메뉴 건너뛰기




Volumn 5, Issue 3, 2010, Pages

Inferring the ancient history of the translation machinery and genetic code via recapitulation of ribosomal subunit assembly orders

Author keywords

[No Author keywords available]

Indexed keywords

LARGE SUBUNIT RIBOSOMAL RNA; RIBOSOME PROTEIN; SMALL SUBUNIT RIBOSOMAL RNA; AMINO ACID;

EID: 77949742102     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0009437     Document Type: Article
Times cited : (14)

References (20)
  • 2
    • 33750083647 scopus 로고    scopus 로고
    • Transcription and translation in an RNA world
    • Taylor WR (2006) Transcription and translation in an RNA world. Philos Trans R Soc Lond B Biol Sci 361: 1751-1760.
    • (2006) Philos Trans R Soc Lond B Biol Sci , vol.361 , pp. 1751-1760
    • Taylor, W.R.1
  • 3
    • 33750486189 scopus 로고    scopus 로고
    • A molecular model for the origin of protein translation in an RNA world
    • Taylor WR (2006) A molecular model for the origin of protein translation in an RNA world. J Theor Biol 243: 393-406.
    • (2006) J Theor Biol , vol.243 , pp. 393-406
    • Taylor, W.R.1
  • 4
    • 34347347191 scopus 로고    scopus 로고
    • On the origin of the translation system and the genetic code in the RNA world by means of natural selection, exaptation, and subfunctionalization
    • Wolf YI, Koonin EV (2007) On the origin of the translation system and the genetic code in the RNA world by means of natural selection, exaptation, and subfunctionalization. Biol Direct 2: 14.
    • (2007) Biol Direct , vol.2 , pp. 14
    • Wolf, Y.I.1    Koonin, E.V.2
  • 5
    • 35748967846 scopus 로고    scopus 로고
    • Signature of a Primitive Genetic Code in Ancient Protein Lineages
    • Fournier GP, Gogarten JP (2007) Signature of a Primitive Genetic Code in Ancient Protein Lineages. J Mol Evol 65: 425-436.
    • (2007) J Mol Evol , vol.65 , pp. 425-436
    • Fournier, G.P.1    Gogarten, J.P.2
  • 6
    • 33749001627 scopus 로고    scopus 로고
    • The Evolutionary History of the Translation Machinery
    • de Pouplana LR, ed, Kluwer Academic/Plenum Publishers
    • Fox GE, Naik AK (2004) The Evolutionary History of the Translation Machinery. In: de Pouplana LR, ed. The Genetic Code and the Origin of Life: Kluwer Academic/Plenum Publishers.
    • (2004) The Genetic Code and the Origin of Life
    • Fox, G.E.1    Naik, A.K.2
  • 8
    • 34547571027 scopus 로고    scopus 로고
    • The M-Coffee web server: A meta-method for computing multiple sequence alignments by combining alternative alignment methods
    • Moretti S, Armougom F, Wallace IM, Higgins DG, Jongeneel CV, et al. (2007) The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. Nucleic Acids Res 35: W645-648.
    • (2007) Nucleic Acids Res , vol.35
    • Moretti, S.1    Armougom, F.2    Wallace, I.M.3    Higgins, D.G.4    Jongeneel, C.V.5
  • 9
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighing, position-specific gap penalties and weight matrix choice
    • Thompson J, Higgins D, Gibson T (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighing, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.1    Higgins, D.2    Gibson, T.3
  • 10
    • 9344244718 scopus 로고    scopus 로고
    • Assembly of the 30S ribosomal subunit: Positioning ribosomal protein S13 in the S7 assembly branch
    • Grondek JF, Culver GM (2004) Assembly of the 30S ribosomal subunit: positioning ribosomal protein S13 in the S7 assembly branch. Rna 10: 1861-1866.
    • (2004) Rna , vol.10 , pp. 1861-1866
    • Grondek, J.F.1    Culver, G.M.2
  • 11
    • 24044503087 scopus 로고    scopus 로고
    • Protein content of minimal and ancestral ribosome
    • Mushegian A (2005) Protein content of minimal and ancestral ribosome. Rna 11: 1400-1406.
    • (2005) Rna , vol.11 , pp. 1400-1406
    • Mushegian, A.1
  • 12
    • 77949681061 scopus 로고    scopus 로고
    • Felsenstein J (2005) PHYLIP (Phylogeny Inference Package). 3.6 ed: Distributed by the Author.' Department of Genome Sciences, University of Washington, Seattle.
    • Felsenstein J (2005) PHYLIP (Phylogeny Inference Package). 3.6 ed: Distributed by the Author.' Department of Genome Sciences, University of Washington, Seattle.
  • 13
    • 8744259751 scopus 로고    scopus 로고
    • Reconstruction of ancestral protein sequences and its applications
    • Cai W, Pei J, Grishin NV (2004) Reconstruction of ancestral protein sequences and its applications. BMC Evol Biol 4: 33.
    • (2004) BMC Evol Biol , vol.4 , pp. 33
    • Cai, W.1    Pei, J.2    Grishin, N.V.3
  • 14
    • 0034736513 scopus 로고    scopus 로고
    • Consensus temporal order of amino acids and evolution of the triplet code
    • Trifonov EN (2000) Consensus temporal order of amino acids and evolution of the triplet code. Gene 261: 139-151.
    • (2000) Gene , vol.261 , pp. 139-151
    • Trifonov, E.N.1
  • 15
    • 24744438421 scopus 로고    scopus 로고
    • Glu-Q-tRNA(Asp) synthetase coded by the yadB gene, a new paralog of aminoacyl-tRNA synthetase that glutamylates tRNA(Asp) anticodon
    • Blaise M, Becker HD, Lapointe J, Cambillau C, Giege R, et al. (2005) Glu-Q-tRNA(Asp) synthetase coded by the yadB gene, a new paralog of aminoacyl-tRNA synthetase that glutamylates tRNA(Asp) anticodon. Biochimie 87: 847-861.
    • (2005) Biochimie , vol.87 , pp. 847-861
    • Blaise, M.1    Becker, H.D.2    Lapointe, J.3    Cambillau, C.4    Giege, R.5
  • 16
    • 0031081750 scopus 로고    scopus 로고
    • Aminoacyl-tRNA synthesis: Divergent routes to a common goal
    • Ibba M, Curnow AW, Soll D (1997) Aminoacyl-tRNA synthesis: divergent routes to a common goal. Trends Biochem Sci 22: 39-42.
    • (1997) Trends Biochem Sci , vol.22 , pp. 39-42
    • Ibba, M.1    Curnow, A.W.2    Soll, D.3
  • 17
    • 0037020225 scopus 로고    scopus 로고
    • Evolutionary divergence of the archaeal aspartyl-tRNA synthetases into discriminating and nondiscriminating forms
    • Tumbula-Hansen D, Feng L, Toogood H, Stetter KO, Soll D (2002) Evolutionary divergence of the archaeal aspartyl-tRNA synthetases into discriminating and nondiscriminating forms. J Biol Chem 277: 37184-37190.
    • (2002) J Biol Chem , vol.277 , pp. 37184-37190
    • Tumbula-Hansen, D.1    Feng, L.2    Toogood, H.3    Stetter, K.O.4    Soll, D.5
  • 18
    • 33746526551 scopus 로고    scopus 로고
    • Prediction of RNA binding sites in proteins from amino acid sequence
    • Terribilini M, Lee JH, Yan C, Jernigan RL, Honavar V, et al. (2006) Prediction of RNA binding sites in proteins from amino acid sequence. Rna 12: 1450-1462.
    • (2006) Rna , vol.12 , pp. 1450-1462
    • Terribilini, M.1    Lee, J.H.2    Yan, C.3    Jernigan, R.L.4    Honavar, V.5
  • 19
    • 0028906228 scopus 로고
    • Speculations on the origin of the genetic code
    • Hartman H (1995) Speculations on the origin of the genetic code. J Mol Evol 40: 541-544.
    • (1995) J Mol Evol , vol.40 , pp. 541-544
    • Hartman, H.1
  • 20
    • 0016163562 scopus 로고    scopus 로고
    • Jukes TH (1974) The intruder hypothesis and selection against arginine. Biochem Biophys Res Commun 58: 80-84. 21. Nagel GM, Doolittle RF (1991) Evolution and relatedness in two aminoacyl-tRNA synthetase families. Proc Natl Acad Sci U S A 88: 8121-8125.
    • Jukes TH (1974) The "intruder" hypothesis and selection against arginine. Biochem Biophys Res Commun 58: 80-84. 21. Nagel GM, Doolittle RF (1991) Evolution and relatedness in two aminoacyl-tRNA synthetase families. Proc Natl Acad Sci U S A 88: 8121-8125.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.