Identification in Agrobacterium tumefaciens of the D-galacturonic acid dehydrogenase gene

Applied Microbiology and Biotechnology

Volumn 86, Issue 3, 2010, Pages 901-909

  Boer, Harry ^a   Maaheimo, Hannu ^a   Koivula, Anu ^a   Penttilä, Merja ^a   Richard, Peter ^a  

^a VTT TECHNICAL RESEARCH CENTRE OF FINLAND   (Finland)

Author keywords

EC 1.1.1.203; Lactone; Meso galactaric acid; Mucic acid; Oxidative pathway

Indexed keywords

AGROBACTERIUM TUMEFACIENS; CATABOLIC PATHWAY; D-GLUCURONIC ACID; GALACTURONIC ACIDS; GENE SEQUENCES; GLUTARATE; KINETIC CHARACTERIZATION; MALDI-TOF MASS SPECTROMETRY; MESO-GALACTARIC ACID; MUCIC ACIDS; NICOTINAMIDE ADENINE DINUCLEOTIDES; NMR ANALYSIS; OPEN READING FRAME; OXIDATIVE PATHWAYS; PROKARYOTIC SPECIES; PROTEIN FAMILY; ROSSMANN; SACCHAROMYCES CEREVISIAE; TAGGED PROTEINS; TRYPTIC PEPTIDES; WATER SOLUTIONS;

AMIDES; AMINO ACIDS; ELECTRIC CONDUCTIVITY MEASUREMENT; ENZYME ACTIVITY; ENZYMES; GLUCOSE; MASS SPECTROMETRY; ORGANIC ACIDS; PURIFICATION; SUBSTRATES;

GENES;

GALACTURONIC ACID; GALACTURONIC ACID DEHYDROGENASE; OXIDOREDUCTASE; UNCLASSIFIED DRUG;

AMINO ACID; BACTERIUM; BIOCHEMISTRY; BIOTECHNOLOGY; CATABOLISM; ENZYME ACTIVITY; HOMOLOGY; MASS SPECTROMETRY; PROTEIN; REACTION KINETICS;

ARTICLE; BACTERIUM IDENTIFICATION; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME KINETICS; GENE EXPRESSION; GENE IDENTIFICATION; MOLECULAR CLONING; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN PURIFICATION; RHIZOBIUM RADIOBACTER;

ALDEHYDE OXIDOREDUCTASES; BACTERIAL PROTEINS; CLONING, MOLECULAR; GENE EXPRESSION; GLUCURONIC ACID; HEXURONIC ACIDS; KINETICS; MAGNETIC RESONANCE SPECTROSCOPY; METABOLIC NETWORKS AND PATHWAYS; MODELS, BIOLOGICAL; MOLECULAR WEIGHT; NAD; RECOMBINANT FUSION PROTEINS; RHIZOBIUM RADIOBACTER; SACCHAROMYCES CEREVISIAE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SUBSTRATE SPECIFICITY; SUGAR ACIDS;

AGROBACTERIUM TUMEFACIENS; PROKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 77950629780     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-009-2333-9     Document Type: Article

References (30)

1. Ashwell G, Wahba AJ, Hickman J (1960) Uronic acid metabolism in bacteria. I. Purification and properties of uronic acid isomerase in Escherichia coli. J Biol Chem 235:1559-1565
2. Bateman DF, Kosuge T, Kilgore WW (1970) Purification and properties of uronate dehydrogenase from Pseudomonas syringae. Arch Biochem Biophys 136:97-105
3. Chang YF, Feingold DS (1969) Hexuronic acid dehydrogenase of Agrobacterium tumefaciens. J Bacteriol 99:667-673
4. Chang YF, Feingold DS (1970) D-glucaric acid and galactaric acid catabolism by Agrobacterium tumefaciens. J Bacteriol 102:85-96
5. Cynkin MA, Ashwell G (1960) Uronic acid metabolism in bacteria. IV. Purification and properties of 2-keto-3-deoxy-D-gluconokinase in Escherichia coli. J Biol Chem 235:1576-1579
6. Doran-Peterson J, Cook DM, Brandon SK (2008) Microbial conversion of sugars from plant biomass to lactic acid or ethanol. Plant J 54:582-592
7. Goodner B et al (2001) Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58. Science 294:2323-2328
8. Hickman J, Ashwell G (1960) Uronic acid metabolism in bacteria. II. Purification and properties of D-altronic acid and D-mannonic acid dehydrogenases in Escherichia coli. J Biol Chem 235:1566-1570
9. Hilditch S, Berghäll S, Kalkkinen N, Penttilä M, Richard P (2007) The missing link in the fungal D-galacturonate pathway: identification of the L-threo-3-deoxy-hexulosonate aldolase. J Biol Chem 282:26195-26201
10. Hubbard BK, Koch M, Palmer DR, Babbitt PC, Gerlt JA (1998) Evolution of enzymatic activities in the enolase superfamily: characterization of the (D)-glucarate/galactarate catabolic pathway in Escherichia coli. Biochemistry 37:14369-14375
11. Jeffcoat R (1975) Studies on the subunit structure of 4-deoxy-5- oxoglucarate hydro-lyase (decarboxylating) from Pseudomonas acidovorans. Biochem J 145:305-309
12. Kuorelahti S, Kalkkinen N, Penttilä M, Londesborough J, Richard P (2005) Identification in the mold Hypocrea jecorina of the first fungal D-galacturonic acid reductase. Biochemistry 44:11234-11240 (Pubitemid 41209059)
13. Kuorelahti S, Jouhten P, Maaheimo H, Penttilä M, Richard P (2006) Lgalactonate dehydratase is part of the fungal path for Dgalacturonic acid catabolism. Mol Microbiol 61:1060-1068 (Pubitemid 44134181)
14. Liepins J, Kuorelahti S, Penttilä M, Richard P (2006) Enzymes for the NADPH-dependent reduction of dihydroxyacetone and Dglyceraldehyde and L-glyceraldehyde in the mould Hypocrea jecorina. FEBS J 273:4229-4235 (Pubitemid 44326503)
15. Martens-Uzunova E (2008) Assessment of the pectinolytic network of Aspergillus niger by functional genomics. Insight from the transcriptome. Ph.D. thesis, University of Wageningen, Wageningen
16. Mata-Gilsinger M, Ritzenthaler P (1983) Physical mapping of the exuT and uxaC operators by use of exu plasmids and generation of deletion mutants in vitro. J Bacteriol 155:973-982 (Pubitemid 13023064)
17. Meloche HP, Wood WA (1964) Crystallization and characteristics of 2-keto-3-deoxy-6-phosphogluconic aldolase. J Biol Chem 239:3515-3518
18. Moon TS, Yoon SH, Lanza AM, Roy-Mayhew JD, Prather KL (2009) Production of glucaric acid from a synthetic pathway in recombinant Escherichia coli. Appl Environ Microbiol 75:589-595
19. Richard P, Hilditch S (2009) D-Galacturonic acid catabolism in microorganisms and its biotechnological relevance. Appl Microbiol Biotechnol 82:597-604
20. Richard P, Londesborough J, Putkonen M, Kalkkinen N, Penttilä M (2001) Cloning and expression of a fungal L-arabinitol 4- dehydrogenase gene. J Biol Chem 276:40631-40637 (Pubitemid 37376446)
21. Rosenfeld J, Capdevielle J, Guillemot JC, Ferrara P (1992) In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis. Anal Biochem 203:173-179
22. Sharma BS, Blumenthal HJ (1973) Catabolism of D-gluaric acid to alpha-ketoglutarate in Bacillus megaterium. J Bacteriol 116:1346-1354
23. Smiley JD, Ashwell G (1960) Uronic acid metabolism in bacteria. III. Purification and properties of D-altronic acid and D-mannonic acid dehydrases in Escherichia coli. J Biol Chem 235:1571-1575
24. Ueberschär KH, Blachnitzky EO, Kurz G (1974) Reaction mechanism of D-galactose dehydrogenases from Pseudomonas saccharophila and Pseudomonas fluorescens. Formation and rearrangement of aldono-1, 5-lactones. Eur J Biochem 48:389-405
25. Wagner G, Hollmann S (1976a) A new enzymatic method for the determination of free and conjugated glucuronic acid. J Clin Chem Clin Biochem 14:225-226
26. Wagner G, Hollmann S (1976b) Uronic acid dehydrogenase from Pseudomonas syringae. Purification and properties. Eur J Biochem 61:589-596
27. Watanabe S, Yamada M, Ohtsu I, Makino K (2007) alpha-ketoglutaric semialdehyde dehydrogenase isozymes involved in metabolic pathways of D-glucarate, D-galactarate, and hydroxy-L-proline. Molecular and metabolic convergent evolution. J Biol Chem 282:6685-6695 (Pubitemid 47100856)
28. Wood DW et al (2001) The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science 294:2317-2323
29. Yoon SH, Moon TS, Iranpour P, Lanza AM, Prather KJ (2008) Cloning and characterization of uronate dehydrogenases from two Pseudomonads and Agrobacterium tumefaciens str. C58. J Bacteriol 191:1565-1573
30. Zajic JE (1959) Hexuronic dehydrogenase of Agrobacterium tumefaciens. J Bacteriol. 78:734-735