on the speed and reliability of protein-DNA search
-
DOI 10.1093/nar/gkn173
-
Wunderlich, Z., and L. A. Mirny. 2008. Spatial, effects on. the speed and reliability of protein-DNA search. Nucleic Acids Res. 36:3570-3578. (Pubitemid 351917521)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.11
, pp. 3570-3578
-
-
Wunderlich, Z.1
Mirny, L.A.2
-
7
-
-
72149127671
-
How a protein searches for its site on DNA; the mechanism of facilitated diffusion. J
-
Mirny, L., M. Slutsky,..., A. Kosmrlj. 2009. How a protein searches for its site on DNA; the mechanism of facilitated diffusion. J. Phys. A Math. Theor. 42:434013.
-
(2009)
Phys. A Math. Theor.
, vol.42
, pp. 434013
-
-
Mirny, L.1
Slutsky, M.2
Kosmrlj, A.3
-
8
-
-
10044223573
-
Kinetics of protein-DNA interaction: Facilitated target location in sequence-dependent potential
-
DOI 10.1529/biophysj.104.050765
-
Slutsky, M., and L. A. Mirny. 2004. Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential. Biophys. J. 87:4021-4035. (Pubitemid 39602906)
-
(2004)
Biophysical Journal
, vol.87
, Issue.6
, pp. 4021-4035
-
-
Slutsky, M.1
Mirny, L.A.2
-
9
-
-
51049093016
-
Are DNA transcription factor proteins Maxwellian demons'?
-
Hu, L. A, Y. Grosberg, and R. Bruinsma. 2008. Are DNA transcription factor proteins Maxwellian demons'? Biophys. J. 95:115.1.-11.56.
-
(2008)
Biophys. J.
, vol.95
, pp. 1151-1156
-
-
Hu, L.A.1
Grosberg, Y.2
Bruinsma, R.3
-
10
-
-
52949100201
-
Global jumping and domainspecific intersegment transfer between DNA cognate sites of the multidomain transcription factor OcH
-
USA.
-
Doucleff, M., and G. M. Clore. 2008. Global jumping and domainspecific intersegment transfer between DNA cognate sites of the multidomain transcription factor OcH. Proc Natl, Acad. Sci. USA. 105:13871-13876.
-
(2008)
Proc Natl, Acad. Sci.
, vol.105
, pp. 13871-13876
-
-
Doucleff, M.1
Clore, G.M.2
-
11
-
-
0031830815
-
Minor groove-binding architectural proteins: Structure, function, and DNA recognition
-
Bewley, C. A., A. M. Gronenbom, and G. M. Clore. 1998. Minor groove-binding architectural proteins: structure, function, and DNA recognition. Annu. Rev. Biophys. Biomol. Struct. 27:105 131.
-
(1998)
Annu. Rev. Biophys. Biomol. Struct.
, vol.27
, pp. 105131
-
-
Bewley, C.A.1
Gronenbom, A.M.2
Clore, G.M.3
-
12
-
-
0032996355
-
DNA-protein cooperative binding through variable-range elastic coupling
-
Rudnick,J.,andR.Bruinsma.1999.DNA- proteincooperativebindingthroughvariable-rangeelasticcoupling.Biophys.J.76: 1725-1733.(Pubitemid29266332)
-
(1999)
Biophysical Journal
, vol.76
, Issue.4
, pp. 1725-1733
-
-
Rudnick, J.1
Bruinsma, R.2
-
13
-
-
0003871536
-
-
Marcel. Dekker, CRC Press, New York
-
Becker, O. M., A. D. MacKerell, Jr., B. Roux, and M. Watanabe. 2001. Computational Biochemistry and Biophysics. Marcel. Dekker, CRC Press, New York,
-
(2001)
Computational Biochemistry and Biophysics
-
-
Becker, O.M.1
MacKerell Jr., A.D.2
Roux, B.3
Watanabe, M.4
-
14
-
-
33845920116
-
Molecular dynamics simulation of hydroxyapatite-polyacrylic acid interfaces
-
DOI 10.1016/j.polymer.2006.11.015, PII S0032386106012584
-
Bhowmik, R., K. S. Katti, and D. Katti. 2007. Molecular dynamics simulation of hydroxyapatite-polyacrylic acid interfaces. Polymer (Guildf.). 48:664-674. (Pubitemid 46038336)
-
(2007)
Polymer
, vol.48
, Issue.2
, pp. 664-674
-
-
Bhowmik, R.1
Katti, K.S.2
Katti, D.3
-
15
-
-
0033917135
-
The key event in force-induced unfolding of titin's immunoglobulin domains
-
Lu,H.,K.Schulten.2000.Thekeyeventinforce- inducedunfoldingofTitin'simmunoglobulindomains.Biophys.J.79:51-65. (Pubitemid30436727)
-
(2000)
Biophysical Journal
, vol.79
, Issue.1
, pp. 51-65
-
-
Lu, H.1
Schulten, K.2
-
16
-
-
34249930159
-
Single-molecule experiments in vitro and in silico
-
Sotomayor, M., and K. Schulten, 2007. Single-molecule experiments in vitro and in silico. Science. 316:1144-1148.
-
(2007)
Science.
, vol.316
, pp. 1144-1148
-
-
Sotomayor, M.1
Schulten, K.2
-
17
-
-
0035312645
-
Steered molecular dynamics and mechanical functions of proteins
-
DOI 10.1016/S0959-440X(00)00194-9
-
Isralewitz, B., M. Gao, and K. Schulten, 2001, Steered molecular dynamics and mechanical functions of proteins. Curr. Opin. Struct. Biol. 11:224-230. (Pubitemid 32289426)
-
(2001)
Current Opinion in Structural Biology
, vol.11
, Issue.2
, pp. 224-230
-
-
Isralewitz, B.1
Gao, M.2
Schulten, K.3
-
18
-
-
33751168064
-
Biologic properties of mesenchymal stem cells derived from bone marrow and adipose tissue
-
Izadpanah, R., C. Trygg,..., B. A. Bunnell, 2006. Biologic properties of mesenchymal stem cells derived from bone marrow and adipose tissue. J. Cell. Biochem. 99:1285-1297.
-
(2006)
J. Cell. Biochem.
, vol.99
, pp. 1285-1297
-
-
Izadpanah, R.1
Trygg, C.2
Bunnell, B.A.3
-
19
-
-
0346462991
-
Molecular basis for synergistic transcriptional activation by Octl and Sox2 revealed from the solution structure of the 42-kDa Octl center dot Sox2 center dot Hoxbl-DNA ternary transcription factor complex
-
Williams, D. C, M. L. Cai, and G. M. Clore. 2004. Molecular basis for synergistic transcriptional activation by Octl and Sox2 revealed from the solution structure of the 42-kDa Octl center dot Sox2 center dot Hoxbl-DNA ternary transcription factor complex. J. Biol. Chem. 279:1449-1457.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 1449-1457
-
-
Williams, D.C.1
Cai, M.L.2
Clore, G.M.3
-
21
-
-
0034250744
-
An improved empirical potential energy function for molecular simulations of phospholipids
-
Feller, S. E., and A. D. MacKerell, 2000. An improved empirical potential energy function for molecular simulations of phospholipids. J. Phys. Chem. B. 104:7510-7515.
-
(2000)
J. Phys. Chem. B.
, vol.104
, pp. 7510-7515
-
-
Feller, S.E.1
MacKerell, A.D.2
-
22
-
-
4444351490
-
Empirical, force fields for biological, macromolecules: Overview and issues
-
Mackerell, Jr., A. D. 2004. Empirical, force fields for biological, macromolecules: overview and issues. J. Comput. Chem. 25:1584-1604.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1584-1604
-
-
Mackerell Jr., A.D.1
-
23
-
-
51049123043
-
Molecular-dynamics simulations of insertion of chemically modified DNA nanostructures into a water-chloroform interface
-
Lin, J., N. C. Seeman, and N. Vaidehi. 2008. Molecular-dynamics simulations of insertion of chemically modified DNA nanostructures into a water-chloroform interface. Biophys. J. 95:1099-1107.
-
(2008)
Biophys. J.
, vol.95
, pp. 1099-1107
-
-
Lin, J.1
Seeman, N.C.2
Vaidehi, N.3
|