Assembly of the 30S ribosomal subunit: Positioning ribosomal protein S13 in the S7 assembly branch

RNA

Volumn 10, Issue 12, 2004, Pages 1861-1866

  Grondek, Joel F ^a   Culver, Gloria M ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

30S subunit; Assembly; Ribosome; S13

Indexed keywords

RIBONUCLEOPROTEIN; RIBOSOMAL PROTEIN S13; RIBOSOMAL PROTEIN S20; RIBOSOMAL PROTEIN S7; RIBOSOME PROTEIN; RNA 16S; UNCLASSIFIED DRUG;

ARTICLE; ESCHERICHIA COLI; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; PROTEIN RNA BINDING; RIBOSOME SUBUNIT;

ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MODELS, MOLECULAR; MULTIPROTEIN COMPLEXES; NUCLEIC ACID CONFORMATION; RECOMBINANT PROTEINS; RIBOSOMAL PROTEINS; RIBOSOMES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PROKARYOTA;

EID: 9344244718     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1261/rna.7130504     Document Type: Article

References (20)

1. Brodersen, C.W.J., Carter, A.P., Wimberly, B.T., and Ramakrishnan, V. 2002. Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: Structure of the proteins and their interactions with 16 S RNA. J. Mol. Biol. 316: 725-768.
2. Cannone, J.J., Subramanian, S., Schnare, M.N., Collett, J.R., D'Souza, L.M., Du, Y., Feng, B., Lin, N., Madabusi, L.V., Muller, K.M., et al. 2002. The comparative RNA Web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3: 2.
3. Capel, M.S., Engelman, D.M., Freeborn, B.R., Kjeldgaard, M., Langer, J.A., Ramakrishnan, V., Schindler, D.G., Schneider, D.K., Schoenborn, B.P., Sillers, I.Y., et al. 1987. A complete mapping of the proteins in the small ribosomal subunit of Escherichia coli. Science 238: 1403-1406.
4. Carson, M. 1997. Ribbons. Methods Enzymol. 277: 493-505.
5. Culver, G.M. and Noller, H.F. 1999. Efficient reconstitution of functional Escherichia coli 30S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins. RNA 5: 832-843.
6. -. 2000. Reconstitution of 30S ribosomal subunits using complete set of recombinant proteins. Methods Enzymol. 318: 446-460.
7. Heilek, G.M. and Noller, H.F. 1996. Directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S13 using tethered Fe(II). RNA 2: 597-602.
8. Held, W.A., Ballou, B., Mizushima, S., and Nomura, M. 1974. Assembly mapping of 30S ribosomal proteins from Escherichia coli. J. Biol. Chem. 249: 3103-3111.
9. Lake, J. 1975. Ribosomal proteins S5, S11, S13 and S19 localized by electron microscopy of antibody-labeled subunits. J. Mol. Biol. 99: 631-644.
10. Lutter, L., Bode, U., Kurland, C., and Stoffler, G. 1974. Ribosomal protein neighborhoods. III. Cooperativity of assembly. Mol. Gen. Genet. 129: 167-176.
11. Mizushima, S. and Nomura, M. 1970. Assembly mapping of 30S ribosomal proteins in E. coli. Nature 226: 1214-1218.
12. Moazed, D., Stern, S., and Noller, H.F. 1986. Rapid chemical probing of conformations in 16S ribosomal RNA and 30S ribosomal subunits using primer extension. J. Mol. Biol. 187: 399-416.
13. Pohl, T. and Wittmann-Liebold, B. 1988. Identification of a cross-link in the Escherichia coli ribosomal protein pair S13-S19 at the amino acid level. J. Biol. Chem. 263: 4293-4301.
14. Powers, T., Stern, S., Changchien, L.M., and Noller, H.F. 1988a. Probing the assembly of the 3′ major domain of 16 S rRNA. Interactions involving ribosomal proteins S2, S3, S10, S13 and S14. J. Mol. Biol. 201: 697-716.
15. Powers, T., Changchien, L., Craven, G., and Noller, H.F. 1988b. Probing the assembly of the 3′ major domain of 16 S ribosomal RNA. Quaternary interactions involving ribosomal proteins S7, S9 and S19. J. Mol. Biol. 200: 309-319.
16. Samaha, R.R., O'Brien, B., O'Brien, T.W., and Noller, H.F. 1994. Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16S rRNA. Proc. Natl. Acad. Sci. 91: 7884-7888.
17. Schaup, H.W., Green, M., and Kurland, C.G. 1970. Molecular interactions of ribosomal components. I. Identification of RNA binding sites for individual 30S ribosomal proteins. Mol. Gen. Genet. 109: 193-205.
18. Stern, S., Changchien, L.M., Craven, G.R., and Noller, H.F. 1988. Interaction of proteins S16, S17 and S20 with 16 S ribosomal RNA. J. Mol. Biol. 200: 291-299.
19. Traub, P. and Nomura, M. 1968. Structure and function of E. coli ribosomes, V. Reconstitution of functionally active 30S ribosomal particles from RNA and proteins. Proc. Natl. Acad. Sci. 59: 777-784.
20. Wimberly, B.T., Brodersen, D.E., Clemons, W.M.J., Morgan-Warren, R.J., Carter, A.P., Vonrhein, C., Hartsch, T., and Ramakrishnan, V. 2000. Structure of the 30S ribosomal subunit. Nature 407: 327-339.