Paenibacillus aestuarii sp. nov., isolated from an estuarine wetland

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 3, 2010, Pages 644-647

  Bae, Jee Yeon ^a   Kim, Ki Yeon ^a   Kim, Ju Hyoung ^a   Lee, Kangseok ^a   Cho, Jang Cheon ^b   Cha, Chang Jun ^a  

^a Chung Ang University   (South Korea)

^b Inha University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; QUINONE DERIVATIVE; RNA 16S;

ARTICLE; BACTERIUM ISOLATION; CELL LEVEL; CONTROLLED STUDY; ESTUARY; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PAENIBACILLUS; PAENIBACILLUS AESTUARII; PAENIBACILLUS CHONDROITINUS; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TAXONOMY; WETLAND;

DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PAENIBACILLUS; PHYLOGENY; RIVERS; RNA, RIBOSOMAL, 16S; WETLANDS;

BACTERIA (MICROORGANISMS); PAENIBACILLUS; PAENIBACILLUS CHONDROITINUS;

EID: 77949410318     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.011544-0     Document Type: Article

References (18)

1. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequence. Int J Syst Evol Microbiol 57, 2259-2261.
2. Collins, M. D. (1985). Analysis of isoprenoid quinones. Methods Microbiol 18, 329-366.
3. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Felsenstein, J. (2005). PHYLIP (phylogeny inference package), version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
6. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
7. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
8. Kuroshima, K., Sakane, T., Takata, R. & Yokota, A. (1996). Bacillus ehimensis sp. nov. and Bacillus chitinolyticus sp. nov., new chitinolytic members of the genus Bacillus. Int J Syst Bacteriol 46, 76-80.
9. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
10. Li, D., Kim, M., Shim, W. J., Yim, U. H., Oh, J. R. & Kwon, Y.-J. (2004). Seasonal flux of nonylphenol in Han River, Korea. Chemosphere 56, 1-6.
11. Lim, J.-M., Jeon, C. O., Lee, J.-C., Xu, L.-H., Jiang, C.-L. & Kim, C.-J. (2006). Paenibacillus gansuensis sp. nov., isolated from desert soil of Gansu Province in China. Int J Syst Evol Microbiol 56, 2131-2134.
12. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
13. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athayle, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
14. Nakamura, L. K. (1987). Bacillus alginolyticus sp. nov and Bacillus chondroitinus sp. nov., two alginate-degrading species. Int J Syst Bacteriol 37, 284-286.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhart, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
17. Takeda, M., Suzuki, I. & Koizumi, J. (2005). Paenibacillus hodogayensis sp. nov., capable of degrading the polysaccharide produced by Sphaerotilus natans. Int J Syst Evol Microbiol 55, 737-741.
18. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.