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Volumn 11, Issue , 2010, Pages

Multiconstrained gene clustering based on generalized projections

Author keywords

[No Author keywords available]

Indexed keywords

CLUSTERING SOLUTIONS; EFFECTIVE PERFORMANCE; GENERALIZED PROJECTIONS; GENERALIZED PROJECTORS; MULTIPLE CONSTRAINT; OPTIMAL CLUSTERING; PERFORMANCE MEASURE; SOFT CLUSTERING;

EID: 77950375358     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-164     Document Type: Article
Times cited : (2)

References (44)
  • 1
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci 1998, 95(25):14863-8.
    • (1998) Proc Natl Acad Sci , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 3
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation
    • Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, Lander ES, Golub TR. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc Natl Acad Sci 1999, 96(6):2907-12.
    • (1999) Proc Natl Acad Sci , vol.96 , Issue.6 , pp. 2907-2912
    • Tamayo, P.1    Slonim, D.2    Mesirov, J.3    Zhu, Q.4    Kitareewan, S.5    Dmitrovsky, E.6    Lander, E.S.7    Golub, T.R.8
  • 4
    • 17944394324 scopus 로고    scopus 로고
    • Fuzzy C-means method for clustering microarray data
    • Dembélé D, Kastner P. Fuzzy C-means method for clustering microarray data. Bioinformatics 2003, 19:973-980.
    • (2003) Bioinformatics , vol.19 , pp. 973-980
    • Dembélé, D.1    Kastner, P.2
  • 5
    • 4944252468 scopus 로고    scopus 로고
    • Using hidden Markov models to analyze gene expression time course data
    • Schliep A, Schönhuth A, Steinhoff C. Using hidden Markov models to analyze gene expression time course data. Bioinformatics 2003, 19:i255-i263.
    • (2003) Bioinformatics , vol.19
    • Schliep, A.1    Schönhuth, A.2    Steinhoff, C.3
  • 6
    • 0035979259 scopus 로고    scopus 로고
    • Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments
    • Kerr MK, Churchill GA. Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments. Proc Natl Acad Sci 2001, 98(16):8961-5.
    • (2001) Proc Natl Acad Sci , vol.98 , Issue.16 , pp. 8961-8965
    • Kerr, M.K.1    Churchill, G.A.2
  • 7
    • 8844277626 scopus 로고    scopus 로고
    • Analyzing time series gene expression data
    • Bar-Joseph Z. Analyzing time series gene expression data. Bioinformatics 2004, 20:2493-2503.
    • (2004) Bioinformatics , vol.20 , pp. 2493-2503
    • Bar-Joseph, Z.1
  • 8
    • 0038014879 scopus 로고    scopus 로고
    • Co-clustering of biological networks and gene expression data
    • Hanisch D, Zien A, Zimmer R, Lengauer T. Co-clustering of biological networks and gene expression data. Bioinformatics 2002, 18(Suppl 1):S145-54.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Hanisch, D.1    Zien, A.2    Zimmer, R.3    Lengauer, T.4
  • 9
    • 33645289673 scopus 로고    scopus 로고
    • Incorporating gene functions as priors in model-based clustering of microarray gene expression data
    • Pan W. Incorporating gene functions as priors in model-based clustering of microarray gene expression data. Bioinformatics 2006, 22(7):795-801.
    • (2006) Bioinformatics , vol.22 , Issue.7 , pp. 795-801
    • Pan, W.1
  • 10
    • 33646895693 scopus 로고    scopus 로고
    • Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data
    • Huang D, Pan W. Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data. Bioinformatics 2006, 22(10):1259-1268.
    • (2006) Bioinformatics , vol.22 , Issue.10 , pp. 1259-1268
    • Huang, D.1    Pan, W.2
  • 11
    • 33745634665 scopus 로고    scopus 로고
    • Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets
    • Aubry M, Monnier A, Chicault C, de Tayrac M, Galibert MD, Burgun A, Mosser J. Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets. BMC Bioinformatics 2006, 7:241.
    • (2006) BMC Bioinformatics , vol.7 , pp. 241
    • Aubry, M.1    Monnier, A.2    Chicault, C.3    de Tayrac, M.4    Galibert, M.D.5    Burgun, A.6    Mosser, J.7
  • 12
    • 34547840226 scopus 로고    scopus 로고
    • Annotating gene function by combining expression data with a modular gene network
    • Shiga M, Takigawa I, Mamitsuka H. Annotating gene function by combining expression data with a modular gene network. Bioinformatics 2007, 23(13):i468-i478.
    • (2007) Bioinformatics , vol.23 , Issue.13
    • Shiga, M.1    Takigawa, I.2    Mamitsuka, H.3
  • 13
    • 60049085522 scopus 로고    scopus 로고
    • Fuzzy c-means clustering with prior biological knowledge
    • Tari L, Baral C, Kim S. Fuzzy c-means clustering with prior biological knowledge. J Biomed Inform 2009, 42:74-81.
    • (2009) J Biomed Inform , vol.42 , pp. 74-81
    • Tari, L.1    Baral, C.2    Kim, S.3
  • 15
    • 67650742243 scopus 로고    scopus 로고
    • Enhancing MEDLINE document clustering by incorporating MeSH semantic similarity
    • Zhu S, Zeng J, Mamitsuka H. Enhancing MEDLINE document clustering by incorporating MeSH semantic similarity. Bioinformatics 2009, 25(15):1944-1951.
    • (2009) Bioinformatics , vol.25 , Issue.15 , pp. 1944-1951
    • Zhu, S.1    Zeng, J.2    Mamitsuka, H.3
  • 17
    • 0003968346 scopus 로고    scopus 로고
    • Vector space projections: a numerical approach to signal and image processing, neural nets, and optics
    • New York: Wiley
    • Stark H, Yang Y. Vector space projections: a numerical approach to signal and image processing, neural nets, and optics. 1998, New York: Wiley.
    • (1998)
    • Stark, H.1    Yang, Y.2
  • 18
    • 33645468884 scopus 로고    scopus 로고
    • Microarray missing data imputation based on a set theoretic framework and biological knowledge
    • Gan X, Liew AWC, Yan H. Microarray missing data imputation based on a set theoretic framework and biological knowledge. Nucleic Acids Res 2006, 34:1608-1619.
    • (2006) Nucleic Acids Res , vol.34 , pp. 1608-1619
    • Gan, X.1    Liew, A.W.C.2    Yan, H.3
  • 19
  • 20
    • 41749101252 scopus 로고    scopus 로고
    • Markov Random Field-based Statistical Character Structure Modeling for Handwritten Chinese Character Recognition
    • Zeng J, Liu ZQ. Markov Random Field-based Statistical Character Structure Modeling for Handwritten Chinese Character Recognition. IEEE Trans Pattern Anal Mach Intell 2008, 30(5):767-780.
    • (2008) IEEE Trans Pattern Anal Mach Intell , vol.30 , Issue.5 , pp. 767-780
    • Zeng, J.1    Liu, Z.Q.2
  • 21
    • 45549107275 scopus 로고    scopus 로고
    • Type-2 fuzzy Markov random fields and their application to handwritten Chinese character recognition
    • Zeng J, Liu ZQ. Type-2 fuzzy Markov random fields and their application to handwritten Chinese character recognition. IEEE Trans Fuzzy Syst 2008, 16(3):747-760.
    • (2008) IEEE Trans Fuzzy Syst , vol.16 , Issue.3 , pp. 747-760
    • Zeng, J.1    Liu, Z.Q.2
  • 22
    • 57049112628 scopus 로고    scopus 로고
    • Region-Level Image Authentication Using Bayesian Structural Content Abstraction
    • Feng W, Liu ZQ. Region-Level Image Authentication Using Bayesian Structural Content Abstraction. IEEE Trans Image Process 2008, 17(12):2413-2424.
    • (2008) IEEE Trans Image Process , vol.17 , Issue.12 , pp. 2413-2424
    • Feng, W.1    Liu, Z.Q.2
  • 23
    • 70350576590 scopus 로고    scopus 로고
    • Cascade Markov random fields for stroke extraction of Chinese characters
    • Zeng J, Feng W, Xie L, Liu ZQ. Cascade Markov random fields for stroke extraction of Chinese characters. Inf Sci 2010, 180:301-311.
    • (2010) Inf Sci , vol.180 , pp. 301-311
    • Zeng, J.1    Feng, W.2    Xie, L.3    Liu, Z.Q.4
  • 25
    • 33745147865 scopus 로고    scopus 로고
    • Type-2 Fuzzy Hidden Markov Models and Their Application to Speech Recognition
    • Zeng J, Liu ZQ. Type-2 Fuzzy Hidden Markov Models and Their Application to Speech Recognition. IEEE Trans Fuzzy Syst 2006, 14(3):454-467.
    • (2006) IEEE Trans Fuzzy Syst , vol.14 , Issue.3 , pp. 454-467
    • Zeng, J.1    Liu, Z.Q.2
  • 27
    • 0037480738 scopus 로고    scopus 로고
    • Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation
    • Lord PW, Stevens RD, Brass A, Goble CA. Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 2003, 19:1275-1283.
    • (2003) Bioinformatics , vol.19 , pp. 1275-1283
    • Lord, P.W.1    Stevens, R.D.2    Brass, A.3    Goble, C.A.4
  • 28
    • 8844285933 scopus 로고    scopus 로고
    • Gene-Ontology-based clustering of gene expression data
    • Adryan B, Schuh R. Gene-Ontology-based clustering of gene expression data. Bioinformatics 2004, 20:2851-2852.
    • (2004) Bioinformatics , vol.20 , pp. 2851-2852
    • Adryan, B.1    Schuh, R.2
  • 29
    • 19544366640 scopus 로고    scopus 로고
    • A knowledge-driven approach to cluster validity assessment
    • Bolshakova N, Azuaje F, Cunningham P. A knowledge-driven approach to cluster validity assessment. Bioinformatics 2005, 21:2546-2547.
    • (2005) Bioinformatics , vol.21 , pp. 2546-2547
    • Bolshakova, N.1    Azuaje, F.2    Cunningham, P.3
  • 30
    • 33645821454 scopus 로고    scopus 로고
    • Assessing semantic similarity measures for the characterization of human regulatory pathways
    • Guo X, Liu R, Shriver CD, Hu H, Liebman MN. Assessing semantic similarity measures for the characterization of human regulatory pathways. Bioinformatics 2006, 22:967-973.
    • (2006) Bioinformatics , vol.22 , pp. 967-973
    • Guo, X.1    Liu, R.2    Shriver, C.D.3    Hu, H.4    Liebman, M.N.5
  • 31
    • 33847103528 scopus 로고    scopus 로고
    • Cluster analysis of protein array results via similarity of Gene Ontology annotation
    • Wolting C, McGlade CJ, Tritchler D. Cluster analysis of protein array results via similarity of Gene Ontology annotation. BMC Bioinformatics 2006, 7:338.
    • (2006) BMC Bioinformatics , vol.7 , pp. 338
    • Wolting, C.1    McGlade, C.J.2    Tritchler, D.3
  • 32
    • 33749431392 scopus 로고    scopus 로고
    • Validation and functional annotation of expression-based clusters based on gene ontology
    • Steuer R, Humburg P, Selbig J. Validation and functional annotation of expression-based clusters based on gene ontology. BMC Bioinformatics 2006, 7:380.
    • (2006) BMC Bioinformatics , vol.7 , pp. 380
    • Steuer, R.1    Humburg, P.2    Selbig, J.3
  • 36
    • 0034616930 scopus 로고    scopus 로고
    • Functional discovery via a compendium of expression profiles
    • Hughes TR, et al. Functional discovery via a compendium of expression profiles. Cell 2000, 102:109-26.
    • (2000) Cell , vol.102 , pp. 109-126
    • Hughes, T.R.1
  • 38
    • 0003808670 scopus 로고
    • Introductory Mathematical Statistics
    • New York: John Wiley & Sons
    • Kreyszig E. Introductory Mathematical Statistics. 1970, New York: John Wiley & Sons.
    • (1970)
    • Kreyszig, E.1
  • 39
    • 42449162398 scopus 로고    scopus 로고
    • Structural property of regulatory elements in human promoters
    • Cao XQ, Zeng J, Yan H. Structural property of regulatory elements in human promoters. Phys Rev E 2008, 77:041908.
    • (2008) Phys Rev E , vol.77 , pp. 041908
    • Cao, X.Q.1    Zeng, J.2    Yan, H.3
  • 40
    • 58149143162 scopus 로고    scopus 로고
    • Structural properties of replication origins in yeast DNA sequences
    • Cao XQ, Zeng J, Yan H. Structural properties of replication origins in yeast DNA sequences. Phys Biol 2008, 5:036012.
    • (2008) Phys Biol , vol.5 , pp. 036012
    • Cao, X.Q.1    Zeng, J.2    Yan, H.3
  • 41
    • 68249134252 scopus 로고    scopus 로고
    • Physical signals for protein-DNA recognition. Phys
    • Cao XQ, Zeng J, Yan H. Physical signals for protein-DNA recognition. Phys. Biol 2009, 6:036012.
    • (2009) Biol , vol.6 , pp. 036012
    • Cao, X.Q.1    Zeng, J.2    Yan, H.3
  • 42
    • 70350215723 scopus 로고    scopus 로고
    • Finding human promoter groups based on DNA physical properties
    • Zeng J, Cao XQ, Zhao H, Yan H. Finding human promoter groups based on DNA physical properties. Phys Rev E 2009, 80:041917.
    • (2009) Phys Rev E , vol.80 , pp. 041917
    • Zeng, J.1    Cao, X.Q.2    Zhao, H.3    Yan, H.4
  • 44
    • 69249146630 scopus 로고    scopus 로고
    • Towards accurate human promoter recognition: a review of currently used sequence features and classification methods
    • Zeng J, Zhu S, Yan H. Towards accurate human promoter recognition: a review of currently used sequence features and classification methods. Briefings in Bioinformatics 2009, 10(5):498-508.
    • (2009) Briefings in Bioinformatics , vol.10 , Issue.5 , pp. 498-508
    • Zeng, J.1    Zhu, S.2    Yan, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.