-
1
-
-
0025312950
-
Sequence-directed curvature of DNA
-
Hagerman, P. J. (1990) Sequence-directed curvature of DNA. Annu. Rev. Biochem. 59, 755-781.
-
(1990)
Annu. Rev. Biochem.
, vol.59
, pp. 755-781
-
-
Hagerman, P.J.1
-
2
-
-
0034869839
-
Intrinsic DNA bends: An organizer of local chromatin structure for transcription
-
Ohyama, T. (2001) Intrinsic DNA bends: an organizer of local chromatin structure for transcription. BioEssays 23, 708-715.
-
(2001)
BioEssays
, vol.23
, pp. 708-715
-
-
Ohyama, T.1
-
3
-
-
34447537903
-
Curved DNA and prokaryotic promoters: A. Mechanism for activation of transcription
-
Ohyama, T., Ed, Springer, New York.
-
Asayama, M., and Ohyama, T. (2005) Curved DNA and Prokaryotic Promoters: A. Mechanism for Activation of Transcription, in DNA Conformation and Transcription (Ohyama, T., Ed), pp 37-51, Springer, New York.
-
(2005)
DNA Conformation and Transcription
, pp. 37-51
-
-
Asayama, M.1
Ohyama, T.2
-
4
-
-
26444540047
-
Curved DNA and transcription, in eukaryotes
-
Ohyama, T., Ed., Springer, New York.
-
Ohyama, T. (2005) Curved DNA and Transcription, in Eukaryotes, in DNA Conformation and Transcription (Ohyama, T., Ed.), pp 66-74, Springer, New York.
-
(2005)
DNA Conformation and Transcription
, pp. 66-74
-
-
Ohyama, T.1
-
5
-
-
0345099609
-
Left-handedly curved DNA regulates accessibility to cw-DNA elements in chromatin
-
Nishikawa, J., Amano, M., Fukue, Y., Tanaka, S., Kishi, H., Hirota, Y., Yoda, K., and Ohyama, T. (2003) Left-handedly curved DNA regulates accessibility to cw-DNA elements in chromatin. Nucleic Acids Res. 31, 6651-6662.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6651-6662
-
-
Nishikawa, J.1
Amano, M.2
Fukue, Y.3
Tanaka, S.4
Kishi, H.5
Hirota, Y.6
Yoda, K.7
Ohyama, T.8
-
6
-
-
34247275203
-
The location of the left-handedly curved. DNA sequence affects exogenous DNA expression in vivo
-
Kamiya, H., Fukunaga, S., Ohyama, T., and Harashima, H. (2007) The location of the left-handedly curved. DNA sequence affects exogenous DNA expression in vivo. Arch. Biochem. Biophys. 461, 7-12.
-
(2007)
Arch. Biochem. Biophys.
, vol.461
, pp. 7-12
-
-
Kamiya, H.1
Fukunaga, S.2
Ohyama, T.3
Harashima, H.4
-
7
-
-
33845479489
-
A designed curved DNA segment that is a remarkable activator of eukaryotic transcription
-
Sumida, N., Nishikawa, J., Kishi, H., Amano, M., Furuya, T., Sonobe, H., and Ohyama, T. (2006) A designed curved DNA segment that is a remarkable activator of eukaryotic transcription. FEBS J. 273, 5691-5702.
-
(2006)
FEBS J.
, vol.273
, pp. 5691-5702
-
-
Sumida, N.1
Nishikawa, J.2
Kishi, H.3
Amano, M.4
Furuya, T.5
Sonobe, H.6
Ohyama, T.7
-
8
-
-
33845509721
-
The role of unusual DNA structures in chromatin. Organization for transcription
-
Ohyama, T., Ed., Springer, New York.
-
Ohyama, T. (2005) The Role of Unusual DNA Structures in Chromatin. Organization for Transcription, in DNA Conformation and Transcription (Ohyama, T., Ed.), pp 177-188, Springer, New York.
-
(2005)
DNA Conformation and Transcription
, pp. 177-188
-
-
Ohyama, T.1
-
9
-
-
0027407636
-
Bipartite structure of an early meiotic upstream activation sequence from Saccharomyces cerevisiae
-
Bowdish, K. S., and Mitchell, A. P. (1993) Bipartite structure of an early meiotic upstream activation sequence from Saccharomyces cerevisiae. Mol. Cell. Biol. 13, 2172-2181.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 2172-2181
-
-
Bowdish, K.S.1
Mitchell, A.P.2
-
10
-
-
0020739930
-
Heme regulates transcription of the CYC1 gene of S. cerevisiae via an upstream activation site
-
Guarente, L., and Mason, T. (1983) Heme regulates transcription of the CYC1 gene of S. cerevisiae via an upstream activation site. Cell 32. 1279-1286.
-
(1983)
Cell
, vol.32
, pp. 1279-1286
-
-
Guarente, L.1
Mason, T.2
-
11
-
-
0003559611
-
-
Cold Spring Harbor Laboratory Press, Plainview, NY.
-
Burke, D., Dawson, D., and Stearns, T. (2000) Methods in Yeast Genetics: A Laboratory Course Manual, Cold Spring Harbor Laboratory Press, Plainview, NY.
-
(2000)
Methods in Yeast Genetics: A Laboratory Course Manual
-
-
Burke, D.1
Dawson, D.2
Stearns, T.3
-
12
-
-
0025799783
-
Nucleosomes are positioned with base pair precision adjacent to the a operator in Saccharomyces cerevisiae
-
Shimizu, M., Roth, S. Y., Szent-Gyorgyi, C., and Simpson, R. T. (1991) Nucleosomes are positioned with base pair precision adjacent to the a operator in Saccharomyces cerevisiae. EMBO J. 10, 3033-3041.
-
(1991)
EMBO J.
, vol.10
, pp. 3033-3041
-
-
Shimizu, M.1
Roth, S.Y.2
Szent-Gyorgyi, C.3
Simpson, R.T.4
-
13
-
-
0034600950
-
Destabilization of nucleosomes by an unusual DNA conformation adopted, by poly(dA) • (dT) tracts in vivo
-
Shimizu, M., Mori, T., Sakurai, T., and Shindo, H. (2000) Destabilization of nucleosomes by an unusual DNA conformation adopted, by poly(dA) • (dT) tracts in vivo. EMBO J. 19, 3358-3365.
-
(2000)
EMBO J.
, vol.19
, pp. 3358-3365
-
-
Shimizu, M.1
Mori, T.2
Sakurai, T.3
Shindo, H.4
-
14
-
-
0033388858
-
In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment
-
Kuo, M. H., and Allis, C. D. (1999) In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment. Methods 19, 425-433.
-
(1999)
Methods
, vol.19
, pp. 425-433
-
-
Kuo, M.H.1
Allis, C.D.2
-
15
-
-
0024261583
-
Nucleosome loss activates yeast downstream promoters in vivo
-
Han, M., and Grunstein, M. (1988) Nucleosome loss activates yeast downstream promoters in vivo. Cell 55, 1137-1145.
-
(1988)
Cell
, vol.55
, pp. 1137-1145
-
-
Han, M.1
Grunstein, M.2
-
16
-
-
0025977720
-
Two types of TATA elements for the CYC1 gene of the yeast Saccharomyces cerevisiae
-
Li, W. Z., and Sherman, F. (1991) Two types of TATA elements for the CYC1 gene of the yeast Saccharomyces cerevisiae. Mol. Cell. Biol. 11, 666-676.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 666-676
-
-
Li, W.Z.1
Sherman, F.2
-
17
-
-
0022399096
-
Each of three TATA elements specifies a subset of the transcription initiation sites at the CYC-1 promoter of Saccharomyces cerevisiae
-
Hahn, S., Hoar, E. T., and Guarente, L. (1985) Each of three "TATA elements" specifies a subset of the transcription initiation sites at the CYC-1 promoter of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U.S.A. 82, 8562-8566.
-
(1985)
Proc. Natl. Acad. Sci. U.S.A.
, vol.82
, pp. 8562-8566
-
-
Hahn, S.1
Hoar, E.T.2
Guarente, L.3
-
18
-
-
0021278372
-
Distinctly regulated tandem upstream activation sites mediate catabolite repression of the CYC1 gene of S. cerevisiae
-
Guarente, L., Lalonde, B., Gifford, P., and Alani, E. (1984) Distinctly regulated tandem upstream activation sites mediate catabolite repression of the CYC1 gene of S. cerevisiae. Cell 36, 503-511.
-
(1984)
Cell
, vol.36
, pp. 503-511
-
-
Guarente, L.1
Lalonde, B.2
Gifford, P.3
Alani, E.4
-
19
-
-
27744560350
-
Assembly of the Hap2p/Hap3p/ Hap4p/Hap5p-DNA complex in Saccharomyces cerevisiae
-
McNabb, D. S., and Pinto, I. (2005) Assembly of the Hap2p/Hap3p/ Hap4p/Hap5p-DNA complex in Saccharomyces cerevisiae. Eukaryotic Cell 4, 1829-1839.
-
(2005)
Eukaryotic Cell
, vol.4
, pp. 1829-1839
-
-
McNabb, D.S.1
Pinto, I.2
-
20
-
-
0025630022
-
Structural features of a regulatory nucleosome
-
Pina, B., Barettino, D., Truss, M., and Beato, M. (1990) Structural features of a regulatory nucleosome. J. Mol. Biol. 216, 975-990.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 975-990
-
-
Pina, B.1
Barettino, D.2
Truss, M.3
Beato, M.4
-
21
-
-
0024395456
-
Formation, stability and core histone positioning of nucleosomes reassembled on bent and other nucleosome-derived DNA
-
Pennings, S., Muyldermans, S., Meersseman, G., and Wyns, L. (1989) Formation, stability and core histone positioning of nucleosomes reassembled on bent and other nucleosome-derived DNA. J. Mol. Biol. 207, 183-192.
-
(1989)
J. Mol. Biol.
, vol.207
, pp. 183-192
-
-
Pennings, S.1
Muyldermans, S.2
Meersseman, G.3
Wyns, L.4
-
22
-
-
0025690307
-
Attraction, phasing and neighbour effects of histone octamers on curved DNA
-
Costanzo, G., Di Mauro, E., Salina, G., and Negri, R. (1990) Attraction, phasing and neighbour effects of histone octamers on curved DNA. Mol. Biol. 216, 363-374.
-
(1990)
Mol. Biol.
, vol.216
, pp. 363-374
-
-
Costanzo, G.1
Di Mauro, E.2
Salina, G.3
Negri, R.4
-
23
-
-
0025144957
-
Effects of DNA sequence and histone-histone interactions on nucleosome placement
-
Shrader, T. E., and Crothers, D. M. (1990) Effects of DNA sequence and histone-histone interactions on nucleosome placement. J. Mol. Biol. 216, 69-84.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 69-84
-
-
Shrader, T.E.1
Crothers, D.M.2
-
24
-
-
0031564633
-
Identification and characterization of genomic nucleosomepositioning sequences
-
Widlund, H. R., Cao, H., Simonsson, S., Magnusson, E., Simonsson, T., Nielsen, P. E., Kahn, J. D., Crothers, D. M., and Kubista, M. (1997) Identification and characterization of genomic nucleosomepositioning sequences. J. Mol. Biol. 267, 807-817.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 807-817
-
-
Widlund, H.R.1
Cao, H.2
Simonsson, S.3
Magnusson, E.4
Simonsson, T.5
Nielsen, P.E.6
Kahn, J.D.7
Crothers, D.M.8
Kubista, M.9
-
25
-
-
0026642219
-
Mobile nucleosomes: A general behavior
-
Meersseman, G., Pennings, S., and Bradbury, E. M. (1992) Mobile nucleosomes: a general behavior. EMBO J. 11, 2951-2959.
-
(1992)
EMBO J.
, vol.11
, pp. 2951-2959
-
-
Meersseman, G.1
Pennings, S.2
Bradbury, E.M.3
-
26
-
-
60349089645
-
Nucleosome positioning and gene regulation: Advances through genomics
-
Jiang, C., and Pugh, B. F. (2009) Nucleosome positioning and gene regulation: advances through genomics. Net. Rev. Genet. 10, 161-172.
-
(2009)
Net. Rev. Genet.
, vol.10
, pp. 161-172
-
-
Jiang, C.1
Pugh, B.F.2
-
27
-
-
0035929147
-
Nucleosome sliding via TBP DNA binding in vivo
-
Lomvardas, S., and Thanos, D. (2001) Nucleosome sliding via TBP DNA binding in vivo. Cell. 106, 685-696.
-
(2001)
Cell.
, vol.106
, pp. 685-696
-
-
Lomvardas, S.1
Thanos, D.2
|