Geographic patterns of inversion polymorphisms in a wild African rodent, Mastomys erythroleucus

Heredity

Volumn 104, Issue 4, 2010, Pages 378-386

  Dobigny, G ^a   Catalan, J ^b   Gauthier, P ^a   O'brien, P C M ^c   Brouat, C ^a   Ba K ^d   Tatard, C ^a   Ferguson Smith, M A ^c   Duplantier, J M ^a   Granjon, L ^d   Britton Davidian, J ^b  

^a CENTRE DE BIOLOGIE ET DE GESTION DES POPULATIONS   (France)

^b CNRS   (France)

^c Centre for Veterinary Science   (United Kingdom)

^d CIRAD   (France)

Author keywords

Ancestral polymorphism; Chromosome evolution; Lineage sorting; Phylogeography; Zoo FISH

Indexed keywords

CHROMOSOME; GENE FLOW; GEOGRAPHICAL VARIATION; KARYOTYPE; PHYLOGEOGRAPHY; POLYMORPHISM; RECOMBINATION; RODENT; SAVANNA; WILD POPULATION;

WEST AFRICA;

MASTOMYS; MASTOMYS ERYTHROLEUCUS; RATTUS; RODENTIA;

EID: 77950090077     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2009.119     Document Type: Article

References (51)

1. Alvarez G, Zapata C (1997). Conditions for protected inversion polymorphism under supergene selection. Genetics 146: 717-722.
2. Anton E, Vidal F, Egozcue J, Blanco J (2006). Genetic reproductive risk in inversion carriers. Fertil Steril 85: 661-666.
3. Asthana S, Schmidt S, Sunyaev S (2005). A limited role for balancing selection. Trends Genet 21: 30-32.
4. Ayala FJ, Coluzzi M (2005). Chromosome speciation: humans, Drosophila, mosquitoes. Proc Natl Acad Sci USA 102: 6535-6542.
5. Belkhir K, Borsa P, Raufaste N, Bonhomme F (1996-2004). GENETIX 4.05 logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II: Montpellier, France.
6. Bonvicino C, D'Andrea P, Borodin P (2001). Pericentric inversion in natural populations of Oligoryzomys nigripes (Rodentia, Sigmodontinae). Genome 44: 791-796.
7. Britton-Davidian J, Catalan J, Granjon L, Duplantier JM (1995). Chromosomal phylogeny and evolution in the genus Mastomys (Mammalia, Rodentia). J Mammal 76: 248-262.
8. Brouat C, Tatard C, Bâ K, Cosson JF, Dobigny G, Fichet-Calvet E et al. (2009). Phylogeography of the Guinea multimammate mouse (Mastomys erythroleucus): a case study for Sahelian species in West Africa. J Biogeogr (doi:10.1111/j.1365- 2699.2009.02184x).
9. Butlin R (2005). Recombination and speciation. Mol Ecol 14: 2621-2635.
10. Caceres M, Barbadilla A, Ruiz A (1999). Recombination rate predicts inversion size in Diptera. Genetics 153: 251-259.
11. Coluzzi M, Sabatini A, Della Torre A, Di Deco M, Tetrarca V (2002). A polytene chromosome analysis of the Anopheles gambiae species complex. Science 298: 1415-1418.
12. Corander J, Marttinen P (2006). Bayesian identification of admixture events using multi-locus molecular markers. Mol Ecol 15: 2833-2843.
13. De Menocal P (2004). African climate change and faunal evolution during the Pliocene-Pleistocene. Earth Planet Sci Lett 220: 3-24.
14. Dobzhansky T (1948). Genetics of natural populations. XVIII. Experiments on chromosomes of Drosophila pseudoobscura from different geographic regions. Genetics 33: 588-602.
15. Dowler RC (1989). Cytogenetic studies of three chromosomal races of pocket gophers (Geomys bursarius complex) at hybrid zones. J Mammal 70: 253-266.
16. Evans EP, Breckon G, Ford CE (1963). An air-drying method for meiotic preparations from mammalian testes. Cytogenetics 3: 289-294.
17. Fagundes V, Yonenaga-Yassuda Y (1998). Evolutionary conservation of whole homeologous chromosome arms in the Akodont rodents Bolomys and Akodon (Muridae, Sigmodontinae): maintenance of interstitial telomeric segments (ITBs) in recent event of centric fusion. Chromosome Res 6: 643-648.
18. Feder J, Xie X, Rull J, Velez S, Forbes A, Leung B et al. (2005). Mayr, Dobzhansky, and Bush and the complexities of sympatric speciation in Rhagoletis. Proc Natl Acad Sci USA 102: 6573-6580.
19. Gabriel-Robez O, Ratomponirina C, Croquette M, Couturier J,Rumpler Y (1988). Synaptonemal complexes in a subfertile man with a pericentric inversion in chromosome 21. Cytogenet Cell Genet 48: 84-87.
20. Gilchrist GW, Huey RB, Balanya J, Pascual M, Serra L (2004). A time series of evolution in action: a latitudinal cline in wing size in South American Drosophila subobscura. Evolution 58: 768-780.
21. Granjon L, Duplantier JM, Catalan J, Britton-Davidian J (1997). Systematics of the genus Mastomys (Thomas, 1915) (Rodentia, Muridae): a review. Belg J Zool 127: 7-18.
22. Hale DW (1986). Heterosynapsis and suppression of chiasmata within heterozygous pericentric inversions of the Sitka deer mouse. Chromosoma 94: 425-436.
23. Hoffman AA, Sgro CM, Weeks AR (2004). Chromosomal inversion polymorphisms and adaptation. Trends Ecol Evol 19: 483-488.
24. Jaarola M, Martin RH, Ashley T (1998). Direct evidence for suppression of recombination within two pericentric inversions in human: a new sperm-FISH technique. Am J Hum Genet 63: 218-224.
25. Kidd J, Cooper G, Donahue W, Hayden H, Sampas N, Graves T et al. (2008). Mapping and sequencing of structural variation from eight human genomes. Nature 453: 56-64.
26. Kirkpatrick M, Barton N 2006)). Chromosome inversions, local adaptation and speciation. Genetics 173: 419-434.
27. Lecompte E, Fichet-Calvet E, Daffis S, Koulema K, Sylla O, Kourouma F et al. (2006). Mastomys natalensis and Lassa fever, West Africa. Emerg Infect Dis 12: 178-183.
28. Machado C, Kliman R, Markert J, Hey J (2002). Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives. Mol Biol Evol 19: 472-488.
29. McAllister BF, Sheeley SL, Mena PA, Evans AL, Schlö tterer C (2008). Clinal distribution of a chromosomal rearrangement: a precursor to chromosomal speciation? Evolution 62: 1852-1865.
30. Mouline K, Granjon L, Galan M, Tatard C, Abdoullaye D, Ag Atteyine S et al. (2008). Phylogeography of Sahelian rodent species Mastomys huberti: a Plio-Pleistocene story of emergence and colonization of humid habitats. Mol Ecol 17: 1036-1053.
31. Navarro A, Gazave E (2005). Inversions with classical style and trendy lines. Nat Genet 37: 115-116.
32. Navarro A, Ruiz A (1997). On the fertility effects of pericentric inversions. Genetics 147: 931-933.
33. Neiman M, Linksvayer T (2006). The conversion of variance and the evolutionary potential of restricted recombination. Heredity 96: 111-121.
34. Noor M, Grams K, Bertucci L, Reiland J (2001). Chromosomal inversions and the reproductive isolation of species. Proc Natl Acad Sci USA 98: 12084-12088.
35. Paresque R, de Jesus Silva M, Yonenaga-Yassuda Y, Fagundes V (2007). Karyological geographic variation of Oligoryzomys nigripes Olfers 1818 (Rodentia, Cricetidae) from Brazil. Genet Mol Biol 30: 43-53.
36. Prevosti A, Ribo G, Serra L, Aguade M, Balana J, Monclus M et al. (1988). Colonization of America by Drosophila subobscura: experiment in natural populations that supports the adaptive role of chromosomal inversion polymorphism. Proc Natl Acad Sci USA 85: 5597-5600.
37. Raymond M, Rousset F (1995). GENEPOP, version 1.2: population genetics software for exact tests and ecumenicism. J Hered 86: 248-249.
38. Rieseberg L (2001). Chromosomal rearrangements and speciation. Trends Ecol Evol 16: 351-358.
39. Seabright M (1971). A rapid banding technique for human chromosome. Lancet 2: 971-972.
40. Shaw D, Coates D, Arnold M, Wilkinson P (1985). Temporal variation in the chromosomal structure of a hybrid zone and its relationship to karyotypic repatterning. Heredity 55: 293-306.
41. Stefansson H, Helgason A, Thorleifsson G, Steinthorsdottir V,Masson G, Barnard J et al. (2005). A common inversion under selection in Europeans. Nat Rev Genet 37: 129-137. Telenius H, Carter NP, Bebb CE, Nordenskjöld M, Ponder BA
42. Telenius H, Carter NP, Bebb CE, Nordenskjöld M, Ponder BA,Tunnacliffe A (1992). Degenerate oligonucleotide-primed PCR: a general amplification of target DNA by a single degenerate primer. Genomics 13: 718-725.
43. Van Tuinen P, Mootnick A, Kingswood S, Hale D, Kumamoto A (1999). Complex, compound inversion/translocation polymorphism in an ape: presumptive intermediate stage in the karyotypic evolution of the agile gibbon, Hylobates agilis. Am J Phys Anthrop 110: 129-142.
44. Verhoeven KJF, Simonsen KL, McIntyre LM (2005). Implementing false discovery rate: increasing your power. Oikos 108: 643-647.
45. Volobouev V, Hoffman A, Sicard B, Granjon L (2001). Polymorphism and polytypy for pericentric inversions in 38- chromosome Mastomys (Rodentia, Murinae) and possible taxonomic implications. Cytogenet Cell Genet 92: 237-242.
46. Volobouev V, Aniskin A, Lecompte E, Ducroz JF (2002). Patterns of karyotype evolution in complexes of sibling species within three genera of African murid rodents inferred from the comparison of cytogenetic and molecular data. Cytogenet Genome Res 96: 261-275.
47. Wilson DE, Reeder DAM (2005). Mammal Species of the World: A Taxonomic and Geographic Reference. The Johns Hopkins University Press: Baltimore. Yang F, Alkalaeva EZ, Perelman PL, Pardini AT, Harrison WR
48. O'Brien PC et al. (2003). Reciprocal chromosome painting among human, aardvark and elephant (superorder Afrotheria) reveals the likely eutherian ancestral karyotype. Proc Natl Acad Sci USA 100: 1062-1066.
49. Yosida TH, Tsuchiya K, Moriwaki K (1971a). Frequency of chromosome polymorphism in Rattus rattus collected in Japan. Chromosoma 33: 30-40.
50. Yosida TH, Tsuchiya K, Moriwaki K (1971b). Karyotypic differences of black rats, Rattus rattus, collected in various localities of East and Southeast Asia and Oceania. Chromosoma 33: 252-267.
51. Yosida TH (1976). Frequencies of chromosome polymorphism (pairs no. 1, 9 and 13) in the black rat of Japan. Proc Jap Soc 52: 405-408.