Efficient molecular surface rendering by linear-time pseudo-Gaussian approximation to Lee-Richards surfaces (PGALRS)

Journal of Applied Crystallography

Volumn 43, Issue 2, 2010, Pages 356-361

  Bernstein, Herbert J ^a   Craig, Paul A ^b  

^a DOWLING COLLEGE   (United States)

^b ROCHESTER INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77949539292     PISSN: 00218898     EISSN: 16005767     Source Type: Journal    
DOI: 10.1107/S0021889809054326     Document Type: Article

References (27)

1. Andrews, L. (2001). C/C++ Users J. 19, 40-49.
2. Baker, E. et al. (1988). Philos. Trans. Biol. Sci. 319, 369-456.
3. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235-242.
4. Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F. Jr, Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T. & Tasumi, M. (1977). J. Mol. Biol. 112, 535-542.
5. Bernstein, H. J. (2000). Trends Biochem. Sci. 25, 453-455.
6. Bernstein, H. J., Awuah Asiamah, I., Darakev, G., Darakev, N., Jemilawon, J., Jia, N., Kamburov, P., McQuillan, G. & Todorov, G. (2008). 2008 Meeting of the American Crystallographic Association, 31 May-5 June 2008, Knoxville, TN, USA.
7. Bystroff, C. (2002). Protein Eng. 15, 959-965.
8. Connolly, M. L. (1983). Science, 221, 709-713.
9. Craig, P. A., Hanson, B., Westin, C., Wischmeyer, C. & Bernstein, H. (2009). American Crystallographic Association Meeting, 25-30 July 2009, Toronto, Canada.
10. DeLano, W. L. (2002). The PyMol Molecular Graphics System, http:// www.pymol.org.
11. Doucette, L., Matthews, D., Craig, P. A. & Bernstein, H. J. (2009). Rochester Institutue of Technology 18th Annual Undergraduate Research Symposium, 7 August 2009, Rochester Institute of Technology, NY, USA.
12. Im, W., Beglov, D. & Roux, B. (1998). Comput. Phys. Commun. 111, 59-75.
13. Ivanov, P. S., Jain, P., Osei-Kuffuor, D., Stanev, V. S., Tripathi, R., Zhivkov, P. N. & Bernstein, H. J. (2003). Proceedings of the National Conference of Undergraduate Research, 13-15 March 2003, University of Utah, Salt Lake City, UT, USA.
14. Jemilawon, J., Awuah Asiamah, I., Bernstein, H. J., Darakev, G., Darakev, N. & Kamburov, P. (2007). 9th International Conference on Biology and Synchrotron Radiation, 13-17 August 2007, Manchester, UK.
15. Kagawa, R.,Montgomery, M., Braig, K., Leslie, A. & Walker, J. (2004). EMBO J. 23, 2734-2744.
16. Katz, L. & Levinthal, C. (1972). Annu. Rev. Biophys. Bioeng. 1, 465-504.
17. Klein, D., Schmeing, T., Moore, P. & Steitz, T. (2001). EMBO J. 20, 4214-4221.
18. Le Grand, S. & Merz, K. (1993). J. Comput. Chem. 14, 349-352.
19. Lee, B. & Richards, F. M. (1971). J. Mol. Biol. 55, 379-400.
20. Lee,M., Feig, M., Salsbury, F. & Brooks, C. (2003). J. Comput. Chem. 24, 1348-1356.
21. Liang, J., Edelsbrunner, H. & Woodward, C. (1998). Protein Sci. 7, 1884-1897.
22. Ogle, J., Murphy, F., Tarry, M. & Ramakrishnan, V. (2002). Cell, 111, 721-732.
23. Rosa, M., Craig, P. A. & Bernstein, H. J. (2009). Rochester Institutue of Technology 18th Annual Undergraduate Research Symposium, 7 August 2009, Rochester Institute of Technology, NY, USA.
24. Sanner, M. F., Olson, A. J. & Spehner, J. C. (1996). Biopolymers, 38, 305-320.
25. Sayle, R. A. & Milner-White, E. J. (1995). Trends Biochem. Sci. 20, 374-376.
26. Vertrees, J. (2008). Huge surfaces, http://pymolwiki.org/index.php/Huge- surfaces.
27. Yeates, T. (1995). J. Mol. Biol. 249, 804-815.