메뉴 건너뛰기




Volumn 11, Issue 1, 2010, Pages

LEAPdb: A database for the late embryogenesis abundant proteins

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; DATA ANALYSIS; EMBRYO DEVELOPMENT; GENE EXPRESSION; GENETIC DATABASE; INTERNET; LATE EMBRYOGENESIS ABUNDANT PROTEINS DATABASE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENETICS; PROTEIN FUNCTION; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY; STRUCTURE ACTIVITY RELATION; ARABIDOPSIS; CHEMISTRY; GROWTH, DEVELOPMENT AND AGING; MOLECULAR GENETICS; PROTEIN DATABASE; SEQUENCE ALIGNMENT;

EID: 77950527199     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-221     Document Type: Article
Times cited : (85)

References (38)
  • 1
    • 0019874708 scopus 로고
    • Developmental biochemistry of cottonseed embryogenesis and germination: changing messenger ribonucleic acid populations as shown by in vitro and in vivo protein synthesis
    • 10.1021/bi00517a033, 7284317
    • Dure L, Greenway SC, Galau GA. Developmental biochemistry of cottonseed embryogenesis and germination: changing messenger ribonucleic acid populations as shown by in vitro and in vivo protein synthesis. Biochemistry 1981, 20:4162-4168. 10.1021/bi00517a033, 7284317.
    • (1981) Biochemistry , vol.20 , pp. 4162-4168
    • Dure, L.1    Greenway, S.C.2    Galau, G.A.3
  • 2
    • 0019874701 scopus 로고
    • Developmental biochemistry of cottonseed embryogenesis and germination: changing messenger ribonucleic acid populations as shown by reciprocal heterologous complementary deoxyribonucleic acid-messenger ribonucleic acid hybridization
    • 10.1021/bi00517a034, 7284318
    • Galau GA, Dure L. Developmental biochemistry of cottonseed embryogenesis and germination: changing messenger ribonucleic acid populations as shown by reciprocal heterologous complementary deoxyribonucleic acid-messenger ribonucleic acid hybridization. Biochemistry 1981, 20:4169-4178. 10.1021/bi00517a034, 7284318.
    • (1981) Biochemistry , vol.20 , pp. 4169-4178
    • Galau, G.A.1    Dure, L.2
  • 3
    • 0000243386 scopus 로고
    • Abscisic acid induction of cloned cotton late embryogenesis-abundant (Lea) mRNAs
    • Galau GA, Hugues DW, Dure III L. Abscisic acid induction of cloned cotton late embryogenesis-abundant (Lea) mRNAs. Plant Mol Biol 1986, 7:155-170.
    • (1986) Plant Mol Biol , vol.7 , pp. 155-170
    • Galau, G.A.1    Hugues, D.W.2    Dure III, L.3
  • 5
    • 0027539156 scopus 로고
    • Cotton Lea5 and LEA4 encode atypical late embryogenesis-abundant proteins
    • 10.1104/pp.101.2.695, 160623, 8278514
    • Galau GA, Wang HY-C, Hugues DW. Cotton Lea5 and LEA4 encode atypical late embryogenesis-abundant proteins. Plant Physiol 1993, 101:695-696. 10.1104/pp.101.2.695, 160623, 8278514.
    • (1993) Plant Physiol , vol.101 , pp. 695-696
    • Galau, G.A.1    Wang, H.Y.-C.2    Hugues, D.W.3
  • 6
    • 0027140360 scopus 로고
    • Molecular responses to water deficit
    • 159086, 12231998
    • Bray EA. Molecular responses to water deficit. Plant Physiol 1993, 103:1035-1040. 159086, 12231998.
    • (1993) Plant Physiol , vol.103 , pp. 1035-1040
    • Bray, E.A.1
  • 7
    • 0031007034 scopus 로고    scopus 로고
    • Dehydrins: a commonalty in the response of plants to dehydration and low temperature
    • Close TJ. Dehydrins: a commonalty in the response of plants to dehydration and low temperature. Physiol Plant 1997, 100:291-296.
    • (1997) Physiol Plant , vol.100 , pp. 291-296
    • Close, T.J.1
  • 8
    • 33745476713 scopus 로고    scopus 로고
    • Comparative analysis of the heat stable proteome of radicles of Medicago truncatula seeds during germination identifies late embryogenesis abundant proteins associated with desiccation tolerance
    • 10.1104/pp.105.074039, 1435805, 16461389
    • Boudet J, Buitink J, Hoekstra FA, Rogniaux H, Larré C, Satour P, Leprince O. Comparative analysis of the heat stable proteome of radicles of Medicago truncatula seeds during germination identifies late embryogenesis abundant proteins associated with desiccation tolerance. Plant Physiol 2006, 140:1418-1436. 10.1104/pp.105.074039, 1435805, 16461389.
    • (2006) Plant Physiol , vol.140 , pp. 1418-1436
    • Boudet, J.1    Buitink, J.2    Hoekstra, F.A.3    Rogniaux, H.4    Larré, C.5    Satour, P.6    Leprince, O.7
  • 9
    • 0037034885 scopus 로고    scopus 로고
    • Anhydrobiosis: plant desiccation gene found in a nematode
    • 10.1038/416038a, 11882885
    • Browne J, Tunnacliffe A, Burnell A. Anhydrobiosis: plant desiccation gene found in a nematode. Nature 2002, 416:38. 10.1038/416038a, 11882885.
    • (2002) Nature , vol.416 , pp. 38
    • Browne, J.1    Tunnacliffe, A.2    Burnell, A.3
  • 10
    • 67049098975 scopus 로고    scopus 로고
    • Desiccation induced structural alterations in a 66-amino acid fragment of an anhydrobiotic nematode late embryogenesis abundant (LEA) protein
    • 10.1021/bm9002688, 19408952
    • Li D, He X. Desiccation induced structural alterations in a 66-amino acid fragment of an anhydrobiotic nematode late embryogenesis abundant (LEA) protein. Biomacromolecules 2009, 10:1469-1477. 10.1021/bm9002688, 19408952.
    • (2009) Biomacromolecules , vol.10 , pp. 1469-1477
    • Li, D.1    He, X.2
  • 11
    • 66449100600 scopus 로고    scopus 로고
    • Characterization of a group 1 late embryogenesis abundant protein in encysted embryos of the brine shrimp Artemia franciscana
    • 10.1139/O09-001, 19370059
    • Sharon MA, Kozarova A, Clegg JS, Vacratsis PO, Warner AH. Characterization of a group 1 late embryogenesis abundant protein in encysted embryos of the brine shrimp Artemia franciscana. Biochem Cell Biol 2009, 87:415-430. 10.1139/O09-001, 19370059.
    • (2009) Biochem Cell Biol , vol.87 , pp. 415-430
    • Sharon, M.A.1    Kozarova, A.2    Clegg, J.S.3    Vacratsis, P.O.4    Warner, A.H.5
  • 12
    • 0003006737 scopus 로고    scopus 로고
    • LEAP
    • Kluwer, Dordrecht, The Netherlands, Shewry PR, Casey R
    • Cuming AC. LEAP. Seed proteins 1999, 753-780. Kluwer, Dordrecht, The Netherlands, Shewry PR, Casey R.
    • (1999) Seed proteins , pp. 753-780
    • Cuming, A.C.1
  • 13
    • 2942549269 scopus 로고    scopus 로고
    • LEAping to conclusions: a computational reanalysis of late embryogenesis abundant proteins and their possible roles
    • 10.1186/1471-2105-4-52, 280651, 14583099
    • Wise MJ. LEAping to conclusions: a computational reanalysis of late embryogenesis abundant proteins and their possible roles. BMC Bioinformatics 2003, 4:52. 10.1186/1471-2105-4-52, 280651, 14583099.
    • (2003) BMC Bioinformatics , vol.4 , pp. 52
    • Wise, M.J.1
  • 14
    • 34548460796 scopus 로고    scopus 로고
    • The continuing conundrum of the LEAP
    • 10.1007/s00114-007-0254-y, 17479232
    • Tunnacliffe A, Wise MJ. The continuing conundrum of the LEAP. Naturwissenschaften 2007, 94:791-812. 10.1007/s00114-007-0254-y, 17479232.
    • (2007) Naturwissenschaften , vol.94 , pp. 791-812
    • Tunnacliffe, A.1    Wise, M.J.2
  • 15
    • 33847140438 scopus 로고    scopus 로고
    • Plant dehydrins--tissue location, structure and function
    • 10.2478/s11658-006-0044-0, 16983453
    • Rorat T. Plant dehydrins--tissue location, structure and function. Cell Mol Biol Lett 2006, 11:536-556. 10.2478/s11658-006-0044-0, 16983453.
    • (2006) Cell Mol Biol Lett , vol.11 , pp. 536-556
    • Rorat, T.1
  • 17
    • 61749093340 scopus 로고    scopus 로고
    • When cells lose water: Lessons from biophysics and molecular biology
    • 10.1016/j.pbiomolbio.2008.10.001, 18977383
    • Caramelo JJ, Iusem ND. When cells lose water: Lessons from biophysics and molecular biology. Prog Biophys Mol Biol 2009, 99:1-6. 10.1016/j.pbiomolbio.2008.10.001, 18977383.
    • (2009) Prog Biophys Mol Biol , vol.99 , pp. 1-6
    • Caramelo, J.J.1    Iusem, N.D.2
  • 19
    • 50949128448 scopus 로고    scopus 로고
    • Disordered plant LEAP as molecular chaperones
    • 2634567, 19704836
    • Kovacs D, Agoston B, Tompa P. Disordered plant LEAP as molecular chaperones. Plant Signal Behav 2008, 3:710-713. 2634567, 19704836.
    • (2008) Plant Signal Behav , vol.3 , pp. 710-713
    • Kovacs, D.1    Agoston, B.2    Tompa, P.3
  • 20
    • 67650175436 scopus 로고    scopus 로고
    • The K-segment of maize DHN1 mediates binding to anionic phospholipid vesicles and concomitant structural changes
    • 10.1104/pp.109.136697, 2705017, 19439573
    • Koag M-C, Wilkens S, Fenton RD, Resnik J, Vo E, Close TJ. The K-segment of maize DHN1 mediates binding to anionic phospholipid vesicles and concomitant structural changes. Plant Physiol 2009, 150:1503-1514. 10.1104/pp.109.136697, 2705017, 19439573.
    • (2009) Plant Physiol , vol.150 , pp. 1503-1514
    • Koag, M.-C.1    Wilkens, S.2    Fenton, R.D.3    Resnik, J.4    Vo, E.5    Close, T.J.6
  • 21
    • 34249750031 scopus 로고    scopus 로고
    • Prediction of functions for two LEAP from mung bean
    • 1891666, 17597874
    • Rajesh S, Manickam A. Prediction of functions for two LEAP from mung bean. Bioinformation 2006, 1:133-138. 1891666, 17597874.
    • (2006) Bioinformation , vol.1 , pp. 133-138
    • Rajesh, S.1    Manickam, A.2
  • 22
    • 33747625855 scopus 로고    scopus 로고
    • A dehydration-inducible gene in the truffle Tuber borchii identifies a novel group of dehydrins
    • 10.1186/1471-2164-7-39, 1550403, 16512918
    • Abba' S, Ghignone S, Bonfante P. A dehydration-inducible gene in the truffle Tuber borchii identifies a novel group of dehydrins. BMC Genomics 2006, 7:39. 10.1186/1471-2164-7-39, 1550403, 16512918.
    • (2006) BMC Genomics , vol.7 , pp. 39
    • Abba', S.1    Ghignone, S.2    Bonfante, P.3
  • 24
    • 42149111687 scopus 로고    scopus 로고
    • Inventory, evolution and expression profiling diversity of the LEA (late embryogenesis abundant) protein gene family in Arabidopsis thaliana
    • 10.1007/s11103-008-9304-x, 18265943
    • Bies-Ethève N, Gaubier-Comella P, Debures A, Lasserre E, Jobet E, Raynal M, Cooke R, Delseny M. Inventory, evolution and expression profiling diversity of the LEA (late embryogenesis abundant) protein gene family in Arabidopsis thaliana. Plant Mol Biol 2008, 67:107-124. 10.1007/s11103-008-9304-x, 18265943.
    • (2008) Plant Mol Biol , vol.67 , pp. 107-124
    • Bies-Ethève, N.1    Gaubier-Comella, P.2    Debures, A.3    Lasserre, E.4    Jobet, E.5    Raynal, M.6    Cooke, R.7    Delseny, M.8
  • 25
    • 42149115630 scopus 로고    scopus 로고
    • LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana
    • 10.1186/1471-2164-9-118, 2292704, 18318901
    • Hundertmark M, Hincha DK. LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana. BMC Genomics 2008, 9:118. 10.1186/1471-2164-9-118, 2292704, 18318901.
    • (2008) BMC Genomics , vol.9 , pp. 118
    • Hundertmark, M.1    Hincha, D.K.2
  • 29
    • 24044515001 scopus 로고    scopus 로고
    • FoldIndex©: a simple tool to predict whether a given protein sequence is intrinsically unfolded
    • 10.1093/bioinformatics/bti537, 15955783
    • Prilusky J, Felder CE, Zeev-Ben-Mordehai T, Rydberg E, Man O, Beckmann JS, Silman I, Sussman JL. FoldIndex©: a simple tool to predict whether a given protein sequence is intrinsically unfolded. Bioinformatics 2005, 21:3435-3438. 10.1093/bioinformatics/bti537, 15955783.
    • (2005) Bioinformatics , vol.21 , pp. 3435-3438
    • Prilusky, J.1    Felder, C.E.2    Zeev-Ben-Mordehai, T.3    Rydberg, E.4    Man, O.5    Beckmann, J.S.6    Silman, I.7    Sussman, J.L.8
  • 30
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • 10.1016/0022-2836(82)90515-0, 7108955
    • Kyte J, Doolittle RF. A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982, 157:105-132. 10.1016/0022-2836(82)90515-0, 7108955.
    • (1982) J Mol Biol , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 32
    • 59649091388 scopus 로고    scopus 로고
    • Bioinformatics and protein expression analyses implicate LEAP in the drought response of Collembola
    • 10.1016/j.jinsphys.2008.11.010, 19100270
    • Bahrndorff S, Tunnacliffe A, Wise MJ, McGee B, Holmstrup M, Loeschcke V. Bioinformatics and protein expression analyses implicate LEAP in the drought response of Collembola. J Insect Physiol 2009, 55:210-217. 10.1016/j.jinsphys.2008.11.010, 19100270.
    • (2009) J Insect Physiol , vol.55 , pp. 210-217
    • Bahrndorff, S.1    Tunnacliffe, A.2    Wise, M.J.3    McGee, B.4    Holmstrup, M.5    Loeschcke, V.6
  • 33
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • 10.1093/nar/16.22.10881, 338945, 2849754
    • Corpet F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res 1988, 16:10881-10890. 10.1093/nar/16.22.10881, 338945, 2849754.
    • (1988) Nucleic Acids Res , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 36
    • 14844337509 scopus 로고    scopus 로고
    • Auto-induction medium for the production of [U-15N]- and [U-13C, U-15N]-labeled proteins for NMR screening and structure determination
    • 10.1016/j.pep.2004.12.024, 15766868
    • Tyler RC, Sreenath HK, Singh S, Aceti DJ, Bingman CA, Markley JL, Fox BG. Auto-induction medium for the production of [U-15N]- and [U-13C, U-15N]-labeled proteins for NMR screening and structure determination. Protein Expr Purif 2005, 40:268-278. 10.1016/j.pep.2004.12.024, 15766868.
    • (2005) Protein Expr Purif , vol.40 , pp. 268-278
    • Tyler, R.C.1    Sreenath, H.K.2    Singh, S.3    Aceti, D.J.4    Bingman, C.A.5    Markley, J.L.6    Fox, B.G.7
  • 37
    • 25844515725 scopus 로고    scopus 로고
    • Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein
    • 10.1110/ps.051579205, 2253292, 16155204
    • Singh S, Cornilescu CC, Tyler RC, Cornilescu G, Tonelli M, Lee MS, Markley JL. Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein. Protein Sci 2005, 14:2601-2609. 10.1110/ps.051579205, 2253292, 16155204.
    • (2005) Protein Sci , vol.14 , pp. 2601-2609
    • Singh, S.1    Cornilescu, C.C.2    Tyler, R.C.3    Cornilescu, G.4    Tonelli, M.5    Lee, M.S.6    Markley, J.L.7
  • 38
    • 17444430874 scopus 로고    scopus 로고
    • The WHy domain mediates the response to desiccation in plants and bacteria
    • 10.1093/bioinformatics/bti221, 15598830
    • Ciccarelli FD, Bork P. The WHy domain mediates the response to desiccation in plants and bacteria. Bioinformatics 2005, 21:1304-1307. 10.1093/bioinformatics/bti221, 15598830.
    • (2005) Bioinformatics , vol.21 , pp. 1304-1307
    • Ciccarelli, F.D.1    Bork, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.