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Volumn 5, Issue 3, 2008, Pages

Structural properties of replication origins in yeast DNA sequences

Author keywords

[No Author keywords available]

Indexed keywords

CELL CYCLE PROTEIN; DNA; DNA BINDING PROTEIN; NUCLEAR PROTEIN; ORIGIN RECOGNITION COMPLEX; PROTEIN;

EID: 58149143162     PISSN: 14783967     EISSN: 14783975     Source Type: Journal    
DOI: 10.1088/1478-3975/5/3/036012     Document Type: Article
Times cited : (11)

References (25)
  • 1
    • 0029039118 scopus 로고
    • Sequence-dependent bending propensity of DNA as revealed by DNase I: Parameters for trinucleotides
    • Brukner I, Sanchez R, Suck D and Pongor S 1995 Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides EMBO J. 14 1812-8
    • (1995) EMBO J. , vol.14 , pp. 1812-1818
    • Brukner, I.1    Sanchez, R.2    Suck, D.3    Pongor, S.4
  • 2
    • 0034614487 scopus 로고    scopus 로고
    • Sequence dependent DNA structure: Tetranucleotide conformational maps
    • Packer M J, Dauncey M P and Hunter C A 2000 Sequence dependent DNA structure: tetranucleotide conformational maps J. Mol. Biol. 295 85-103
    • (2000) J. Mol. Biol. , vol.295 , Issue.1 , pp. 85-103
    • Packer, M.J.1    Dauncey, M.P.2    Hunter, C.A.3
  • 3
    • 35548987996 scopus 로고    scopus 로고
    • Sequence-dependent DNA deformability studied using molecular dynamics simulations
    • Fujii S, Kono H, Takenaka S, Go N and Sarai A 2007 Sequence-dependent DNA deformability studied using molecular dynamics simulations Nucl. Acids Res. 35 6063-74
    • (2007) Nucl. Acids Res. , vol.35 , Issue.18 , pp. 6063-6074
    • Fujii, S.1    Kono, H.2    Takenaka, S.3    Go, N.4    Sarai, A.5
  • 5
    • 27644460480 scopus 로고    scopus 로고
    • Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA
    • Gowers D M, Wilson G G and Halford S E 2005 Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA Proc. Natl Acad. Sci. USA 102 15883-8
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , Issue.44 , pp. 15883-15888
    • Gowers, D.M.1    Wilson, G.G.2    Halford, S.E.3
  • 6
    • 28044460036 scopus 로고    scopus 로고
    • Target site localization by site-specific DNA-binding proteins
    • Widom J 2005 Target site localization by site-specific DNA-binding proteins Proc. Natl Acad. Sci. USA 102 16909-10
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , Issue.47 , pp. 16909-16910
    • Widom, J.1
  • 8
    • 41349090317 scopus 로고    scopus 로고
    • Complexes of semiflexible polyelectrolytes and charged spheres as models for salt-modulated nucleosomal structures
    • Kunze K K and Netz R R 2002 Complexes of semiflexible polyelectrolytes and charged spheres as models for salt-modulated nucleosomal structures Phys. Rev. E 66 011918
    • (2002) Phys. Rev. , vol.66 , Issue.1 , pp. 011918
    • Kunze, K.K.1    Netz, R.R.2
  • 9
    • 0032575756 scopus 로고    scopus 로고
    • DNA structure in human RNA polymerase II promoters
    • Pedersen A G, Baldi P, Chauvin Y and Soren B 1998 DNA structure in human RNA polymerase II promoters J. Mol. Biol. 281 663-73
    • (1998) J. Mol. Biol. , vol.281 , Issue.4 , pp. 663-673
    • Pedersen, A.G.1    Baldi, P.2    Chauvin, Y.3    Soren, B.4
  • 10
    • 0036672692 scopus 로고    scopus 로고
    • Sequence-dependent flexibility in promoter sequences
    • Tsai L, Luo L and Sun Z 2002 Sequence-dependent flexibility in promoter sequences J. Biomol. Struct. Dyn. 20 127-34
    • (2002) J. Biomol. Struct. Dyn. , vol.20 , pp. 127-134
    • Tsai, L.1    Luo, L.2    Sun, Z.3
  • 11
    • 7444244495 scopus 로고    scopus 로고
    • Core promoter elements of eukaryotic genes have a highly distinctive mechanical property
    • Fukue Y, Sumida N, Nishikawa J I and Ohyama T 2004 Core promoter elements of eukaryotic genes have a highly distinctive mechanical property Nucl. Acids Res. 32 5834-40
    • (2004) Nucl. Acids Res. , vol.32 , Issue.19 , pp. 5834-5840
    • Fukue, Y.1    Sumida, N.2    Nishikawa, J.I.3    Ohyama, T.4
  • 12
    • 22444448187 scopus 로고    scopus 로고
    • Core promoter elements of eukaryotic genes have a highly distinctive mechanical property
    • Fukue Y, Sumida N, Tanase J I and Ohyama T 2005 Core promoter elements of eukaryotic genes have a highly distinctive mechanical property Nucl. Acids Res. 33 3821-7
    • (2005) Nucl. Acids Res. , vol.33 , Issue.12 , pp. 3821-3827
    • Fukue, Y.1    Sumida, N.2    Tanase, J.I.3    Ohyama, T.4
  • 13
    • 22844445585 scopus 로고    scopus 로고
    • Large-scale structural analysis of the core promoter in mammalian and plant genomes
    • Florquin K, Saeys Y, Degroeve S, Rouze P and Peer Y V 2005 Large-scale structural analysis of the core promoter in mammalian and plant genomes Nucl. Acids Res. 33 4255-64
    • (2005) Nucl. Acids Res. , vol.33 , Issue.13 , pp. 4255-4264
    • Florquin, K.1    Saeys, Y.2    Degroeve, S.3    Rouze, P.4    Peer, Y.V.5
  • 14
    • 20344396385 scopus 로고    scopus 로고
    • Structural properties of promoters: Similarities and differences between prokaryotes and eukaryotes
    • Kanhere A and Bansal M 2005 Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes Nucl. Acids Res. 33 3165-75
    • (2005) Nucl. Acids Res. , vol.33 , Issue.10 , pp. 3165-3175
    • Kanhere, A.1    Bansal, M.2
  • 15
    • 34250775905 scopus 로고    scopus 로고
    • The pattern and evolution of yeast promoter bendability
    • Tirosh I, Berman J and Barkai N 2007 The pattern and evolution of yeast promoter bendability Trends Genet. 23 318-21
    • (2007) Trends Genet. , vol.23 , Issue.7 , pp. 318-321
    • Tirosh, I.1    Berman, J.2    Barkai, N.3
  • 17
    • 42449162398 scopus 로고    scopus 로고
    • Structural property of regulatory elements in human promoters
    • Cao X Q, Zeng J and Yan H 2008 Structural property of regulatory elements in human promoters Phys. Rev. E 77 041908
    • (2008) Phys. Rev. , vol.77 , Issue.4 , pp. 041908
    • Cao, X.Q.1    Zeng, J.2    Yan, H.3
  • 19
    • 0029127570 scopus 로고
    • DNA bending is an important component of site-specific recognition by the TATA binding protein
    • Starr D B, Hoopes B C and Hawley D K 1995 DNA bending is an important component of site-specific recognition by the TATA binding protein J. Mol. Biol. 250 434-46
    • (1995) J. Mol. Biol. , vol.250 , Issue.4 , pp. 434-446
    • Starr, D.B.1    Hoopes, B.C.2    Hawley, D.K.3
  • 20
    • 0030581147 scopus 로고    scopus 로고
    • Localized DNA flexibility contributes to target site selection by DNA-bending proteins
    • Grove A, Galeone A, Mayol L and E G P 1996 Localized DNA flexibility contributes to target site selection by DNA-bending proteins J. Mol. Biol. 260 120-5
    • (1996) J. Mol. Biol. , vol.260 , Issue.2 , pp. 120-125
    • Grove, A.1    Galeone, A.2    Mayol, L.3    E, G.P.4
  • 22
    • 0027261235 scopus 로고
    • Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae
    • Shirahige K, Iwasaki T, Rashid M B, Ogasawara N and Yoshikawa H 1993 Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae Mol. Cell. Biol. 13 5043-56
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 5043-5056
    • Shirahige, K.1    Iwasaki, T.2    Rashid, M.B.3    Ogasawara, N.4    Yoshikawa, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.