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Volumn 48, Issue 4, 2010, Pages 1283-1290

Identification of Clinically Important Anaerobic Bacteria by an Oligonucleotide Array

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; RNA 23S;

EID: 77950474179     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01620-09     Document Type: Article
Times cited : (14)

References (43)
  • 1
    • 0035080986 scopus 로고    scopus 로고
    • Multicenter survey of the changing in vitro antimicrobial susceptibilities of clinical isolates of Bacteroides fragilis group, Prevotella, Fusobacterium, Porphyromonas, and
    • Aldridge, K. E., D. Ashcraft, K. Cambre, C. L. Pierson, S. G. Jenkins, and J. E. Rosenblatt. 2001. Multicenter survey of the changing in vitro antimicrobial susceptibilities of clinical isolates of Bacteroides fragilis group, Prevotella, Fusobacterium, Porphyromonas, and Peptostreptococcus species. Antimicrob. Agents Chemother. 45:1238-1243.
    • (2001) Peptostreptococcus Species. Antimicrob. Agents Chemother. , vol.45 , pp. 1238-1243
    • Aldridge, K.E.1    Ashcraft, D.2    Cambre, K.3    Pierson, C.L.4    Jenkins, S.G.5    Rosenblatt, J.E.6
  • 2
    • 39449114012 scopus 로고    scopus 로고
    • An increase in the incidence of anaerobic bacteremia: True for tertiary care referral centers but not for community hospitals?
    • Bengualid, V., H. Singh, V. Singh, and J. Berger. 2008. An increase in the incidence of anaerobic bacteremia: true for tertiary care referral centers but not for community hospitals? Clin. Infect. Dis. 46:323-324.
    • (2008) Clin. Infect. Dis. , vol.46 , pp. 323-324
    • Bengualid, V.1    Singh, H.2    Singh, V.3    Berger, J.4
  • 4
    • 33645947318 scopus 로고    scopus 로고
    • 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gramnegative bacteria in the clinical laboratory
    • Bosshard, P. P., R. Zbinden, S. Abels, B. Böddinghaus, M. Altwegg, and E. C. Böttger. 2006. 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gramnegative bacteria in the clinical laboratory. J. Clin. Microbiol. 44:1359-1366.
    • (2006) J. Clin. Microbiol. , vol.44 , pp. 1359-1366
    • Bosshard, P.P.1    Zbinden, R.2    Abels, S.3    Böddinghaus, B.4    Altwegg, M.5    Böttger, E.C.6
  • 5
    • 0024369962 scopus 로고
    • Pathogenicity of the Bacteroides fragilis group
    • Brook, I. 1989. Pathogenicity of the Bacteroides fragilis group. Ann. Clin. Lab. Sci. 19:360-376.
    • (1989) Ann. Clin. Lab. Sci. , vol.19 , pp. 360-376
    • Brook, I.1
  • 6
    • 0035998340 scopus 로고    scopus 로고
    • Clinical review: Bacteremia caused by anaerobic bacteria in children
    • 6. Brook, I. 2002. Clinical review: bacteremia caused by anaerobic bacteria in children. Crit. Care 6:205-211. (Pubitemid 34679178)
    • (2002) Critical Care , vol.6 , Issue.3 , pp. 205-211
    • Brook, I.1
  • 7
    • 0033826086 scopus 로고    scopus 로고
    • The addition of low numbers of 3' thymine bases can be used to improve the hybridization signal of oligonucleotides for use within arrays on nylon supports
    • Brown, T. J., and R. M. Anthony. 2000. The addition of low numbers of 3' thymine bases can be used to improve the hybridization signal of oligonucleotides for use within arrays on nylon supports. J. Microbiol. Methods 42:203-207.
    • (2000) J. Microbiol. Methods , vol.42 , pp. 203-207
    • Brown, T.J.1    Anthony, R.M.2
  • 8
    • 16844367238 scopus 로고    scopus 로고
    • Species-level identification of isolates of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex by sequence analysis of the 16S-23S rRNA gene spacer region
    • Chang, H. C., Y. F. Wei, L. Dijkshoorn, M. Vaneechoutte, C. T. Tang, and T. C. Chang. 2005. Species-level identification of isolates of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex by sequence analysis of the 16S-23S rRNA gene spacer region. J. Clin. Microbiol. 43:1632-1639.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 1632-1639
    • Chang, H.C.1    Wei, Y.F.2    Dijkshoorn, L.3    Vaneechoutte, M.4    Tang, C.T.5    Chang, T.C.6
  • 9
    • 40749150782 scopus 로고    scopus 로고
    • In P. R. Murray, E. J. Baron, J. H. Jorgensen M. L. Landry, and M. A. Pfaller (ed.), Manual of clinical microbiology, 9th ed. American. Society for Microbiology, Washington, DC
    • Citron, D. M., I. R. Poxton, and E. J. Baron. 2007. Bacteroides, Porphyromonas, Prevotella, Fusobacterium, and other anaerobic Gram-negative rods, p. 911-932. In P. R. Murray, E. J. Baron, J. H. Jorgensen, M. L. Landry, and M. A. Pfaller (ed.), Manual of clinical microbiology, 9th ed. American. Society for Microbiology, Washington, DC.
    • (2007) Bacteroides, Porphyromonas, Prevotella, Fusobacterium, and Other Anaerobic Gram-negative Rods , pp. 911-932
    • Citron, D.M.1    Poxton, I.R.2    Baron, E.J.3
  • 10
    • 0032993869 scopus 로고    scopus 로고
    • Evaluation of the Rapid ID 32A system for identification of anaerobic Gram-negative bacilli, excluding the Bacteroides fragilis group
    • Downes, J., A. King, J. Hardie, and I. Phillips. 1999. Evaluation of the Rapid ID 32A system for identification of anaerobic Gram-negative bacilli, excluding the Bacteroides fragilis group. Clin. Microbiol. Infect. 5:319-326.
    • (1999) Clin. Microbiol. Infect. , vol.5 , pp. 319-326
    • Downes, J.1    King, A.2    Hardie, J.3    Phillips, I.4
  • 11
    • 49049109115 scopus 로고    scopus 로고
    • Is the incidence of anaerobic bacteremia decreasing? Analysis of 114,000 blood cultures over a ten-year period
    • Fenner, L., A. F. Widmer, C. Straub, and R. Frei. 2008. Is the incidence of anaerobic bacteremia decreasing? Analysis of 114,000 blood cultures over a ten-year period. J. Clin. Microbiol. 46:2432-2434.
    • (2008) J. Clin. Microbiol. , vol.46 , pp. 2432-2434
    • Fenner, L.1    Widmer, A.F.2    Straub, C.3    Frei, R.4
  • 13
    • 3042835898 scopus 로고    scopus 로고
    • Prevalence of antibiotic resistance in anaerobic bacteria: Worrisome developments
    • Hecht, D. W. 2004. Prevalence of antibiotic resistance in anaerobic bacteria: worrisome developments. Clin. Infect. Dis. 39:92-97.
    • (2004) Clin. Infect. Dis. , vol.39 , pp. 92-97
    • Hecht, D.W.1
  • 15
    • 0025883232 scopus 로고
    • Evaluation of the.RAPID ID 32A system for the identification of Bacteroides fragilis and related organisms
    • Jenkins, S. A., D. B. Drucker, M. G. Keaney, and L. A. Ganguli. 1991. Evaluation of the .RAPID ID 32A system for the identification of Bacteroides fragilis and related organisms. J. Appl. Bacteriol. 71:360-365.
    • (1991) J. Appl. Bacteriol. , vol.71 , pp. 360-365
    • Jenkins, S.A.1    Drucker, D.B.2    Keaney, M.G.3    Ganguli, L.A.4
  • 16
    • 0024453419 scopus 로고
    • Accuracy and reproducibility of the 4-hour ATB 32A method for anaerobe identification
    • Kitch, T. T., and P. C. Appelbaum. 1989. Accuracy and reproducibility of the 4-hour ATB 32A method for anaerobe identification. J. Clin. Microbiol. 27:2509-2513.
    • (1989) J. Clin. Microbiol. , vol.27 , pp. 2509-2513
    • Kitch, T.T.1    Appelbaum, P.C.2
  • 17
    • 45149114027 scopus 로고    scopus 로고
    • Oligonucleotide array-based identification of species in the Acinetobacter calcoaceticus-A. baumannii complex isolated from blood cultures and antimicrobial susceptibility testing of the isolates
    • Ko, W.-C., N.-Y. Lee, S. C. Su, L. Dijkshoorn, M. Vaneechoutte, L.-R. Wang, J.-J. Yan, and T. C. Chang. 2008. Oligonucleotide array-based identification of species in the Acinetobacter calcoaceticus-A. baumannii complex isolated from blood cultures and antimicrobial susceptibility testing of the isolates. J. Clin. Microbiol. 46:2052-2059.
    • (2008) J. Clin. Microbiol. , vol.46 , pp. 2052-2059
    • Ko, W.-C.1    Lee, N.-Y.2    Su, S.C.3    Dijkshoorn, L.4    Vaneechoutte, M.5    Wang, L.-R.6    Yan, J.-J.7    Chang, T.C.8
  • 18
    • 0015092510 scopus 로고
    • Chromosome replication and the division cycle of Escherichia coli Β/τ
    • Kubitschek, H. E., and M. C. Friedman. 1971. Chromosome replication and the division cycle of Escherichia coli Β/τ. J. Bacteriol. 107:95-99.
    • (1971) J. Bacteriol. , vol.107 , pp. 95-99
    • Kubitschek, H.E.1    Friedman, M.C.2
  • 19
    • 0035066982 scopus 로고    scopus 로고
    • Genetic variation in 16S-23S rDNA internal transcribed spacer regions and the possible use of this genetic variation for molecular diagnosis of Bacteroides species
    • 19. Kuwahara, T., I. Norimatsu, H. Nakayama, S. Akimoto, K. Kataoka, H. Arimochi, and Y. Ohnishi. 2001. Genetic variation in 16S-23S rDNA internal transcribed spacer regions and the possible use of this genetic variation for molecular diagnosis of Bacteroides species. Microbiol. Immunol. 45:191-199. (Pubitemid 32290675)
    • (2001) Microbiology and Immunology , vol.45 , Issue.3 , pp. 191-199
    • Kuwahara, T.1    Norimatsu, I.2    Nakayama, H.3    Akimoto, S.4    Kataoka, K.5    Arimochi, H.6    Ohnishi, Y.7
  • 21
  • 22
    • 0037804236 scopus 로고    scopus 로고
    • Intra-chromosomal heterogeneity between the four 16S rRNA gene copies in the genus Veillonella: Implications for phytogeny and taxonomy
    • Marchandin, H., C. Teyssier, M. Siméon De Buochberg, H. Jean-Pierre, C. Carriere, and E. Jumas-Bilak. 2003. Intra-chromosomal heterogeneity between the four 16S rRNA gene copies in the genus Veillonella: implications for phytogeny and taxonomy. Microbiology 149:1493-1501.
    • (2003) Microbiology , vol.149 , pp. 1493-1501
    • Marchandin, H.1    Teyssier, C.2    De Siméon Buochberg, M.3    Jean-Pierre, H.4    Carriere, C.5    Jumas-Bilak, E.6
  • 23
    • 0025515259 scopus 로고
    • Design and analysis of quantitative collaborative studies: Minimum collaborative program
    • McClure, F. D. 1990. Design and analysis of quantitative collaborative studies: minimum collaborative program. J. Assoc. Off. Anal. Chem. 73:953-960.
    • (1990) J. Assoc. Off. Anal. Chem. , vol.73 , pp. 953-960
    • McClure, F.D.1
  • 24
    • 0033834278 scopus 로고    scopus 로고
    • A simple and sensitive method to extract bacterial, yeast and fungal DNA from blood culture material
    • Millar, B. C., X. Jiru, J. E. Moore, and J. A. Earle. 2000. A simple and sensitive method to extract bacterial, yeast and fungal DNA from blood culture material. J. Microbiol. Methods 42:139-147.
    • (2000) J. Microbiol. Methods , vol.42 , pp. 139-147
    • Millar, B.C.1    Jiru, X.2    Moore, J.E.3    Earle, J.A.4
  • 25
    • 0031963208 scopus 로고    scopus 로고
    • Gram-positive anaerobic cocci
    • Murdoch, D. A. 1998. Gram-positive anaerobic cocci. Clin. Microbiol. Rev. 11:81-120.
    • (1998) Clin. Microbiol. Rev. , vol.11 , pp. 81-120
    • Murdoch, D.A.1
  • 26
    • 4344572133 scopus 로고    scopus 로고
    • Quantitative detection of periodontopathogens by real-time PCR
    • DOI 10.1016/j.mimet.2004.06.006, PII S0167701204001708
    • 26. Nonnenmacher, C., A. Dalpke, R. Mutters, and K. Heeg. 2004. Quantitative detection of periodontopathogens by real-time PCR. J. Microbiol. Methods 59:117-125. (Pubitemid 39119918)
    • (2004) Journal of Microbiological Methods , vol.59 , Issue.1 , pp. 117-125
    • Nonnenmacher, C.1    Dalpke, A.2    Mutters, R.3    Heeg, K.4
  • 27
    • 0000011359 scopus 로고
    • In D. H. Persing, F. C. Tenover, T. F. Smith, and T. J. White (ed.), Diagnostic molecular microbiology. American Society for Microbiology, Washington, DC.
    • Relman, D. A. 1993. Universal bacterial 16S rDNA amplification and sequencing, p. 489-495, In D. H. Persing, F. C. Tenover, T. F. Smith, and T. J. White (ed.), Diagnostic molecular microbiology. American Society for Microbiology, Washington, DC.
    • (1993) Universal Bacterial 16S RDNA Amplification and Sequencing , pp. 489-495
    • Relman, D.A.1
  • 28
    • 0031684314 scopus 로고    scopus 로고
    • Identification of classical Propionibacterium species using 16S rDNA-restriction fragment length polymorphisms
    • Riedel, K. H., B. D. Wingfield, and T. J. Britz. 1998. Identification of classical Propionibacterium species using 16S rDNA-restriction fragment length polymorphisms. Syst. Appl. Microbiol. 21:419-428.
    • (1998) Syst. Appl. Microbiol. , vol.21 , pp. 419-428
    • Riedel, K.H.1    Wingfield, B.D.2    Britz, T.J.3
  • 29
    • 33746346757 scopus 로고    scopus 로고
    • Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov and Parabacteroides merdae comb. nov
    • DOI 10.1099/ijs.0.64192-0
    • 29. Sakamoto, M., and Y. Benno. 2006. Reclassification of Bacteroides distasonis, Bacteroides goldsteinii, and Bacteroides merdae as Parabacteroides distasonis gen. nov, comb. nov., Parabacteroides goldsteinii comb, nov., and Parabacteroides merdae comb. nov. Int. J. Syst. Bacteriol. 56:1599-1605. (Pubitemid 44109066)
    • (2006) International Journal of Systematic and Evolutionary Microbiology , vol.56 , Issue.7 , pp. 1599-1605
    • Sakamoto, M.1    Benno, Y.2
  • 31
    • 43249095031 scopus 로고    scopus 로고
    • Genotypic diversity of anaerobic isolates from bloodstream infections
    • Simmon, K. E., S. Mirrett, L. B. Reller, and C. A. Petti. 2008. Genotypic diversity of anaerobic isolates from bloodstream infections. J. Clin. Microbiol. 46:1596-1601.
    • (2008) J. Clin. Microbiol. , vol.46 , pp. 1596-1601
    • Simmon, K.E.1    Mirrett, S.2    Reller, L.B.3    Petti, C.A.4
  • 32
    • 0037809624 scopus 로고    scopus 로고
    • Peptostreptococcus micros in primary endodontic Infections as detected by 16S rDNA-based polymerase chain reaction
    • Siqueira, J. F., Jr., I. N. Rocas, A. F. Andrade, and M. de Uzeda. 2003. Peptostreptococcus micros in primary endodontic Infections as detected by 16S rDNA-based polymerase chain reaction. J. Endod. 29:111-113.
    • (2003) J. Endod. , vol.29 , pp. 111-113
    • Siqueira Jr., J.F.1    Rocas, I.N.2    Andrade, A.F.3    De Uzeda, M.4
  • 34
    • 16844385393 scopus 로고    scopus 로고
    • Evaluation of 16S rRNA sequencing and reevaluation of a short biochemical scheme for identification of clinically significant Bacteroides species
    • DOI 10.1128/JCM.43.4.1531-1537.2005
    • 34. Song, Y., C. Liu, M. Bolanos, J. Lee, M. McTeague, and S. M. Finegold. 2005. Evaluation of 16S rRNA sequencing and reevaluation of a short biochemical scheme for identification of clinically significant Bacteroides species. J. Clin. Microbiol. 43:1531-1537. (Pubitemid 40491185)
    • (2005) Journal of Clinical Microbiology , vol.43 , Issue.4 , pp. 1531-1537
    • Song, Y.1    Liu, C.2    Bolanos, M.3    Lee, J.4    McTeague, M.5    Finegold, S.M.6
  • 35
    • 33847024276 scopus 로고    scopus 로고
    • Development of a flow chart for identification of gram-positive anaerobic cocci in the clinical laboratory
    • Song, Y., C. Liu, and S. M. Finegold. 2007. Development of a flow chart for identification of gram-positive anaerobic cocci in the clinical laboratory. J. Clin. Microbiol. 45:512-516.
    • (2007) J. Clin. Microbiol. , vol.45 , pp. 512-516
    • Song, Y.1    Liu, C.2    Finegold, S.M.3
  • 36
    • 49349106960 scopus 로고    scopus 로고
    • Rapid identification of oral anaerobic bacteria cultivated from subgingival biofilm by MALDI-TOF-MS
    • Stingu, C. S., A. C. Rodloff, H. Jentsch, R. Schaumann, and K. Eschrich. 2008. Rapid identification of oral anaerobic bacteria cultivated from subgingival biofilm by MALDI-TOF-MS. Oral Microbiol. Immunol. 23:372-376.
    • (2008) Oral Microbiol. Immunol. , vol.23 , pp. 372-376
    • Stingu, C.S.1    Rodloff, A.C.2    Jentsch, H.3    Schaumann, R.4    Eschrich, K.5
  • 37
    • 60149113101 scopus 로고    scopus 로고
    • Phenotypic and genotypic analyses of clinical Fusobacterium nucleatum and Fusobacterium periodonticum isolates from the human gut
    • Strauss, J., A. White, C. Ambrose, J. McDonald, and E. Allen-Vercoe. 2008. Phenotypic and genotypic analyses of clinical Fusobacterium nucleatum and Fusobacterium periodonticum isolates from the human gut. Anaerobe 14: 301-309.
    • (2008) Anaerobe , vol.14 , pp. 301-309
    • Strauss, J.1    White, A.2    Ambrose, C.3    McDonald, J.4    Allen-Vercoe, E.5
  • 38
    • 0033831544 scopus 로고    scopus 로고
    • PCRrestriction fragment length polymorphism analysis for identification of Bacteroides spp. and characterization of nitroimidazole resistance genes
    • Stubbs, S. L., J. S. Brazier, P. R. Talbot, and B. I. Duerden. 2000. PCRrestriction fragment length polymorphism analysis for identification of Bacteroides spp. and characterization of nitroimidazole resistance genes. J. Clin. Microbiol. 38:3209-3213.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 3209-3213
    • Stubbs, S.L.1    Brazier, J.S.2    Talbot, P.R.3    Duerden, B.I.4
  • 40
    • 33845562609 scopus 로고    scopus 로고
    • Array-based identification of species of the genera Abiotrophia, Enterococcus, Granulicatella, and Streptococcus
    • Tung, S. K., L. J. Teng, M. Vaneechoutte, H. M. Chen, and T. C. Chang. 2006. Array-based identification of species of the genera Abiotrophia, Enterococcus, Granulicatella, and Streptococcus. J. Clin. Microbiol. 44:4414-4424.
    • (2006) J. Clin. Microbiol. , vol.44 , pp. 4414-4424
    • Tung, S.K.1    Teng, L.J.2    Vaneechoutte, M.3    Chen, H.M.4    Chang, T.C.5
  • 41
    • 34247282768 scopus 로고    scopus 로고
    • Identification of species of Abiotrophia, Enterococcus, Granulicatella and Streptococcus by sequence analysis of the ribosomal 16S-23S intergenic spacer region
    • Tung, S. K., L. J. Teng, M. Vaneechoutte, H. M. Chen, and T. C. Chang. 2007. Identification of species of Abiotrophia, Enterococcus, Granulicatella and Streptococcus by sequence analysis of the ribosomal 16S-23S intergenic spacer region. J. Med. Microbiol. 56:504-513.
    • (2007) J. Med. Microbiol. , vol.56 , pp. 504-513
    • Tung, S.K.1    Teng, L.J.2    Vaneechoutte, M.3    Chen, H.M.4    Chang, T.C.5
  • 42
    • 35448985445 scopus 로고    scopus 로고
    • Bacteroides: The good, the bad, and the nitty-gritty
    • Wexler, H. M. 2007. Bacteroides: the good, the bad, and the nitty-gritty. Clin. Microbiol. Rev. 20:593-621.
    • (2007) Clin. Microbiol. Rev. , vol.20 , pp. 593-621
    • Wexler, H.M.1


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