-
1
-
-
34548317146
-
FireDock: Fast interaction refinement in molecular docking
-
Andrusier N, Nussinov R, Wolfson HJ (2007) FireDock: fast interaction refinement in molecular docking. Proteins 69(1): 139-159.
-
(2007)
Proteins
, vol.69
, Issue.1
, pp. 139-159
-
-
Andrusier, N.1
Nussinov, R.2
Wolfson, H.J.3
-
2
-
-
77952670797
-
-
BioInfo3D, Cited 1 Oct 2007
-
BioInfo3D (2007) About PatchDock. http://bioinfo3d. cs. tau. ac. il/PatchDock/patchdock. html. Cited 1 Oct 2007.
-
(2007)
About PatchDock
-
-
-
3
-
-
0034663658
-
Scoring docked conformations generated by rigid-body protein-protein docking
-
Camacho CJ, Gatchell DW, Kimura SR, Vajda S (2000) Scoring docked conformations generated by rigid-body protein-protein docking. Proteins 40(3): 525-537.
-
(2000)
Proteins
, vol.40
, Issue.3
, pp. 525-537
-
-
Camacho, C.J.1
Gatchell, D.W.2
Kimura, S.R.3
Vajda, S.4
-
4
-
-
0026319198
-
Protein-protein recognition analyzed by docking simulation
-
Cherfils J, Duquerroy S, Janin J (1991) Protein-protein recognition analyzed by docking simulation. Proteins 11(4): 271-280.
-
(1991)
Proteins
, vol.11
, Issue.4
, pp. 271-280
-
-
Cherfils, J.1
Duquerroy, S.2
Janin, J.3
-
5
-
-
2942589060
-
On proteins, grids, correlations, and docking
-
Eisenstein M, Katchalski-Katzir E (2004) On proteins, grids, correlations, and docking. C R Biol 327(5): 409-420.
-
(2004)
C R Biol
, vol.327
, Issue.5
, pp. 409-420
-
-
Eisenstein, M.1
Katchalski-Katzir, E.2
-
6
-
-
77952669792
-
-
European Bioinformatics Institute (2002) CAPRI round 2 website,Cited 1 Oct 2007
-
European Bioinformatics Institute (2002) CAPRI round 2 website. http://capri. ebi. ac. uk/round2/round2. html. Cited 1 Oct 2007.
-
-
-
-
7
-
-
34249040810
-
Physics-based methods for studying protein-ligand interactions
-
Huang N, Jacobson MP (2007) Physics-based methods for studying protein-ligand interactions. Curr Opin Drug Discov Devel 10(3): 325-331.
-
(2007)
Curr Opin Drug Discov Devel
, vol.10
, Issue.3
, pp. 325-331
-
-
Huang, N.1
Jacobson, M.P.2
-
8
-
-
21644438254
-
Approaching the CAPRI challenge with an efficient geometry-based docking
-
Inbar Y, Schneidman-Duhovny D, Halperin I, Oron A, Nussinov R, Wolfson HJ (2005) Approaching the CAPRI challenge with an efficient geometry-based docking. Proteins 60(2): 217-223.
-
(2005)
Proteins
, vol.60
, Issue.2
, pp. 217-223
-
-
Inbar, Y.1
Schneidman-Duhovny, D.2
Halperin, I.3
Oron, A.4
Nussinov, R.5
Wolfson, H.J.6
-
9
-
-
0030593488
-
Carbohydrate and protein-based inhibitors of porcine pancreatic alpha-amylase: Structure analysis and comparison of their binding characteristics
-
Machius M, Vertesy L, Huber R, Wiegand G (1996) Carbohydrate and protein-based inhibitors of porcine pancreatic alpha-amylase: structure analysis and comparison of their binding characteristics. J Mol Biol 260(3): 409-421.
-
(1996)
J Mol Biol
, vol.260
, Issue.3
, pp. 409-421
-
-
Machius, M.1
Vertesy, L.2
Huber, R.3
Wiegand, G.4
-
10
-
-
48449092207
-
FireDock: A web server for fast interaction refinement in molecular docking
-
Mashiach E, Schneidman-Duhovny D, Andrusier N, Nussinov R, Wolfson HJ (2008) FireDock: a web server for fast interaction refinement in molecular docking. Nucleic Acids Res 36(Web Server issue): W229-W232.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.Web Server issue
-
-
Mashiach, E.1
Schneidman-Duhovny, D.2
Andrusier, N.3
Nussinov, R.4
Wolfson, H.J.5
-
11
-
-
4444282928
-
A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6
-
Oostenbrink C, Villa A, Mark AE, van Gunsteren WF (2004) A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6. J Comput Chem 25(13): 1656-1676.
-
(2004)
J Comput Chem
, vol.25
, Issue.13
, pp. 1656-1676
-
-
Oostenbrink, C.1
Villa, A.2
Mark, A.E.3
van Gunsteren, W.F.4
-
12
-
-
0038237369
-
Taking geometry to its edge: Fast unbound rigid (and hinge-bent) docking
-
Schneidman-Duhovny D, Inbar Y, Polak V et al (2003) Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking. Proteins 52(1): 107-112.
-
(2003)
Proteins
, vol.52
, Issue.1
, pp. 107-112
-
-
Schneidman-Duhovny, D.1
Inbar, Y.2
Polak, V.3
-
14
-
-
21644463278
-
Geometry-based flexible and symmetric protein docking
-
Schneidman-Duhovny D, Inbar Y, Nussinov R, Wolfson HJ (2005b) Geometry-based flexible and symmetric protein docking. Proteins 60(2): 224-231.
-
(2005)
Proteins
, vol.60
, Issue.2
, pp. 224-231
-
-
Schneidman-Duhovny, D.1
Inbar, Y.2
Nussinov, R.3
Wolfson, H.J.4
-
15
-
-
34047191046
-
QM/MM studies of enzymes
-
Senn HM, Thiel W (2007) QM/MM studies of enzymes. Curr Opin Chem Biol 11(2): 182-187.
-
(2007)
Curr Opin Chem Biol
, vol.11
, Issue.2
, pp. 182-187
-
-
Senn, H.M.1
Thiel, W.2
-
16
-
-
0025785057
-
Protein docking and complementarity
-
Shoichet BK, Kuntz ID (1991) Protein docking and complementarity. J Mol Biol 221(1): 327-346.
-
(1991)
J Mol Biol
, vol.221
, Issue.1
, pp. 327-346
-
-
Shoichet, B.K.1
Kuntz, I.D.2
-
17
-
-
0028410583
-
Detailed ab initio prediction of lysozyme-antibody complex with 1.6 A accuracy
-
Totrov M, Abagyan R (1994) Detailed ab initio prediction of lysozyme-antibody complex with 1. 6 A accuracy. Nat Struct Biol 1(4): 259-263.
-
(1994)
Nat Struct Biol
, vol.1
, Issue.4
, pp. 259-263
-
-
Totrov, M.1
Abagyan, R.2
-
18
-
-
33749260698
-
A critical assessment of docking programs and scoring functions
-
Warren GL, Andrews CW, Capelli AM et al (2006) A critical assessment of docking programs and scoring functions. J Med Chem 49(20): 5912-5931.
-
(2006)
J Med Chem
, vol.49
, Issue.20
, pp. 5912-5931
-
-
Warren, G.L.1
Andrews, C.W.2
Capelli, A.M.3
-
19
-
-
0029933286
-
Prediction of protein complexes using empirical free energy functions
-
Weng Z, Vajda S, Delisi C (1996) Prediction of protein complexes using empirical free energy functions. Protein Sci 5(4): 614-626.
-
(1996)
Protein Sci
, vol.5
, Issue.4
, pp. 614-626
-
-
Weng, Z.1
Vajda, S.2
Delisi, C.3
|