The Arabidopsis thaliana STYLISH1 protein acts as a transcriptional activator regulating auxin biosynthesis

Plant Cell

Volumn 22, Issue 2, 2010, Pages 349-363

  Magnus Eklund, D ^a   Ståldal, Veronika ^a   Valsecchi, Isabel ^a   Cierlik, Izabela ^a   Eriksson, Caitriona ^a   Hiratsu, Keiichiro ^b,d   Ohme Takagi, Masaru ^b   Sundström, Jens F ^a   Thelander, Mattias ^a   Ezcurra, Inés ^c   Sundberg, Eva ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^c ALBANOVA UNIVERSITY CENTER   (Sweden)

^d NATIONAL DEFENSE ACADEMY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; TRACHEOPHYTA;

EID: 77950345640     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.108.064816     Document Type: Article

References (57)

1. Abel, S., Nguyen, M.S., and Theologis, A. (1995). The PS-IAA4/5-like family of early auxin-inducible mRNAs in Arabidopsis thaliana. J. Mol. Biol. 251: 533-549.
2. Bailey, T.L., and Elkan, C. (1994). Fitting a mixture model by expec- tation maximization to discover motifs in biopolymers. In Proceedings of the Second International Conference on Intelligent Systems forMolecular Biology (Menlo Park, CA: AAAI Press), pp. 28-36
3. Ballas, N., Wong, L.M., and Theologis, A. (1993). Identification of the auxin-responsive element, AuxRE, in the primary indoleacetic acid- inducible gene, PS-IAA4/5, of pea (Pisum sativum). J. Mol. Biol. 233: 580-596.
4. Benková, E., Michniewicz, M., Sauer, M., Teichmann, T., Seifertova ́, D., Jürgens, G., and Friml, J. (2003). Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 115: 591-602.
5. Bracha-Drori, K., Shichrur, K., Katz, A., Oliva, M., Angelovici, R., Yalovsky, S., and Ohad, N. (2004). Detection of protein-protein interactions in plants using bimolecular fluorescence complementation. Plant J. 40: 419-427.
6. Brown, R.S. (2005). Zinc finger proteins: Getting a grip on RNA. Curr. Opin. Struct. Biol. 15: 94-98.
7. Cheng, Y., Dai, X., and Zhao, Y. (2006). Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis. Genes Dev. 20: 1790-1799.
8. Cheng, Y., Dai, X., and Zhao, Y. (2007). Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis. Plant Cell 19: 2430-2439.
9. Davis, S.J., and Vierstra, R.D. (1996). Soluble derivatives of green fluorescent protein (GFP) for use in Arabidopsis thaliana. Weeds World 3: 43-48.
10. Dobson, C.J., and Allinson, S.L. (2006). The phosphate activity of mammalian polynucleotide kinase takes precedence over its kinase activity in repair of single strand break. Nucleic Acids Res. 34: 2230-2237.
11. Edqvist, J., Ronnberg, E., Rosenquist, S., Blomqvist, K., Viitanen, L., Salminen, T.A., Nylund, M., Tuuf, J., and Mattjus, P. (2004). Plants express a lipid transfer protein with high similarity to mammalian sterol carrier protein-2. J. Biol. Chem. 279: 53544-53553.
12. Fridborg, I., Kuusk, S., Moritz, T., and Sundberg, E. (1999). The Arabidopsis dwarf mutant shi exhibits reduced gibberellin responses conferred by overexpression of a new putative zinc finger protein. Plant Cell 11: 1019-1031.
13. Fridborg, I., Kuusk, S., Robertson, M., and Sundberg, E. (2001). The Arabidopsis protein SHI represses gibberellin responses in Arabidopsis and barley. Plant Physiol. 127: 937-948.
14. Friml, J., Vieten, A., Sauer, M., Weijers, D., Schwarz, H., Hamann, T., Offringa, R., and Jürgens, G. (2003). Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 426: 147-153.
15. Friml, J., Wisniewska, J., Benkova ́, E., Mendgen, K., and Palme, K. (2002). Lateral relocation of auxin efflux regulator PIN3 mediates tropism in Arabidopsis. Nature 415: 806-809.
16. Gamsjaeger, R., Liew, C.K., Loughlin, F.E., Crossley, M., and Mackay, J.P. (2007). Sticky fingers: Zinc-fingers as protein-recognition motifs. Trends Biochem. Sci. 32: 63-70.
17. Gietz, R.D., and Woods, R.A. (2002). Transformation of yeast by the LiAc/SS carrier DNA/PEG method. Methods Enzymol. 350: 87-96
18. Hall, T.M. (2005). Multiple modes of RNA recognition by zinc finger proteins. Curr. Opin. Struct. Biol. 15: 367-373.
19. Harper, J.W., Adami, G.R., Wei, N., Keyomarsi, K., and Elledge, S.J. (1993). The p21 Cdk-interacting protein Cip1 is a potent inhibitor of G1 cyclin-dependent kinases. Cell 75: 805-816.
20. Heisler, M.G., Ohno, C., Das, P., Sieber, P., Reddy, G.V., Long, J.A., and Meyerowitz, E.M. (2005). Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem. Curr. Biol. 15: 1899-1911
21. Hiratsu, K., Matsui, K., Koyama, T., and Ohme-Takagi, M. (2003). Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J. 34: 733-739.
22. Ito, T., Takahashi, N., Shimura, Y., and Okada, K. (1997). A serine/ threonine protein kinase gene isolated by an in vivo binding procedure using the Arabidopsis floral homeotic gene product, AGAMOUS. Plant Cell Physiol. 38: 248-258.
23. James, P., Halladay, J., and Craig, E.A. (1996). Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144: 1425-1436.
24. Jefferson, R.A. (1987). Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol. Biol. Rep. 5: 387-405
25. Klug, A. (1999). Zinc finger peptides for the regulation of gene expression. J. Mol. Biol. 293: 215-218.
26. Kuusk, S., Sohlberg, J.J., Eklund, D.M., and Sundberg, E. (2006). Functionally redundant SHI family genes regulate Arabidopsis gynoecium development in a dose-dependent manner. Plant J. 47: 99-111.
27. Kuusk, S., Sohlberg, J.J., Long, J.A., Fridborg, I., and Sundberg, E. (2002). STY1 and STY2 promote the formation of apical tissues during Arabidopsis gynoecium development. Development 129: 4707-4717.
28. Laity, J.H., Lee, B.M., and Wright, P.E. (2001). Zinc finger proteins: New insights into structural and functional diversity. Curr. Opin. Struct. Biol. 11: 39-46.
29. Ljung, K., Hull, A.K., Celenza, J., Yamada, M., Estelle, M., Normanly, J., and Sandberg, G. (2005). Sites and regulation of auxin biosynthesis in Arabidopsis roots. Plant Cell 17: 1090-1105.
30. Marchant, A., Bhalerao, R., Casimiro, I., Eklöf, J., Casero, P.J., Bennett, M., and Sandberg, G. (2002). AUX1 promotes lateral root formation by facilitating indole-3-acetic acid distribution between sink and source tissues in the Arabidopsis seedling. Plant Cell 14: 589-597.
31. Matthews, J.M., and Sunde, M. (2002). Zinc fingers-Folds for many occasions. IUBMB Life 54: 351-355.
32. Mattsson, J., Sung, Z.R., and Berleth, T. (1999). Responses of plant vascular systems to auxin transport inhibition. Development 126: 2979-2991.
33. Meijer, A.H., Ouwerkerk, P.B., and Hoge, J.H. (1998). Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast. Yeast 14: 1407-1415.
34. Mitchell, P.J., and Tijan, R. (1989). Transcriptional regulation in mam- malian cells by sequence-specific DNA binding proteins. Science 245: 371-378.
35. Nakano, T., Suzuki, K., Fujimura, T., and Shinshi, H. (2006). Genome- wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol. 140: 411-432.
36. Nemhauser, J.L., Feldman, L.J., and Zambryski, C. (2000). Auxin and ETTIN in Arabidopsis gynoecium morphogenesis. Development 127: 3877-3888.
37. Ouyang, J., Shao, X., and Li, J. (2000). Indole-3-glycerol phosphate, a branchpoint of indole-3-acetic acid biosynthesis from the tryptophan biosynthetic pathway in Arabidopsis thaliana. Plant J. 24: 327-333.
38. Parraga, G., Horvath, S.J., Eisen, A., Taylor, W.E., Hood, L., Young, E.T., and Klevit, R.E. (1988). Zinc-dependent structure of a single- finger domain of yeast ADR1. Science 241: 1489-1492.
39. Pré, M., Atallah, M., Champion, A., De Vos, M., Pieterse, C.M., and Memelink, J. (2008). The AP2/ERF domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant de- fense. Plant Physiol. 147: 1347-1357.
40. Reinhardt, D., Mandel, T., and Kuhlemeier, C. (2000). Auxin regulates the initiation and radial position of plant lateral organs. Plant Cell 12: 507-518.
41. Reinhardt, D., Pesce, E.R., Stieger, P., Mandel, T., Baltensperger, K., Bennett, M., Traas, J., Friml, J., and Kuhlemeier, C. (2003). Regulation of phyllotaxis by polar auxin transport. Nature 426: 255-260.
42. Sabatini, S., Beis, D., Wolkenfelt, H., Murfett, J., Guilfoyle, T., Malamy, J., Benfey, P., Leyser, O., Bechtold, N., Weisbeek, P., and Scheres, B. (1999). An auxin-dependent distal organizer of pattern an polarity in the Arabidopsis root. Cell 99: 463-472
43. Scarpella, E., Marcos, D., Friml, J., and Berleth, T. (2006). Control of leaf vascular patterning by polar auxin transport. Genes Dev. 20: 1015-1027.
44. Schaefer, D., Zryd, J.P., Knight, C.D., and Cove, D.J. (1991). Stable transformation of the moss Physcomitrella patens. Mol. Gen. Genet. 226: 418-424.
45. Silverstein, K.A., Graham, M.A., Paape, T.D., and VandenBosch, K. A. (2005). Genome organization of more than 300 defensin-like genes in Arabidopsis. Plant Physiol. 138: 600-610.
46. Sohlberg, J.J., Myrenas, M., Kuusk, S., Lagerkrantz, U., Kowalczyk, M., Sandberg, G., and Sundberg, E. (2006). STY1 regulates auxin homeostasis and affects apical-basal patterning of the Arabidopsis gynoecium. Plant J. 47: 112-123.
47. Staldal, V., Sohlberg, J.J., Eklund, D.M., Ljung, K., and Sundberg, E. (2008). Auxin can act independently of CRC, LUG, SEU, SPT and STY1 in style development but not apical-basal patterning of the Arabidopsis gynoecium. New Phytol. 180: 798-808.
48. Staswick, P.E., Serban, B., Rowe, M., Tiryaki, I., Maldonado, M.T., Maldonado, M.C., and Suza, W. (2005). Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid. Plant Cell 17: 616-627.
49. Stone, S.L., Braybrook, S.A., Paula, S.L., Kwong, L.W., Meuser, J., Pelletier, J., Hsieh, T.-F., Fischer, R.L., Goldberg, R.B., and Harada, J.J. (2008). Arabidopsis LEAFY COTYLEDON2 induces mat- uration traits and auxin activity: Implications for somatic embryogenesis. Proc. Natl. Acad. Sci. USA 105: 3151-3156.
50. Sundström, J.F., Nakayama, N., Glimelius, K., and Irish, V.F. (2006). Direct regulation of the floral homeotic APETALA1 gene by APETALA3 and PISTILLATA in Arabidopsis. Plant J. 46: 593-600.
51. Triezenberg, S.J. (1995). Structure and function of transcriptional activation domains. Curr. Opin. Genet. Dev. 5: 190-196
52. van der Fits, L., and Memelink, J. (2000). ORCA3, a jasmonate- responsive transcriptional regulator of plant primary and secondary metabolism. Science 289: 295-297.
53. Vom Endt, D., Soares e Silva, M., Kijne, J.W., Pasquali, G., and Memelink, J. (2007). Identification of a bipartite jasmonate-responsive STY1 Directly Activates Indole-3-Acetic Acid Biosynthesis 363 promoter element in the Catharanthus roseus ORCA3 transcription factor gene that interacts specifically with AT-Hook DNA-binding pro- teins. Plant Physiol. 144: 1680-1689.
54. Went, F.W. (1974). Reflections and speculations. Annu. Rev. Plant Physiol. 25: 1-26.
55. Woodward, A.W., and Bartel, B. (2005). Auxin: Regulation, action, and interaction. Ann. Bot. (Lond.) 95: 707-735.
56. Zhao, Y., Christensen, S.K., Fankhauser, C., Cashman, J.J., Cohen, J.D., Weigel, D., and Chory, J. (2001). A role for flavin monooxygenases in auxin biosynthesis. Science 291: 306-309.
57. Zhao, Y., Hull, A.K., Gupta, N.R., Goss, K.A., Alonso, J., Ecker, J.R., Normanly, J., Chory, J., and Celenza, J.L. (2002). Trp-dependent auxin biosynthesis in Arabidopsis: Involvement of cytochrome P450s CYP79B2 and CYP79B3. Genes Dev. 16: 3100-3112.