Estimated breeding values and association mapping for persistency and total milk yield using natural cubic smoothing splines

Genetics Selection Evolution

Volumn 41, Issue 1, 2009, Pages

  Verbyla, Klara L ^a   Verbyla, Arunas P ^b,c  

^a DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

^b UNIVERSITY OF ADELAIDE   (Australia)

^c CSIRO   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BREEDING POPULATION; GENOME; LACTATION; MILK PRODUCTION;

HUMAN HERPESVIRUS 4;

ANIMAL; BIOLOGICAL MODEL; BOVINAE; BREEDING; CHEMISTRY; FEMALE; GENETICS; LACTATION; MALE; MILK; PHYSIOLOGY; QUANTITATIVE TRAIT; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; BREEDING; CATTLE; FEMALE; LACTATION; MALE; MILK; MODELS, GENETIC; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT, HERITABLE;

EID: 77949852015     PISSN: 0999193X     EISSN: 12979686     Source Type: Journal    
DOI: 10.1186/1297-9686-41-48     Document Type: Article

References (39)

1. Persistency of lactation yield: A novel approach. M Grossman SM Hartz WJ Koops, J Dairy Sci 1999 82 2192 2197 10531606
2. Genetic and environmental smoothing of lactation curves with cubic splines. IM White R Thompson S Brotherstone, J Dairy Sci 1999 82 632 638 10194684
3. Modeling Lactation Curves and Estimation of Genetic Parameters for First Lactation Test-Day Records of French Holstein Cows. T Druet F Jaffrezic D Boichard V Ducrocq, J Dairy Sci 2003 86 2480 2490 12906066
4. Economic aspects of persistency of lactation in dairy cattle. JCM Dekkers JH Ten Hag A Weersink, Livest Prod Sci 1998 53 237 252
5. Phenotypic relationships of common health disorders in dairy cows to lactation persistency estimated from daily milk weights. J Appuhamy BG Cassell CD Dechow JB Cole, J Dairy Sci 2007 90 4424 4434 17699063
6. Genetic parameters for health traits and their relationship to different persistency traits in German Holstein dairy cattle. B Harder J Bennewitz D Hinrichs E Kalm, J Dairy Sci 2006 89 3202 3212 16840638
7. Response of Health Care to Selection for Milk Yield of Dairy Cattle. WP Jones LB Hansen H Chester-Jones, J Dairy Sci 1994 77 3137 3152 7836603
8. Genetic relationships between persistency and reproductive performance in first-lactation Canadian Holsteins. BL Muir J Fatehi LR Schaeffer, J Dairy Sci 2004 87 3029 3037 15375065
9. Genetic improvement of total milk yield and total lactation persistency of the first three lactations in dairy cattle. K Togashi CY Lin, J Dairy Sci 2008 91 2836 2843 18565941
10. Maximization of Lactation Milk Production Without Decreasing Persistency. K Togashi CY Lin, J Dairy Sci 2005 88 2975 2980 16027211
11. Persistency of lactation yields: A review. N Gengler, Interbull Bulletin 1996 12 87 96
12. Estimation of genetic parameters for test day records of dairy traits in the first three lactations. T Druet F Jaffrezic V Ducrocq, Genet Sel Evol 2005 37 257 271 15823235
13. Selection for milk production and persistency using eigenvectors of the random regression coefficient matrix. K Togashi CY Lin, J Dairy Sci 2006 89 4866 4873 17106117
14. Genetic evaluation and best prediction of lactation persistency. JB Cole PM VanRaden, J Dairy Sci 2006 89 2722 2728 16772591
15. Genetic evaluation of lactation persistency for five breeds of dairy cattle. JB Cole DJ Null, J Dairy Sci 2009 92 2248 2258 19389984
16. A Bayesian approach to variable selection when the number of variables is very large. H Kiiveri, Science and Statistics: A Festschrift for Terry Speed Lecture Notes - Monograph Series. Institute of Mathematical Statistics 2003 127 143
17. A general approach to simultaneous model fitting and variable elimination in response models for biological data with many more variables than observations. H Kiiveri, BMC Bioinformatics 2008 18410693
18. The analysis of QTL by simultaneous use of the full linkage map. AP Verbyla BR Cullis R Thompson, Theor Appl Genet 2007 116 95 111 17952402
19. Genetic analysis of persistency in the Israeli Holstein population by the multitrait animal model. JI Weller E Ezra G Leitner, J Dairy Sci 2006 89 2738 2746 16772593
20. Genetic Correlation Patterns Between Somatic Cell Score and Protein Yield in the Italian Holstein-Friesian Population. AB Samoré AF Groen PJ Boettcher J Jamrozik F Canavesi A Bagnato, J Dairy Sci 2008 91 4013 4021 18832227
21. Imputation methods to improve inference in SNP association studies. JY Dai I Ruczinski M LeBlanc C Kooperberg, Genet Epidemiol 2006 30 690 702 16986162
22. The analysis of crop evaluation data in Australia. AB Smith BR Cullis AR Gilmour, Aust N Z J Stat 2001 43 129 145
23. The analysis of designed experiments and longitudinal data by using smoothing splines. AP Verbyla BR Cullis MG Kenward SJ Welham, J R Stat Soc Ser C Appl Stat 1999 48 269 300
24. PJ Green BW Silverman, Nonparametric Regression and Generalized Linear Models London: Chapman & Hall 1994
25. Smoothing biological data with splines. IMS White BR Cullis AR Gilmour T R, Proceedings of the International Biometrics conference 1999 308 316
26. Genotype by environment variance heterogeneity in a two-stage analysis. A Frensham B Cullis A Verbyla, Biometrics 1997 53 1373 1383
27. NCBI Map Viewer: Bos Taurus (cattle) genome view. http://www.ncbi.nlm. nih.gov/mapview/map-search.cgi?taxid=9913
28. AR Gilmour BJ Gogel BR Cullis R Thompson, ASREML Program user manual Hemel Hempstead, HP1 1ES, UK: VSN International Ltd 2 2006
29. R Development Core Team, R: A language and environment for statistical computing Vienna, Austria: R Foundation for Statistical Computing 2007
30. Genetic parameters for milk production and persistency for Danish Holsteins estimated in random regression models using REML. JH Jakobsen P Madsen J Jensen J Pedersen LG Christensen DA Sorensen, J Dairy Sci 2002 85 1607 1616 12146494
31. Bayesian analysis of lactation curves of Holstein-Friesian cattle using a nonlinear model. R Rekaya MJ Carabano MA Toro, J Dairy Sci 2000 83 2691 2701 11104290
32. Genes in the vicinity of CFTR modulate the cystic fibrosis phenotype in highly concordant or discordant F508del homozygous sib pairs. F Mekus U Laabs H Veeze B Tummler, Hum Genet 2003 112 1 11 12483292
33. Polymorphisms and haplotypes in the bovine neuropeptide Y, growth hormone receptor, ghrelin, insulin-like growth factor 2, and uncoupling proteins 2 and 3 genes and their associations with measures of growth, performance, feed efficiency, and carcass merit in beef cattle. EL Sherman JD Nkrumah BM Murdoch C Li Z Wang A Fu SS Moore, J Anim Sci 2008 86 1 16 17785604
34. A novel nuclear-encoded mitochondrial poly(A) polymerase PAPD1 is a potential candidate gene for the extreme obesity related phenotypes in mammals. Q Xiao X-L Wu JJ Michal JJ Reeves JR Busboom GH Thorgaard Z Jiang, Int J Biol Sci 2006 2 171 178 16810331
35. Obesity may impair lactogenesis II. KM Rasmussen JA Hilson CL Kjolhede, J Nutr 2001 131 3009S 3011S 11694637
36. Leptin inhibits hepatocyte growth factor-induced ductal morphogenesis of bovine mammary epithelial cells. D Yamaji A Kamikawa MM Soliman T Ito MM Ahmed K Makondo A Watanabe M Saito K Kimura, Jpn J Vet Res 2007 54 183 189 17405355
37. Detection of quantitative trait loci affecting milk production, health, and reproductive traits in Holstein cattle. MS Ashwell DW Heyen TS Sonstegard CP Van Tassell Y Da PM VanRaden M Ron JI Weller HA Lewin, J Dairy Sci 2004 87 468 475 14762090
38. Detection of QTL for milk production on Chromosomes 1 and 6 of Holstein cattle. J Nadesalingam Y Plante JP Gibson, Mamm Genome 2001 12 27 31 11178740
39. Multitrait quantitative trait loci mapping for milk production traits in Danish Holstein cattle. J Kucerova MS Lund P Sorensen G Sahana B Guldbrandtsen VH Nielsen B Thomsen C Bendixen, J Dairy Sci 2006 89 2245 2256 16702292