메뉴 건너뛰기




Volumn 5, Issue 1, 2010, Pages

Phylogenetic comparative assembly

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 77249084269     PISSN: None     EISSN: 17487188     Source Type: Journal    
DOI: 10.1186/1748-7188-5-3     Document Type: Article
Times cited : (15)

References (23)
  • 1
    • 0018426987 scopus 로고
    • A strategy of DNA sequencing employing computer programs
    • 10.1093/nar/6.7.2601, 327874, 461197
    • Staden R. A strategy of DNA sequencing employing computer programs. Nucleic Acids Res 1979, 6(7):2601-2610. 10.1093/nar/6.7.2601, 327874, 461197.
    • (1979) Nucleic Acids Res , vol.6 , Issue.7 , pp. 2601-2610
    • Staden, R.1
  • 2
    • 0019877035 scopus 로고
    • Shotgun DNA sequencing using cloned DNase I-generated fragments
    • 10.1093/nar/9.13.3015, 327328, 6269069
    • Anderson S. Shotgun DNA sequencing using cloned DNase I-generated fragments. Nucleic Acids Res 1981, 9(13):3015-3027. 10.1093/nar/9.13.3015, 327328, 6269069.
    • (1981) Nucleic Acids Res , vol.9 , Issue.13 , pp. 3015-3027
    • Anderson, S.1
  • 3
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis ER. The impact of next-generation sequencing technology on genetics. Trends Genet 2008, 24(3):133-141.
    • (2008) Trends Genet , vol.24 , Issue.3 , pp. 133-141
    • Mardis, E.R.1
  • 4
    • 39649084637 scopus 로고    scopus 로고
    • Bioinformatics challenges of new sequencing technology
    • 2680276, 18262676
    • Pop M, Salzberg SL. Bioinformatics challenges of new sequencing technology. Trends Genet 2008, 24(3):142-149. 2680276, 18262676.
    • (2008) Trends Genet , vol.24 , Issue.3 , pp. 142-149
    • Pop, M.1    Salzberg, S.L.2
  • 5
    • 0017681196 scopus 로고
    • DNA sequencing with chain-terminating inhibitors
    • 10.1073/pnas.74.12.5463, 431765, 271968
    • Sanger F, Nicklen S, Coulson AR. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 1977, 74(12):5463-5467. 10.1073/pnas.74.12.5463, 431765, 271968.
    • (1977) Proc Natl Acad Sci USA , vol.74 , Issue.12 , pp. 5463-5467
    • Sanger, F.1    Nicklen, S.2    Coulson, A.R.3
  • 6
    • 23144442407 scopus 로고    scopus 로고
    • Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies
    • 10.1093/nar/gki356, 1160117, 15980536
    • van Hijum SAFT, Zomer AL, Kuipers OP, Kok J. Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res 2005, 33:W560-W566. 10.1093/nar/gki356, 1160117, 15980536.
    • (2005) Nucleic Acids Res , vol.33
    • van Hijum, S.A.F.T.1    Zomer, A.L.2    Kuipers, O.P.3    Kok, J.4
  • 8
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-Like Alignment Tool
    • 187518, 11932250
    • Kent WJ. BLAT - The BLAST-Like Alignment Tool. Genome Res 2002, 12(4):656-664. 187518, 11932250.
    • (2002) Genome Res , vol.12 , Issue.4 , pp. 656-664
    • Kent, W.J.1
  • 9
    • 34547852218 scopus 로고    scopus 로고
    • OSLay: optimal syntenic layout of unfinished assemblies
    • 10.1093/bioinformatics/btm153, 17463020
    • Richter DC, Schuster SC, Huson DH. OSLay: optimal syntenic layout of unfinished assemblies. Bioinformatics 2007, 23(13):1573-1579. 10.1093/bioinformatics/btm153, 17463020.
    • (2007) Bioinformatics , vol.23 , Issue.13 , pp. 1573-1579
    • Richter, D.C.1    Schuster, S.C.2    Huson, D.H.3
  • 10
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D, Abajian C, Green P. Consed: a graphical tool for sequence finishing. Genome Res 1998, 8(3):195-202.
    • (1998) Genome Res , vol.8 , Issue.3 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 11
    • 45549101719 scopus 로고    scopus 로고
    • A new pheromone trail-based genetic algorithm for comparative genome assembly
    • 10.1093/nar/gkn168, 2425481, 18445633
    • Zhao F, Zhao F, Li T, Bryant DA. A new pheromone trail-based genetic algorithm for comparative genome assembly. Nucleic Acids Res 2008, 36(10):3455-3462. 10.1093/nar/gkn168, 2425481, 18445633.
    • (2008) Nucleic Acids Res , vol.36 , Issue.10 , pp. 3455-3462
    • Zhao, F.1    Zhao, F.2    Li, T.3    Bryant, D.A.4
  • 12
    • 33646000287 scopus 로고    scopus 로고
    • Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length
    • Rasmussen KR, Stoye J, Myers EW. Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length. J Comp Biol 2006, 13(2):296-308.
    • (2006) J Comp Biol , vol.13 , Issue.2 , pp. 296-308
    • Rasmussen, K.R.1    Stoye, J.2    Myers, E.W.3
  • 13
    • 0026923887 scopus 로고
    • Fast Algorithms for Geometric Traveling Salesman Problems
    • Bentley JL. Fast Algorithms for Geometric Traveling Salesman Problems. Informs J Comp 1992, 4(4):387-411.
    • (1992) Informs J Comp , vol.4 , Issue.4 , pp. 387-411
    • Bentley, J.L.1
  • 18
    • 67649159262 scopus 로고    scopus 로고
    • EDGAR: A software framework for the comparative analysis of microbial genomes
    • 10.1186/1471-2105-10-154, 2696450, 19457249
    • Blom J, Albaum SP, Doppmeier D, Pühler A, Vorhölter FJ, Goesmann A. EDGAR: A software framework for the comparative analysis of microbial genomes. BMC Bioinformatics 2009, 10:154. 10.1186/1471-2105-10-154, 2696450, 19457249.
    • (2009) BMC Bioinformatics , vol.10 , pp. 154
    • Blom, J.1    Albaum, S.P.2    Doppmeier, D.3    Pühler, A.4    Vorhölter, F.J.5    Goesmann, A.6
  • 19
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4(4):406-425.
    • (1987) Mol Biol Evol , vol.4 , Issue.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 21
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • 10.1073/pnas.85.8.2444, 280013, 3162770
    • Pearson WR, Lipman DJ. Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 1988, 85(8):2444-2448. 10.1073/pnas.85.8.2444, 280013, 3162770.
    • (1988) Proc Natl Acad Sci USA , vol.85 , Issue.8 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 22
    • 0034274870 scopus 로고    scopus 로고
    • An Open Graph Visualization System and Its Applications to Software Engineering
    • Gansner ER, North SC. An Open Graph Visualization System and Its Applications to Software Engineering. Softw Pract Exper 1999, 30:1203-1233.
    • (1999) Softw Pract Exper , vol.30 , pp. 1203-1233
    • Gansner, E.R.1    North, S.C.2
  • 23
    • 33746361541 scopus 로고    scopus 로고
    • PHY.FI: fast and easy online creation and manipulation of phylogeny color figures
    • 10.1186/1471-2105-7-315, 1513607, 16792795
    • Fredslund J. PHY.FI: fast and easy online creation and manipulation of phylogeny color figures. BMC Bioinformatics 2006, 7:315. 10.1186/1471-2105-7-315, 1513607, 16792795.
    • (2006) BMC Bioinformatics , vol.7 , pp. 315
    • Fredslund, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.