Intraspecific variation in gene expression under prolonged drought in Piriqueta hybrids and their parental taxa

Plant Science

Volumn 178, Issue 5, 2010, Pages 429-439

  Machado, Heather E ^a   Cruzan, Mitchell B ^a  

^a PORTLAND STATE UNIVERSITY   (United States)

Author keywords

Drought; Gene expression; Heterologous hybridization; Hybrid; Transgressive

Indexed keywords

GLYCINE MAX; PIRIQUETA; PIRIQUETA CISTOIDES;

EID: 77950341670     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2010.02.009     Document Type: Article

References (82)

1. Bijlsma R., and Loeschcke V. Environmental stress, adaptation and evolution: an overview. J. Evol. Biol. 18 (2005) 744-749
2. Schluter D. Ecology of Adaptive Radiation. Oxford Series in Ecology and Evolution (2002), Oxford University Press, New York
3. Stebbins G.L. Variation and Evolution in Plants (1950), Columbia University Press, New York
4. Boyer J.S. Plant productivity and environment. Science 218 (1982) 443-448
5. Lambers H., Lambers H., and Pons T. Plant Physiological Ecology (1998), Springer-Verlag, New York
6. Nobel P. Physiochemical and Environmental Plant Physiology (2005), Academic Press, New York
7. Bray E.A. Molecular responses to water-deficit. J. Plant Physiol. 103 (1993) 1035-1040
8. Sandquist D.R., and Ehleringer J.R. Population- and family-level variation of brittlebush (Encelia farinosa, Asteraceae) pubescence: its relation to drought and implications for selection in variable environments. Am. J. Bot. 90 (2003) 1481-1486
9. Gibson A.C. Photosynthetic organs of desert plants. BioScience 48 (1998) 911-920
10. Picotte J.J., Rosenthal D.M., Rhode J.M., and Cruzan M.B. Plastic responses to temporal variation in moisture availability: consequences for water use efficiency and plant performance. Oecologia 153 (2007) 821-832
11. Schulze E.D., Robichaux R.H., Grace J., Rundel P.W., and Ehleringer J.R. Plant water balance. BioScience 37 (1987) 30-37
12. Flexas J., Bota J., Cifre J., Escalona J.M., Galmes J., Gulias J., Lefi E.K., Martinez-Canellas S.F., Moreno M.T., Ribas-Carbo M., Riera D., Sampol B., and Medrano H. Understanding down-regulation of photosynthesis under water stress: future prospects and searching for physiological tools for irrigation management. Ann. Appl. Biol. 144 (2004) 273-283
13. Milbau A., Scheerlinck L., Reheul D., De Cauwer B., and Nijs I. Ecophysiological and morphological parameters related to survival in grass species exposed to an extreme climatic event. Physiol. Plant. 125 (2005) 500-512
14. Shinozaki K., and Yamaguchi-Shinozaki K. Gene expression and signal transduction in water-stress response. Plant Physiol. 115 (1997) 327-334
15. Wang W.X., Vinocur B., and Altman A. Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance. Planta 218 (2003) 1-14
16. Feder M.E., and Walser J.C. The biological limitations of transcriptomics in elucidating stress and stress response. J. Evol. Biol. 18 (2005) 901-910
17. Zhou J.L., Wang X.F., Jiao Y.L., Qin Y.H., Liu X.G., He K., Chen C., Ma L.G., Wang J., Xiong L.Z., Zhang Q.F., Fan L.M., and Deng X.W. Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle. Plant Mol. Biol. 63 (2007) 591-608
18. Mohammadi M., Kav N.N.V., and Deyholos M.K. Transcriptional profiling of hexaploid wheat (Triticum aestivum L.) roots identifies novel, dehydration-responsive genes. Plant Cell Environ. 30 (2007) 630-645
19. Xue G.P., McIntyre C.L., Chapman S., Bower N.I., Way H., Reverter A., Clarke B., and Shorter R. Differential gene expression of wheat progeny with contrasting levels of transpiration efficiency. Plant Mol. Biol. 61 (2006) 863-881
20. Andjelkovic V., and Thompson R. Changes in gene expression in maize kernel in response to water and salt stress. Plant Cell Rep. 25 (2006) 71-79
21. Kawaguchi R., Girke T., Bray E.A., and Bailey-Serres J. Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana. Plant J. 38 (2004) 823-839
22. Seki M., Narusaka M., Abe H., Kasuga M., Yamaguchi-Shinozaki K., Carninci P., Hayashizaki Y., and Shinozaki K. Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell. 13 (2001) 61-72
23. Swindell W.R. The association among gene expression responses to nine abiotic stress treatments in Arabidopsis thaliana. Genetics 174 (2006) 1811-1824
24. Chen D., Liang M.X., DeWald D., Weimer B., Peel M.D., Bugbee B., Michaelson J., Davis E., and Wu Y. Identification of dehydration responsive genes from two non-nodulated alfalfa cultivars using Medicago truncatula microarrays. Acta Physiol. Plant. 30 (2008) 183-199
25. Geng H.W., Shi L., Li W., Zhang B., Chu C.C., Li H.J., and Zhang G.F. Gene expression of jojoba (Simmondsia chinensis) leaves exposed to drying. Environ. Exp. Bot. 63 (2008) 137-146
26. Lai Z., Gross B.L., Zou Y., Andrews J., and Rieseberg L.H. Microarray analysis reveals differential gene expression in hybrid sunflower species. Mol. Ecol. 15 (2006) 1213-1227
27. Micheletto S., Rodriguez-Uribe L., Hernandez R., Richins R.D., Curry J., and O'Connell M.A. Comparative transcript profiling in roots of Phaseolus acutifolius and P. vulgaris under water deficit stress. Plant Sci. 173 (2007) 510-520
28. Reddy P.C.O., Sairanganayakulu G., Thippeswamy M., Reddy P.S., Reddy M.K., and Sudhakar C. Identification of stress-induced genes from the drought tolerant semi-arid legume crop horsegram (Macrotyloma uniflorum (Lam.) Verdc.) through analysis of subtracted expressed sequence tags. Plant Sci. 175 (2008) 372-384
29. Renn S.C.P., Aubin-Horth N., and Hofmann H.A. Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray. BMC Genomics 5 (2004)
30. Bar-Or C., Czosnek H., and Koltai H. Cross-species microarray hybridizations: a developing tool for studying species diversity. Trends Genet. 23 (2007) 200-207
31. Buckley B.A. Comparative environmental genomics in non-model species: using heterologous hybridization to DNA-based microarrays. J. Exp. Biol. 210 (2007) 1602-1606
32. Kassahn K.S. Microarrays for comparative and ecological genomics: beyond single-species applications of array technologies. J. Fish Biol. 72 (2008) 2407-2434
33. Wikstrom N., Savolainen V., and Chase M.W. Evolution of the angiosperms: calibrating the family tree. Proc. R. Soc. Lond. [Biol.] 268 (2001) 2211-2220
34. Maskas S.D., and Cruzan M.B. Patterns of intraspecific diversification in the Piriqueta caroliniana complex in southeastern North America and the Bahamas. Evolution 54 (2000) 815-827
35. J. Picotte, Leaf morphological responses to environmental change in the Piriqueta caroliniana complex, M. Sc., Portland State University, 2006.
36. Arbo M.M. Turneraceae-Parte I Piriqueta (1995), The New York Botanical Garden, Bronx, New York
37. Ornduff R., and Perry J. Reproductive biology of Piriqueta caroliniana (Turneraceae). Rhodora 66 (1964) 100-109
38. Martin L.J., and Cruzan M.B. Patterns of hybridization in the Piriqueta caroliniana complex in central Florida: evidence for an expanding hybrid zone. Evolution 53 (1999) 1037-1049
39. Cruzan M.B., and Rhode J.M. Experimental analysis of adaptive landscape topographies. Plant Adaptation: Molecular Genetics and Ecology (2004), National Research Council of Canada, Vancouver, BC pp. 61-69
40. Rhode J.M., and Cruzan M.B. Contributions of heterosis and epistasis to hybrid fitness. Am. Nat. 166 (2005) E124-E139
41. Abrahamson W., and Hartnett D. Pine flatwoods and dry prairies. Ecosystems of Florida (1990), University of Central Florida Press, Orlando
42. Cruzan M.B. Patterns of introgression across an expanding hybrid zone: analysing historical patterns of gene flow using nonequilibrium approaches. New Phytol. 167 (2005) 267-278
43. Arnold M.L., and Hodges S.A. Are natural hybrids fit or unfit relative to their parents. Trends Ecol. Evolut. 10 (1995) 67-71
44. Baack E.J., and Rieseberg L.H. A genomic view of introgression and hybrid speciation. Curr. Opin. Genet. Dev. 17 (2007) 513-518
45. Dobzhansky T. Studies on hybrid sterility. II. Localization of sterility factors in Drosophila pseudoobscura hybrids. Genetics 21 (1936) 113-135
46. Muller H.J. Isolating mechanisms, evolution, and temperature. Biol. Symp. 6 (1942) 71-125
47. Orr H. The population genetics of speciation: the evolution of hybrid incompatibilities. Genetics 139 (1995) 1803-1813
48. Rieseberg L.H. Hybrid origins of plant species. Annu. Rev. Ecol. Syst. 28 (1997) 359-389
49. deVicente M.C., and Tanksley S.D. Qtl analysis of transgressive segregation in an interspecific tomato cross. Genetics 134 (1993) 585-596
50. Landry C.R., Hartl D.L., and Ranz J.M. Genome clashes in hybrids: insights from gene expression. Heredity 99 (2007) 483-493
51. Lexer C., Welch M.E., Raymond O., and Rieseberg L.H. The origin of ecological divergence in Helianthus paradoxus (Asteraceae): selection on transgressive characters in a novel hybrid habitat. Evolution 57 (2003) 1989-2000
52. Rieseberg L.H., Archer M.A., and Wayne R.K. Transgressive segregation, adaptation and speciation. Heredity 83 (1999) 363-372
53. Gomes L.I., Silva R.L.A., Stolf B.S., Cristo E.B., Hirata R., Soares F.A., Reis L.F.L., Neves E.J., and Carvalho A.F. Comparative analysis of amplified and nonamplified RNA for hybridization in cDNA microarray. Anal. Biochem. 321 (2003) 244-251
54. Wang E., Miller L.D., Ohnmacht G.A., Liu E.T., and Marincola F.M. High-fidelity mRNA amplification for gene profiling. Nat. Biotechnol. 18 (2000) 457-459
55. Kerr M.K., and Churchill G.A. Statistical design and the analysis of gene expression microarray data. Genet. Res. 77 (2001) 123-128
56. Vodkin L.O., Khanna A., Shealy R., Clough S.J., Gonzalez D.O., Philip R., Zabala G., Thibaud-Nissen F., Sidarous M., Stromvik M.V., Shoop E., Schmidt C., Retzel E., Erpelding J., Shoemaker R.C., Rodriguez-Huete A.M., Polacco J.C., Coryell V., Keim P., Gong G., Liu L., Pardinas J., and Schweitzer P. Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant. BMC Genomics 5 (2004) 73
57. SAS. SAS/STAT User's Guide, Version 6 (2002), SAS Institute, Cary, NC
58. Quackenbush J. Microarray data normalization and transformation. Nat. Genet. 32 (2002) 496-501
59. Storey J.D., and Tibshirani R. Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. U.S.A. 100 (2003) 9440-9445
60. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J.H., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
61. Wang E. RNA amplification for successful gene profiling analysis. J. Transl. Med. 3 (2005)
62. Gilad Y., Rifkin S.A., Bertone P., Gerstein M., and White K.P. Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Res. 15 (2005) 674-680
63. Voelckel C., Heenan P.B., Janssen B., Reichelt M., Ford K., Hofmann R., and Lockhart P.J. Transcriptional and biochemical signatures of divergence in natural populations of two species of New Zealand alpine Pachycladon. Mol. Ecol. 17 (2008) 4740-4753
64. Watkinson J.I., Hendricks L., Sioson A.A., Vasquez-Robinet C., Stromberg V., Heath L.S., Schuler M., Bohnert H.J., Bonierbale M., and Grene R. Accessions of Solanum tuberosum ssp andigena show differences in photosynthetic recovery after drought stress as reflected in gene expression profiles. Plant Sci. 171 (2006) 745-758
65. Cramer G.R., Ergul A., Grimplet J., Tillett R.L., Tattersall E.A.R., Bohlman M.C., Vincent D., Sonderegger J., Evans J., Osborne C., Quilici D., Schlauch K.A., Schooley D.A., and Cushman J.C. Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles. Funct. Integr. Genomics 7 (2007) 111-134
66. Talame V., Ozturk N.Z., Bohnert H.J., and Tuberosa R. Barley transcript profiles under dehydration shock and drought stress treatments: a comparative analysis. J. Exp. Bot. 58 (2007) 229-240
67. Wang J.P.P., and Bughrara S.S. Monitoring of gene expression profiles and identification of candidate genes involved in drought responses in Festuca mairei. Mol. Gen. Genomics 277 (2007) 571-587
68. Bray E.A. Genes commonly regulated by water-deficit stress in Arabidopsis thaliana. J. Exp. Bot. 55 (2004) 2331-2341
69. Schafleitner R., Rosales R.O.G., Gaudin A., Aliaga C.A.A., Martinez G.N., Marca L.R.T., Bolivar L.A., Delgado F.M., Simon R., and Bonierbale M. Capturing candidate drought tolerance traits in two native Andean potato clones by transcription profiling of field grown plants under water stress. Plant Physiol. Biochem. 45 (2007) 673-690
70. Huang D.Q., Wu W.R., Abrams S.R., and Cutler A.J. The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors. J. Exp. Bot. 59 (2008) 2991-3007
71. Ozturk Z.N., Talame V., Deyholos M., Michalowski C.B., Galbraith D.W., Gozukirmizi N., Tuberosa R., and Bohnert H.J. Monitoring large-scale changes in transcript abundance in drought- and salt-stressed barley. Plant Mol. Biol. 48 (2002) 551-573
72. Rampino P., Pataleo S., Gerardi C., Mita G., and Perrotta C. Drought stress response in wheat: physiological and molecular analysis of resistant and sensitive genotypes. Plant Cell Environ. 29 (2006) 2143-2152
73. Nicot N., Hausman J.F., Hoffmann L., and Evers D. Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J. Exp. Bot. 56 (2005) 2907-2914
74. Zhu J.K. Salt and drought stress signal transduction in plants. Annu. Rev. Plant Biol. 53 (2002) 247-273
75. Bell M.A., and Travis M.P. Hybridization, transgressive segregation, genetic covariation, and adaptive radiation. Trends Ecol. Evolut. 20 (2005) 358-361
76. Latta R.G., Gardner K.M., and Johansen-Morris A.D. Hybridization, recombination, and the genetic basis of fitness variation across environments in Avena barbata. Genetica 129 (2007) 167-177
77. Wang J.Q., and Cruzan M.B. Interspecific mating in the Piriqueta caroliniana (Turneraceae) complex: effects of pollen load size and composition. Am. J. Bot. 85 (1998) 1172-1179
78. Ranz J.M., Namgyal K., Gibson G., and Hartl D.L. Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans. Genome Res. 14 (2004) 373-379
79. Picotte J.J., Rhode J.M., and Cruzan M.B. Leaf morphological responses to variation in water availability for plants in the Piriqueta caroliniana complex. Plant Ecol. 200 (2009) 267-275
80. Bakker H., Routier F., Ashikov A., Neumann D., Bosch D., and Gerardy-Schahn R.A. CMP-sialic acid transporter cloned from Arabidopsis thaliana. Carbohydr. Res. 343 (2008) 2148-2152
81. Lee M.H., Min M.K., Lee Y.J., Jin J.B., Shin D.H., Kim D.H., Lee K.H., and Hwang I. ADP-ribosylation factor 1 of arabidopsis plays a critical role in intracellular trafficking and maintenance of endoplasmic reticulum morphology in Arabidopsis. Plant Physiol. 129 (2002) 1507-1520
82. Mane S.P., Robinet C.V., Ulanov A., Schafleitner R., Tincopa L., Gaudin A., Nomberto G., Alvarado C., Solis C., Bolivar L.A., Blas R., Ortega O., Solis J., Panta A., Rivera C., Samolski I., Carbajulca D.H., Bonierbale M., Pati A., Heath L.S., Bohnert H.J., and Grene R. Molecular and physiological adaptation to prolonged drought stress in the leaves of two Andean potato genotypes. Funct. Plant Biol. 35 (2008) 669-688