Replacing the wild type loxP site in BACs from the public domain with lox66 using a lox66 transposon

BMC Research Notes

Volumn 3, Issue , 2010, Pages

  Chatterjee, Pradeep K ^a   Shakes, Leighcraft A ^a   Stennett, Naima ^a   Richardson, Vanessa L ^a   Malcolm, Tennison L ^a   Harewood, Ken R ^a  

^a NORTH CAROLINA CENTRAL UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DANIO RERIO;

EID: 77949865822     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-3-38     Document Type: Article

References (30)

1. Single-copy transgenic mice with chosen-site integration. S Bronson E Plaehn K Kluckman J Hagaman N Maeda O Smithies, Proc Natl Acad Sci USA 1996 93 9067 9072
2. Context dependent function of APPb Enhancer identified using Enhancer Trap-containing BACs as Transgenes in Zebrafish. LA Shakes TL Malcolm KL Allen S De KR Harewood PK Chatterjee, Nucleic Acids Research 2008 36 6237 6248
3. Targeted insertion of exogenous DNA into the eukaryotic genome by the Cre recombinase. B Sauer N Hendenson, New Biol 1990 441 449
4. Site-specific integration of DNA into wild-type and mutant lox sites placed in the plant genome. H Albert EC Dale E Lee DW Ow, Plant J 1995 7 649 659
5. Targeted integration of DNA using mutant lox sites in embryonic stem cells. K Araki M Araki K Yamamura, Nucleic Acids Res 1997 25 868 872
6. Retrofitting BACs and PACs with LoxP Transposons to Generate Nested Deletions. "Bacterial Artificial Chromosomes". PK Chatterjee, Methods in Mol Biology 2004 1 231 241
7. Minimal Cross-recombination between wild type and lox511 sites in vivo facilitates Truncating Both Ends of Large DNA Inserts in pBACe3.6 and Related Vectors. LA Shakes DM Garland DK Srivastava KR Harewood PK Chatterjee, Nucleic Acids Research 2005 33 e118
8. PK Chatterjee JC Baker JrPreparing Nested Deletions Template DNA for Field Inversion Gel Electrophoresis Analyses and Position-Specific End Sequencing With Transposon Primers. "Bacterial Artificial Chromosomes" vol 1, pp 243-254.
9. Methods in Mol Biology series The Humana Press Inc, Shaying Zhao, Marvin Stodolsky, 2004 255
10. Direct Sequencing of Bacterial and P1 Artificial Chromosome Nested-deletions for Identifying Position-Specific Single Nucleotide Polymorphisms. PK Chatterjee DP Yarnall SA Haneline MM Godlevski SJ Thornber PS Robinson HE Davies NJ White JH Riley NS Shepherd, Proc Natl Acad Sci (USA) 1999 96 13276 13281
11. The role of the loxP spacer region in P1 site-specific recombination. RH Hoess A Wierzbicki K Abremski, Nucleic Acids Res 1986 14 2287 2300
12. Role of nucleotide sequences of loxP spacer region in Cre-mediated recombination. G Lee I Saito, Gene 1998 216 55 65
13. Using an in vivo phagemid system to identify non-compatible loxP sequences. RW Siegel R Jain A Bradbury, FEBS lett 2001 505 467 473
14. A genetic screen identifies novel non-compatible loxP sites. SJ Langer AP Ghafoori M Byrd L Leinwand, Nucleic Acids Res 2002 30 3067 3077
15. A high-throughput screen identifying sequence and promiscuity characteristics of the lox P spacer region in Cre-mediated recombination. PI Missirlis DE Smailus RA Holt, BMC Genomics 2006 7 73 85
16. A randomized library approach to identifying functional lox site domains for the Cre recombinase. J Sheren SJ Langer LA Leinwand, Nucleic Acids Res 2007 35 5464 5473
17. An efficient method for high-fidelity BAC/PAC retrofitting with a selectable marker for mammalian cell transfection. Z Wang P Engler A Longacre U Storb, Genome Res 2001 11 137 142
18. Cre mutants with altered DNA binding properties. M Hartung B Kisters-Woike, J Biol Chem 1998 273 22884 22891
19. Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse. F Guo DN Gopaul GD Van Duyne, Nature 1997 389 40 46
20. Selecting Transpositions of a Markerless Transposon Using Phage P1 Headful Packaging: New Transposons for Functionally Mapping Long Range Regulatory Sequences in BACs. PK Chatterjee S Mukherjee LA Shakes W Wilson III KR Harewood G Byrd, Analytical Biochemistry 2004 335 305 315
21. Highly conserved non-coding sequences are associated with vertebrate development. A Woolfe M Goodson DK Goode P Snell GK McEwen T Vavouri SF Smith P North H Callaway K Kelly K Walter I Abnizova W Gilks YJ Edwards JE Cooke G Elgar, PLoS Biol 2005 3 7
22. Subfunctionalization of duplicated zebrafish pax6 genes by cis-regulatory divergence. DA Kleinjan RM Bancewicz P Gautier R Dahm HB Schonthaler G Damante A Seawright AM Hever PL Yeyati V van Heyningen P Coutinho, PLoS Genet 2008 4 29
23. Site-Directed Gene Integration in Transgenic Zebrafish Mediated by Cre Recombinase Using a Combination of Mutant Lox Sites. WY Liu Y Wang Y Qin YP Wang ZY Zhu, Marine Biotechnology 2007 9 420 428
24. Bacteriophage P1 Cre-loxP site-specific recombination. Site-specific DNA topoisomerase activity of the Cre recombination protein. K Abremski A Wierzbicki B Frommer RH Hoess, J Biol Chem 1986 261 391 396
25. Mammalian genomes contain active recombinase recognition sites. B Thyagarajan MJ Guimaraes AC Groth MP Calos, Gene 2000 244 47 54
26. Illegitimate Cre-dependent chromosome rearrangements in transgenic mouse spermatids. EE Schmidt DS Taylor JR Prigge S Barnett MR Capecchi, Proc Natl Acad Sci USA 2000 97 13702 13707
27. Cryptic loxP sites in mammalian genomes: genome-wide distribution and relevance for the efficiency of BAC/PAC recombineering techniques. S Semprini TJ Troup N Kotelevtseva K King JR Davis LJ Mullins KE Chapman DR Dunbar JJ Mullins, Nucleic Acids Res 2007 35 1402 1410
28. Highly efficient modification of bacterial artificial chromosomes (BACs) using novel shuttle vectors containing the R6Kgamma origin of replication. S Gong XW Yang C Li N Heintz, Genome Res 2002 12 1992 1998
29. Rapid modification of Bacterial Artificial Chromosomes by ET recombination. JP Muyrers Y Zhang G Testa AF Stewart, Nucleic Acids Res 1999 27 1555 1557
30. Modification of bacterial artificial chromosomes through chi-stimulated homologous recombination and its application in zebrafish transgenesis. JR Jessen A Meng RJ McFarlane BH Paw LI Zon GR Smith S Lin, Proc Natl Acad Sci USA 1998 95 5121 5126