Analysis of expressed sequence tags from a NaHCO3-treated alkali-tolerant plant, Chloris virgata

Plant Physiology and Biochemistry

Volumn 48, Issue 4, 2010, Pages 247-255

  Nishiuchi, Shunsaku ^a   Fujihara, Kazumasa ^a   Liu, Shenkui ^b   Takano, Tetsuo ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b NORTHEAST FORESTRY UNIVERSITY   (China)

Author keywords

cDNA library; Chloris virgata; Expressed sequence tags; Gene ontology annotation; NaHCO3 stress; Real time RT PCR

Indexed keywords

BICARBONATE;

ARTICLE; DNA SEQUENCE; DRUG EFFECT; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENE LIBRARY; GENETICS; HALOPHYTE; MOLECULAR CLONING; PHYSIOLOGICAL STRESS; PLANT GENE; POACEAE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SALT TOLERANCE; UPREGULATION;

CLONING, MOLECULAR; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION; GENE EXPRESSION REGULATION, PLANT; GENE LIBRARY; GENES, PLANT; POACEAE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SALT-TOLERANCE; SALT-TOLERANT PLANTS; SEQUENCE ANALYSIS, DNA; SODIUM BICARBONATE; STRESS, PHYSIOLOGICAL; UP-REGULATION;

CHLORIS VIRGATA;

EID: 77949487605     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plaphy.2010.01.024     Document Type: Article

References (29)

1. Akashi K., Nishimura N., Ishida Y., and Yokota A. Potent hydroxyl radical-scavenging activity of drought-induced type-2 metallothionein in wild watermelon. Biochem. Biophys. Res. Commun. 323 (2004) 72-78
2. Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., Davis A.P., Dolinski K., Dwight S.S., Eppig J.T., Harris M.A., Hill D.P., Issel-Tarver L., Kasarskis A., Lewis S., Matese J.C., Richardson J.E., Ringwald M., Rubin G.M., and Sherlock G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25 (2000) 25-29
3. Bhatnagar-Mathur P., Vadez V., and Sharma K.K. Transgenic approaches for abiotic stress tolerance in plants: retrospect and prospects. Plant Cell Rep. 27 (2008) 411-424
4. Broun P., Poindexter P., Osborne E., Jiang C.Z., and Riechmann J.L. WIN1, a transcriptional activator of epidermal wax accumulation in Arabidopsis. Proc. Natl. Acad. Sci. U S A 101 (2004) 4706-4711
5. Cobbett C., and Goldsbrough P. Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. Annu. Rev. Plant Biol. 53 (2002) 159-182
6. Conesa A., Gotz S., Garcia-Gomez J.M., Terol J., Talon M., and Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21 (2005) 3674-3676
7. Czechowski T., Stitt M., Altmann T., Udvardi M.K., and Scheible W.R. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139 (2005) 5-17
8. Houde M., Belcaid M., Ouellet F., Danyluk J., Monroy A.F., Dryanova A., Gulick P., Bergeron A., Laroche A., Links M.G., MacCarthy L., Crosby W.L., and Sarhan F. Wheat EST resources for functional genomics of abiotic stress. BMC Genomics 7 (2006) 149
9. Li C., Fang B., Yang C., Shi D., and Wang D. Effects of various salt-alkaline mixed stresses on the state of mineral elements in nutrient solutions and the growth of alkali resistant halophyte Chloris Virgata. J. Plant Nutr. 32 (2009) 1137-1147
10. Ma J., Morrow D.J., Fernandes J., and Walbot V. Comparative profiling of the sense and antisense transcriptome of maize lines. Genome Biol. 7 (2006) R22
11. Mrácek J., Greiner S., Cho W.K., Rauwolf U., Braun M., Umate P., Altstätter J., Stoppel R., Mlcochová L., Silber M.V., Volz S.M., White S., Selmeier R., Rudd S., Herrmann R.G., and Meurer J. Construction, database integration, and application of an Oenothera EST library. Genomics 88 (2006) 372-380
12. Mizuno T. Two-component phosphorelay signal transduction systems in plants: from hormone responses to circadian rhythms. Biosci. Biotechnol. Biochem. 69 (2005) 2263-2276
13. Moser C., Segala C., Fontana P., Salakhudtinov I., Gatto P., Pindo M., Zyprian E., Toepfer R., Grando M.S., and Velasco R. Comparative analysis of expressed sequence tags from different organs of Vitis vinifera L. Funct. Integr. Genomics 5 (2005) 208-217
14. Nishiuchi S., Liu S., and Takano T. Isolation and characterization of a metallothionein-1 protein in Chloris virgata Swartz that enhances stress tolerances to oxidative, salinity and carbonate stress in Saccharomyces cerevisiae. Biotechnol. Lett. 29 (2007) 1301-1305
15. + antiporters. Biochim. Biophys. Acta 1505 (2001) 144-157
16. Quackenbush J. The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acid Res. 29 (2001) 159-164
17. + ATPase gene in rice remains constitutively expressed in natural halophyte, Suaeda maritima. J. Plant Physiol. 166 (2009) 1077-1089
18. Shao H.B., Chu L.Y., Shao M.A., Jaleel C.A., and Mi H.M. Higher plant antioxidants and redox signaling under environmental stresses. C. R. Biol. 331 (2008) 433-441
19. Taji T., Seki M., Satou M., Sakurai T., Kobayashi M., Ishiyama K., Narusaka Y., Narusaka M., Zhu J.K., and Shinozaki K. Comparative genomics in salt tolerance between Arabidopsis and Arabidopsis-related halophyte salt cress using Arabidopsis microarray. Plant Physiol. 135 (2004) 1697-1709
20. Terol J., Conesa A., Colmenero J.M., Cercos M., Tadeo F., Agusti J., Alos E., Andres F., Soler G., Brumos J., Iglesias D.J., Gotz S., Legaz F., Argout X., Courtois B., Ollitrault P., Dossat C., Wincker P., Morillon R., and Talon M. Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance. BMC Genomics 8 (2007) 31
21. Tuteja N. Mechanisms of high salinity tolerance in plants. Meth. Enzymol. 428 (2007) 419-438
22. Udall J.A., Swanson J.M., Haller K., Rapp R.A., Sparks M.E., Hatfield J., Yu Y., Wu Y., Dowd C., Arpat A.B., Sickler B.A., Wilkins T.A., Guo J.Y., Chen X.Y., Scheffler J., Taliercio E., Turley R., McFadden H., Payton P., Klueva N., Allen R., Zhang D., Haigler C., Wilkerson C., Suo J., Schulze S.R., Pierce M.L., Essenberg M., Kim H., Llewellyn D.J., Dennis E.S., Kudrna D., Wing R., Paterson A.H., Soderlund C., and Wendel J.F. A global assembly of cotton ESTs. Genome Res. 16 (2006) 441-450
23. Vandesompele J., De P.K., Pattyn F., Poppe B., Van Roy N., De P.A., and Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3 (2002) RESEARCH0034
24. Wang D., Portis Jr. A.R., Moose S.P., and Long S.P. Cool C4 photosynthesis: pyruvate Pi dikinase expression and activity corresponds to the exceptional cold tolerance of carbon assimilation in Miscanthus × giganteus. Plant Physiol. 148 (2008) 557-567
25. Wang Y., Chu Y., Liu G., Wang M.H., Jiang J., Hou Y., Qu G., and Yang C. Identification of expressed sequence tags in an alkali grass (Puccinellia tenuiflora) cDNA library. J. Plant Physiol. 164 (2007) 78-89
26. 3-treated Limonium bicolor cDNA library. Plant Physiol. Biochem. 46 (2008) 977-986
27. Yadav S.K., Singla-Pareek S.L., Reddy M.K., and Sopory S.K. Transgenic tobacco plants overexpressing glyoxalase enzymes resist an increase in methylglyoxal and maintain higher reduced glutathione levels under salinity stress. FEBS Lett. 579 (2005) 6265-6271
28. Yamamoto K., and Sasaki T. Large-scale EST sequencing in rice. Plant Mol. Biol. 35 (1997) 135-144
29. Zhang X., Liu S., and Takano T. Two cysteine proteinase inhibitors from Arabidopsis thaliana, AtCYSa and AtCYSb, increasing the salt, drought, oxidation and cold tolerance. Plant Mol. Biol. 68 (2008) 131-143