Induction of chromosomal inversion by integration of T-DNA in the rice genome

Journal of Genetics and Genomics

Volumn 37, Issue 3, 2010, Pages 189-196

  Zhu, Chuanfeng ^a   Wu, Jiahe ^a   He, Chaozu ^a  

^a INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

Author keywords

Agrobacterium tumefaciens mediated transformation (ATMT); chromosomal inversion; T DNA

Indexed keywords

DNA;

ARTICLE; CHROMOSOME INVERSION; DNA INTEGRATION; GENE INSERTION; GENE LOCUS; NONHUMAN; PHENOTYPE; PLANT GENOME; RHIZOBIUM RADIOBACTER; RICE;

BASE SEQUENCE; CHROMOSOME INVERSION; DNA, BACTERIAL; DNA, PLANT; GENOME, PLANT; MOLECULAR SEQUENCE DATA; ORYZA SATIVA;

AGROBACTERIUM TUMEFACIENS;

EID: 77949884973     PISSN: 16738527     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1673-8527(09)60037-0     Document Type: Article

References (24)

1. An G., Watson B.D., Stachel S., Gordon M.P., and Nester E.W. New cloning vehicles for transformation of higher plants. EMBO J. 4 (1985) 277-284
2. Bevan M. Binary Agrobacterium vectors for plant transformation. Nucleic Acids Res. 12 (1984) 8711-8721
3. Brunaud V., Balzergue S., Dubreucq B., Aubourg S., Samson F., Chauvin S., Bechtold N., Cruaud C., DeRose R., Pelletier G., Lepiniec L., Caboche M., and Lecharny A. T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites. EMBO Rep. 3 (2002) 1152-1157
4. Caceres M., Ranz J.M., Barbadilla A., Long M., and Ruiz A. Generation of a widespread Drosophila inversion by a transposable element. Science 285 (1999) 415-418
5. Castle L.A., Errampalli D., Atherton T.L., Franzmann L.H., Yoon E.S., and Meinke D.W. Genetic and molecular characterization of embryonic mutants identified following seed transformation in Arabidopsis. Mol. Gen. Genet. 241 (1993) 504-514
6. Clark M.S. Plant Molecular Biology: A Laboratory Manual. (1997), Spinger-Verlog Berlin Heidelberg, New York
7. De Buck S., Jacobs A., Van Montagu M., and Depicker A. The DNA sequences of T-DNA junctions suggest that complex T-DNA loci are formed by a recombination process resembling T-DNA integration. Plant J. 20 (1999) 295-304
8. Dehal P., Predki P., Olsen A.S., Kobayashi A., Folta P., Lucas S., Land M., Terry A., Ecale Zhou C.L., Rash S., Zhang Q., Gordon L., Kim J., Elkin C., Pollard M.J., Richardson P., Rokhsar D., Uberbacher E., Hawkins T., Branscomb E., and Stubbs L. Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution. Science 293 (2001) 104-111
9. Gheysen G., Villarroel R., and Van Montagu M. Illegitimate recombination in plants: a model for T-DNA integration. Genes Dev. 5 (1991) 287-297
10. Hoekema A.P.R., Hirsch P.R., Hooykaas P.J.J., and Schilperoort R.A. A binary plant vector strategy based on separation of vir and T-region of the Agrobacterium tumefaciens Ti plasmid. Nature 303 (1983) 179-180
11. Hoffmann A.A., Sgro C.M., and Weeks A.R. Chromosomal inversion polymorphisms and adaptation. Trends Ecol. Evol. 19 (2004) 482-488
12. Jiang L., Zhang W., Xia Z., Jiang G., Qian Q., Li A., Cheng Z., Zhu L., Mao L., and Zhai W. A paracentric inversion suppresses genetic recombination at the FON3 locus with breakpoints corresponding to sequence gaps on rice chromosome 11L. Mol. Genet. Genomics 277 (2007) 263-272
13. Laufs P., Autran D., and Traas J. A chromosomal paracentric inversion associated with T-DNA integration in Arabidopsis. Plant J. 18 (1999) 131-139
14. Liu Y.G., Mitsukawa N., Oosumi T., and Whittier R.F. Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8 (1995) 457-463
15. Mayerhofer R., Koncz-Kalman Z., Nawrath C., Bakkeren G., Crameri A., Angelis K., Redei G.P., Schell J., Hohn B., and Koncz C. T-DNA integration: a mode of illegitimate recombination in plants. EMBO J. 10 (1991) 697-704
16. Muller A.E., Atkinson R.G., Sandoval R.B., and Jorgensen R.A. Microhomologies between T-DNA ends and target sites often occur in inverted orientation and may be responsible for the high frequency of T-DNA-associated inversions. Plant Cell Rep. 26 (2007) 617-630
17. Nacry P., Camilleri C., Courtial B., Caboche M., and Bouchez D. Major chromosomal rearrangements induced by T-DNA transformation in Arabidopsis. Genetics 149 (1998) 641-650
18. Pansegrau W., Schoumacher F., Hohn B., and Lanka E. Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: analogy to bacterial conjugation. Proc. Natl. Acad. Sci. USA 90 (1993) 11538-11542
19. Sha Y., Li S., Pei Z., Luo L., Tian Y., and He C. Generation and flanking sequence analysis of a rice T-DNA tagged population. Theor. Appl. Genet. 108 (2004) 306-314
20. Takano M., Egawa H., Ikeda J.E., and Wakasa K. The structures of integration sites in transgenic rice. Plant J. 11 (1997) 353-361
21. Tinland B., Schoumacher F., Gloeckler V., Bravo-Angel A.M., and Hohn B. The Agrobacterium tumefaciens virulence D2 protein is responsible for precise integration of T-DNA into the plant genome. EMBO J. 14 (1995) 3585-3595
22. Tzfira T., Li J.X., Lacroix B., and Citovsky V. Agrobacterium T-DNA integration: molecules and models. Trends Genet. 20 (2004) 375-383
23. Zambryski P., Joos H., Genetello C., Leemans J., Montagu M.V., and Schell J. Ti plasmid vector for the introduction of DNA into plant cells without alteration of their normal regeneration capacity. EMBO J. 2 (1983) 2143-2150
24. Zhu Q.H., Ramm K., Eamens A.L., Dennis E.S., and Upadhyaya N.M. Transgene structures suggest that multiple mechanisms are involved in T-DNA integration in plants. Plant Sci. 171 (2006) 308-322