DNA microarray analysis of Salmonella serotype Typhimurium strains causing different symptoms of disease

BMC Microbiology

Volumn 10, Issue , 2010, Pages

  Litrup, Eva ^a   Torpdahl, Mia ^a   Malorny, Burkhard ^b   Huehn, Stephan ^b   Helms, Morten ^c   Christensen, Henrik ^d   Nielsen, Eva M ^a  

^a STATENS SERUM INSTITUT   (Denmark)

^b FEDERAL INSTITUTE FOR RISK ASSESSMENT   (Germany)

^c ROSKILDE HOSPITAL   (Denmark)

^d UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

VIRULENCE FACTOR;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BACTERIAL INFECTION; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BACTERIOPHAGE; BACTERIUM ISOLATE; CLINICAL ARTICLE; CLONE; DISEASE SEVERITY; DNA DETERMINATION; DNA MICROARRAY; FIMBRIA; HUMAN; NONHUMAN; PATHOGENICITY; PLASMID; SALMONELLA TYPHIMURIUM; SEROTYPE; SYMPTOM; TRANSPOSON; ADOLESCENT; ADULT; BACTERIOPHAGE TYPING; CHILD; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; HOSPITALIZATION; INFANT; METHODOLOGY; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY; MIDDLE AGED; PRESCHOOL CHILD; PROSPECTIVE STUDY; PULSED FIELD GEL ELECTROPHORESIS; SALMONELLOSIS; SEROTYPING; VARIABLE NUMBER OF TANDEM REPEAT;

SALMONELLA; SALMONELLA ENTERICA SUBSP. ENTERICA;

ADOLESCENT; ADULT; BACTERIOPHAGE TYPING; CHILD; CHILD, PRESCHOOL; CLUSTER ANALYSIS; ELECTROPHORESIS, GEL, PULSED-FIELD; FIMBRIAE, BACTERIAL; HUMANS; INFANT; MICROBIAL SENSITIVITY TESTS; MIDDLE AGED; MINISATELLITE REPEATS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROSPECTIVE STUDIES; SALMONELLA INFECTIONS; SALMONELLA TYPHIMURIUM; SEQUENCE ANALYSIS, DNA; SEROTYPING; SEVERITY OF ILLNESS INDEX; VIRULENCE FACTORS;

EID: 77950426077     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-10-96     Document Type: Article

References (39)

1. Summary of notifiable diseases - United States, 2006. SJ McNabb RA Jajosky PA Hall-Baker DA Adams P Sharp C Worshams WJ Anderson AJ Javier GJ Jones DA Nitschke, et al. MMWR Morb Mortal Wkly Rep 2008 55 1 92 18354375
2. FoodNet estimate of the burden of illness caused by nontyphoidal Salmonella infections in the United States. AC Voetsch TJ Van Gilder FJ Angulo MM Farley S Shallow R Marcus PR Cieslak VC Deneen RV Tauxe, Clin Infect Dis 2004 38 Suppl 3 127 S134 10.1086/381578 15095181 (Pubitemid 38553316)
3. Anonymous, Annual Report on Zoonoses in Denmark 2006 2006
4. Salmonella infections in immunocompromised adults. MA Gordon, J Infect 2008 56 413 422 10.1016/j.jinf.2008.03.012 18474400
5. Host transmission of Salmonella enterica serovar Typhimurium is controlled by virulence factors and indigenous intestinal microbiota. TD Lawley DM Bouley YE Hoy C Gerke DA Relman DM Monack, Infect Immun 2008 76 403 416 10.1128/IAI.01189-07 17967858
6. Salmonella Pathogenicity Islands. E Morgan, Salmonella Molecular Biology and Pathogenesis Horizon Bioscience, Rhen M, Maskell D, Mastroeni P, Threlfall EJ, 2007
7. Salmonella -induced enteritis: molecular pathogenesis and therapeutic implications. AN Layton EE Galyov, Expert Rev Mol Med 2007 9 1 17 10.1017/S1462399407000373 17605831
8. Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar Typhimurium DNA microarray. K Chan S Baker CC Kim CS Detweiler G Dougan S Falkow, J Bacteriol 2003 185 553 563 10.1128/JB.185.2.553-563.2003 12511502 (Pubitemid 36070482)
9. Variability in occurrence of multiple prophage genes in Salmonella Typhimurium strains isolated in Slovak Republic. H Drahovska E Mikasova T Szemes A Ficek M Sasik V Majtan J Turna, FEMS Microbiol Lett 2007 270 237 244 10.1111/j.1574-6968.2007.00674.x 17355601 (Pubitemid 46597362)
10. Salmonella enterica serotype Typhimurium and its host-adapted variants. W Rabsch HL Andrews RA Kingsley R Prager H Tschape LG Adams AJ Baumler, Infect Immun 2002 70 2249 2255 10.1128/IAI.70.5.2249-2255.2002 11953356 (Pubitemid 34408361)
11. Salmonella typhimurium bacteremia: association with the virulence plasmid. J Fierer M Krause R Tauxe D Guiney, J Infect Dis 1992 166 639 642 1500749
12. Diverse virulence traits underlying different clinical outcomes of Salmonella infection. J Fierer DG Guiney, J Clin Invest 2001 107 775 780 10.1172/JCI12561 11285291 (Pubitemid 32274025)
13. Molecular characterisation of Salmonella strains by an oligonucleotide multiprobe microarray. B Malorny C Bunge B Guerra S Prietz R Helmuth, Mol Cell Probes 2007 21 56 65 10.1016/j.mcp.2006.08.005 17029709 (Pubitemid 44854464)
14. Microarray for molecular typing of Salmonella enterica serovars. J Scaria RU Palaniappan D Chiu JA Phan L Ponnala P McDonough YT Grohn S Porwollik M McClelland CS Chiou, et al. Mol Cell Probes 2008 22 238 243 10.1016/j.mcp.2008. 04.002 18554865
15. Characterization of Salmonella enterica subspecies I genovars by use of microarrays. S Porwollik EF Boyd C Choy P Cheng L Florea E Proctor M McClelland, J Bacteriol 2004 186 5883 5898 10.1128/JB.186.17.5883-5898.2004 15317794 (Pubitemid 39128662)
16. DNA fingerprinting of Salmonella enterica subsp. enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci. BA Lindstedt E Heir E Gjernes G Kapperud, J Clin Microbiol 2003 41 1469 1479 10.1128/JCM.41.4.1469-1479.2003 12682132 (Pubitemid 36428091)
17. Multilocus sequence typing. MC Enright BG Spratt, Trends Microbiol 1999 7 482 487 10.1016/S0966-842X(99)01609-1 10603483
18. Multiresistant Salmonella Typhimurium DT 104 and Salmonella bacteraemia. EJ Threlfall LR Ward B Rowe, Lancet 1998 352 287 288 10.1016/S0140-6736(05) 60261-9 9690414 (Pubitemid 28340152)
19. Identification of diminished tissue culture invasiveness among multiple antibiotic resistant Salmonella Typhimurium DT104. SA Carlson M Browning KE Ferris BD Jones, Microb Pathog 2000 28 37 44 10.1006/mpat.1999.0322 10623562 (Pubitemid 30037814)
20. Prior antimicrobial agent use increases the risk of sporadic infections with multidrug-resistant Salmonella enterica serotype Typhimurium: a FoodNet case-control study, 1996-1997. MK Glynn V Reddy L Hutwagner T Rabatsky-Ehr B Shiferaw DJ Vugia S Segler J Bender TJ Barrett FJ Angulo, Clin Infect Dis 2004 38 Suppl 3 227 S236 10.1086/381591 15095194 (Pubitemid 38553329)
21. Prevalence of Escherichia coli O157:H7 prophage-like sequences among German Salmonella enterica serotype Typhimurium phage types and their use in detection of phage type DT104 by the polymerase chain reaction. B Malorny A Schroeter C Bunge R Helmuth, Vet Microbiol 2002 87 253 265 10.1016/S0378- 1135(02)00064-0 12052335 (Pubitemid 34607501)
22. Distribution of prophages and SGI-1 antibiotic-resistance genes among different Salmonella enterica serovar Typhimurium isolates. AP Hermans AM Beuling AH van Hoek HJ Aarts T Abee MH Zwietering, Microbiology 2006 152 2137 2147 10.1099/mic.0.28850-0 16804187 (Pubitemid 44070468)
23. Variable assortment of prophages provides a transferable repertoire of pathogenic determinants in Salmonella. N Figueroa-Bossi S Uzzau D Maloriol L Bossi, Mol Microbiol 2001 39 260 271 10.1046/j.1365-2958.2001.02234.x 11136448 (Pubitemid 32113500)
24. Identification of novel Salmonella enterica serovar Typhimurium DT104-specific prophage and nonprophage chromosomal sequences among serovar Typhimurium isolates by genomic subtractive hybridization. AP Hermans T Abee MH Zwietering HJ Aarts, Appl Environ Microbiol 2005 71 4979 4985 10.1128/AEM.71.9.4979-4985.2005 16151076 (Pubitemid 41338221)
25. Characterisation of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104). FJ Cooke DJ Brown M Fookes D Pickard A Ivens J Wain M Roberts RA Kingsley NR Thomson G Dougan, J Bacteriol 2008 190 8155 8162 10.1128/JB.00636-08 18849424
26. Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. J Parkhill G Dougan KD James NR Thomson D Pickard J Wain C Churcher KL Mungall SD Bentley MT Holden, et al. Nature 2001 413 848 852 10.1038/35101607 11677608 (Pubitemid 33026852)
27. Composition, acquisition, and distribution of the Vi exopolysaccharide- encoding Salmonella enterica pathogenicity island SPI-7. D Pickard J Wain S Baker A Line S Chohan M Fookes A Barron PO Gaora JA Chabalgoity N Thanky, et al. J Bacteriol 2003 185 5055 5065 10.1128/JB.185.17.5055-5065.2003 12923078 (Pubitemid 37021967)
28. Short-term Signatures of Evolutionary Change in the Salmonella enterica serovar Typhimurium 14028 Genome. T Jarvik C Smillie EA Groisman H Ochman, J Bacteriol 2009 192 560 567 10.1128/JB.01233-09 19897643
29. Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. RA Kingsley CL Msefula NR Thomson S Kariuki KE Holt MA Gordon D Harris L Clarke S Whitehead V Sangal, et al. Genome Res 2009 19 2279 2287 10.1101/gr.091017.109 19901036
30. Health impact of zoonotic Salmonella and other foodborne bacterial gastrointestinal infections, with particular reference to antimicrobial drug resistance in Salmonella Typhimurium. M Helms, PhD Thesis Danish Epidemiology Science Centre, Statens Serum Institut 2005
31. PA Grimont FX Weill, Antigenic formulae of the Salmonella serovars 2007
32. Clinical and Laboratory Standards Institute. Performance standards for antimicrobial susceptility testing, 18th international supplement. CLSI document M100-S18. Wayne, PA: CLSI; 2008. PA Wayne, CLSI 2008
33. A new phage-typing scheme for Salmonella typhi-murium. BR Callow, J Hyg (Lond) 1959 57 346 359 13807011
34. Bacteriophage-typing designations of Salmonella typhimurium. ES Anderson LR Ward MJ De Saxe JDH de Sa, J Hyg (Lond) 1977 78 297 300 321679
35. Poultry-associated Salmonella enterica subsp. enterica serovar 4,12:d:- reveals high clonality and a distinct pathogenicity gene repertoire. S Huehn C Bunge E Junker R Helmuth B Malorny, Appl Environ Microbiol 2009 75 1011 1020 10.1128/AEM.02187-08 19114530
36. Tandem repeat analysis for surveillance of human Salmonella Typhimurium infections. M Torpdahl G Sorensen BA Lindstedt EM Nielsen, Emerg Infect Dis 2007 13 388 395 10.3201/eid1303.060460 17552091 (Pubitemid 46348128)
37. Development of a new nomenclature for Salmonella Typhimurium multi-locus tandem repeats analysis (MLVA). J Larsson M Torpdahl RF Petersen G Sørensen BA Lindstedt EM Nielsen, Euro Surveill 2009 14 ii 19174
38. Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet. EM Ribot MA Fair R Gautom DN Cameron SB Hunter B Swaminathan TJ Barrett, Foodborne Pathog Dis 2006 3 59 67 10.1089/fpd.2006.3.59 16602980
39. Salmonella Typhi, the causative agent of typhoid fever, is approximately 50,000 years old. C Kidgell U Reichard J Wain B Linz M Torpdahl G Dougan M Achtman, Infect Genet Evol 2002 2 39 45 10.1016/S1567-1348(02)00089-8 12797999