메뉴 건너뛰기




Volumn 5, Issue 2, 2010, Pages

BAC-HAPPY mapping (BAP mapping): A new and efficient protocol for physical mapping

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; PLANT DNA;

EID: 77949412665     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0009089     Document Type: Article
Times cited : (8)

References (27)
  • 2
    • 52949096084 scopus 로고    scopus 로고
    • Next-generation DNA sequencing methods
    • Mardis ER (2008) Next-generation DNA sequencing methods. Annu Rev Genomics Hum Genet 9: 387-402.
    • (2008) Annu Rev Genomics Hum Genet , vol.9 , pp. 387-402
    • Mardis, E.R.1
  • 3
    • 34250873404 scopus 로고    scopus 로고
    • Sequence finishing and mapping of Drosophila melanogaster heterochromatin
    • Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, et al. (2007) Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Science 316: 1625-1628.
    • (2007) Science , vol.316 , pp. 1625-1628
    • Hoskins, R.A.1    Carlson, J.W.2    Kennedy, C.3    Acevedo, D.4    Evans-Holm, M.5
  • 4
    • 21044436749 scopus 로고    scopus 로고
    • The Tomato Sequencing Project, the First Cornerstone of the International Solanaceae Project (SOL)
    • Mueller LA, Tanksley SD, Giovannoni JJ, van Eck J, Stack S, et al. (2005) The Tomato Sequencing Project, the First Cornerstone of the International Solanaceae Project (SOL). Comp Funct Genomics 6: 153-158.
    • (2005) Comp Funct Genomics , vol.6 , pp. 153-158
    • Mueller, L.A.1    Tanksley, S.D.2    Giovannoni, J.J.3    van Eck, J.4    Stack, S.5
  • 6
    • 12444325815 scopus 로고    scopus 로고
    • Highthroughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis
    • Luo MC, Thomas C, You FM, Hsiao J, Ouyang S, et al. (2003) Highthroughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis. Genomics 82: 378-389.
    • (2003) Genomics , vol.82 , pp. 378-389
    • Luo, M.C.1    Thomas, C.2    You, F.M.3    Hsiao, J.4    Ouyang, S.5
  • 8
    • 63849091245 scopus 로고    scopus 로고
    • Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
    • Fullwood MJ, Wei CL, Liu ET, Ruan Y (2009) Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses. Genome Res 19: 521-532.
    • (2009) Genome Res , vol.19 , pp. 521-532
    • Fullwood, M.J.1    Wei, C.L.2    Liu, E.T.3    Ruan, Y.4
  • 10
    • 65249153474 scopus 로고    scopus 로고
    • Methods for generating shotgun and mixed shotgun/paired-end libraries for the 454 DNA sequencer
    • Wiley G, Macmil S, Qu C, Wang P, Xing Y, et al. (2009) Methods for generating shotgun and mixed shotgun/paired-end libraries for the 454 DNA sequencer. Curr Protoc Hum Genet Chapter 18: Unit18 11.
    • (2009) Curr Protoc Hum Genet Chapter 18: Unit18 , vol.11
    • Wiley, G.1    Macmil, S.2    Qu, C.3    Wang, P.4    Xing, Y.5
  • 11
    • 53349160131 scopus 로고    scopus 로고
    • A physical map of the 1-gigabase bread wheat chromosome 3B
    • Paux E, Sourdille P, Salse J, Saintenac C, Choulet F, et al. (2008) A physical map of the 1-gigabase bread wheat chromosome 3B. Science 322: 101-104.
    • (2008) Science , vol.322 , pp. 101-104
    • Paux, E.1    Sourdille, P.2    Salse, J.3    Saintenac, C.4    Choulet, F.5
  • 12
    • 70349575380 scopus 로고    scopus 로고
    • A physical map of the papaya genome with integrated genetic map and genome sequence
    • Yu Q, Tong E, Skelton RL, Bowers JE, Jones MR, et al. (2009) A physical map of the papaya genome with integrated genetic map and genome sequence. BMC Genomics 10: 371.
    • (2009) BMC Genomics , vol.10 , pp. 371
    • Yu, Q.1    Tong, E.2    Skelton, R.L.3    Bowers, J.E.4    Jones, M.R.5
  • 13
    • 0343986281 scopus 로고    scopus 로고
    • Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints
    • Künzel G, Korzun L, Meister A (2000) Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints. Genetics 154: 397-412.
    • (2000) Genetics , vol.154 , pp. 397-412
    • Künzel, G.1    Korzun, L.2    Meister, A.3
  • 14
    • 0032510795 scopus 로고    scopus 로고
    • Screening for overlapping bacterial artificial chromosome clones by PCR analysis with an arbitrary primer
    • Xu J, Yang D, Domingo J, Ni J, Huang N (1998) Screening for overlapping bacterial artificial chromosome clones by PCR analysis with an arbitrary primer. Proc Natl Acad Sci U S A 95: 5661-5666.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 5661-5666
    • Xu, J.1    Yang, D.2    Domingo, J.3    Ni, J.4    Huang, N.5
  • 15
    • 0024461309 scopus 로고
    • Happy mapping: A proposal for linkage mapping the human genome
    • Dear PH, Cook PR (1989) Happy mapping: a proposal for linkage mapping the human genome. Nucleic Acids Res 17: 6795-6807.
    • (1989) Nucleic Acids Res , vol.17 , pp. 6795-6807
    • Dear, P.H.1    Cook, P.R.2
  • 16
    • 0027214929 scopus 로고
    • Happy mapping: Linkage mapping using a physical analogue of meiosis
    • Dear PH, Cook PR (1993) Happy mapping: linkage mapping using a physical analogue of meiosis. Nucleic Acids Res 21: 13-20.
    • (1993) Nucleic Acids Res , vol.21 , pp. 13-20
    • Dear, P.H.1    Cook, P.R.2
  • 17
    • 0032033458 scopus 로고    scopus 로고
    • A high-resolution metric HAPPY map of human chromosome 14
    • Dear PH, Bankier AT, Piper MB (1998) A high-resolution metric HAPPY map of human chromosome 14. Genomics 48: 232-241.
    • (1998) Genomics , vol.48 , pp. 232-241
    • Dear, P.H.1    Bankier, A.T.2    Piper, M.B.3
  • 18
    • 0033676091 scopus 로고    scopus 로고
    • A high-resolution HAPPY map of Dictyostelium discoideum chromosome 6
    • Konfortov BA, Cohen HM, Bankier AT, Dear PH (2000) A high-resolution HAPPY map of Dictyostelium discoideum chromosome 6. Genome Res 10: 1737-1742.
    • (2000) Genome Res , vol.10 , pp. 1737-1742
    • Konfortov, B.A.1    Cohen, H.M.2    Bankier, A.T.3    Dear, P.H.4
  • 19
    • 0032416397 scopus 로고    scopus 로고
    • A HAPPY map of Cryptosporidium parvum
    • Piper MB, Bankier AT, Dear PH (1998) A HAPPY map of Cryptosporidium parvum. Genome Res 8: 1299-1307.
    • (1998) Genome Res , vol.8 , pp. 1299-1307
    • Piper, M.B.1    Bankier, A.T.2    Dear, P.H.3
  • 20
    • 0034760329 scopus 로고    scopus 로고
    • A clone-array pooled shotgun strategy for sequencing large genomes
    • Cai WW, Chen R, Gibbs RA, Bradley A (2001) A clone-array pooled shotgun strategy for sequencing large genomes. Genome Res 11: 1619-1623.
    • (2001) Genome Res , vol.11 , pp. 1619-1623
    • Cai, W.W.1    Chen, R.2    Gibbs, R.A.3    Bradley, A.4
  • 21
    • 67650047735 scopus 로고    scopus 로고
    • DNA Sudoku - harnessing high-throughput sequencing for multiplexed specimen analysis
    • Erlich Y, Chang K, Gordon A, Ronen R, Navon O, et al. (2009) DNA Sudoku - harnessing high-throughput sequencing for multiplexed specimen analysis. Genome Res 19: 1243-1253.
    • (2009) Genome Res , vol.19 , pp. 1243-1253
    • Erlich, Y.1    Chang, K.2    Gordon, A.3    Ronen, R.4    Navon, O.5
  • 23
    • 29144484144 scopus 로고    scopus 로고
    • Multiplexed tandem PCR: Gene profiling from small amounts of RNA using SYBR Green detection
    • Stanley KK, Szewczuk E (2005) Multiplexed tandem PCR: gene profiling from small amounts of RNA using SYBR Green detection. Nucleic Acids Research 33: e180.
    • (2005) Nucleic Acids Research , vol.33
    • Stanley, K.K.1    Szewczuk, E.2
  • 24
    • 2442679562 scopus 로고    scopus 로고
    • HAPPY mapping in a plant genome: Reconstruction and analysis of a high-resolution physical map of a 1.9 Mbp region of Arabidopsis thaliana chromosome 4
    • Thangavelu M, James AB, Bankier A, Bryan GJ, Dear PH, et al. (2003) HAPPY mapping in a plant genome: reconstruction and analysis of a high-resolution physical map of a 1.9 Mbp region of Arabidopsis thaliana chromosome 4. Plant Biotechnol J 1: 23-31.
    • (2003) Plant Biotechnol J , vol.1 , pp. 23-31
    • Thangavelu, M.1    James, A.B.2    Bankier, A.3    Bryan, G.J.4    Dear, P.H.5
  • 25
    • 0029107880 scopus 로고
    • Generation of a high-quality P1 library of Arabidopsis suitable for chromosome walking
    • Yao-Guang L, Norihiro M, Alejandro VT, Robert FW (1995) Generation of a high-quality P1 library of Arabidopsis suitable for chromosome walking. The Plant Journal 7: 351-358.
    • (1995) The Plant Journal , vol.7 , pp. 351-358
    • Yao-Guang, L.1    Norihiro, M.2    Alejandro, V.T.3    Robert, F.W.4
  • 26
    • 0026755807 scopus 로고
    • Whole genome amplification from a single cell: Implications for genetic analysis
    • Zhang L, Cui X, Schmitt K, Hubert R, Navidi W, et al. (1992) Whole genome amplification from a single cell: implications for genetic analysis. Proc Natl Acad Sci U S A 89: 5847-5851.
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 5847-5851
    • Zhang, L.1    Cui, X.2    Schmitt, K.3    Hubert, R.4    Navidi, W.5
  • 27
    • 0028881173 scopus 로고
    • Construction of genetic maps using distance geometry
    • Newell WR, Mott R, Beck S, Lehrach H (1995) Construction of genetic maps using distance geometry. Genomics 30: 59-70.
    • (1995) Genomics , vol.30 , pp. 59-70
    • Newell, W.R.1    Mott, R.2    Beck, S.3    Lehrach, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.