Polcalcin divalent ion-binding behavior and thermal stability: Comparison of bet v 4, bra n 1. and bra n 2 to Phl p7

Biochemistry

Volumn 49, Issue 10, 2010, Pages 2256-2268

  Henzl, Michael T ^a   Davis, Meredith E ^a   Tan, Anmin ^a  

^a University of Missouri   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASPARTATES; BINDING LOOP; EF-HAND; HEAT CAPACITIES; ION-BINDING; N-TERMINAL EXTENSION; PARVALBUMIN; SIDE CHAINS; THERMAL STABILITY; TIMOTHY GRASS; WILD TYPES;

AMINO ACIDS; CALCIUM; IONS; PHOSPHATASES; PROTEINS; THERMODYNAMIC STABILITY; THERMOGRAVIMETRIC ANALYSIS;

BINDING ENERGY;

BET V 4 PROTEIN; BINDING PROTEIN; BRA N 1 PROTEIN; BRA N 2 PROTEIN; DIVALENT CATION; PARVALBUMIN; PHL P 7 PROTEIN; POLCALCIN; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; BINDING AFFINITY; BIRCH; DENATURATION; HUMAN; NONHUMAN; PHLEUM PRATENSE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN EXPRESSION; PROTEIN MOTIF; PROTEIN STRUCTURE; RAPESEED; THERMOSTABILITY;

ALLERGENS; AMINO ACID SEQUENCE; ANILINO NAPHTHALENESULFONATES; ANTIGENS, PLANT; BETULA; BRASSICA NAPUS; CALCIUM; CALCIUM-BINDING PROTEINS; CONSENSUS SEQUENCE; IONS; MOLECULAR SEQUENCE DATA; MUTATION; PROTEIN STABILITY;

BRASSICA NAPUS; PHLEUM PRATENSE;

EID: 77949381814     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi902115v     Document Type: Article

References (45)

1. Engel, E., Richter, K., Obermeyer, G., Briza, P., Kungl, A. J., Simon, B., Auer, M., Ebner, C., Rheinberger, H. J., Breitenbach, M., and Ferreira, F. (1997) Immunological and biological properties of Bet v 4, a novel birch pollen allergen with two EF-hand calcium-binding domains. J. Biol. Chem. 272, 28630-28637.
2. 2+-binding proteins (polcaicins) involved in allergy. Eur. J. Biochem. 258, 454-459.
3. Rozwadowski, K., Zhao, R., Jackman, L., Huebert, T., Burkhart, W. E., Hemmingsen, S. M., Greenwood, J., and Rothstein, S. J. (1999) Characterization and immunolocalization of a cytosolic calciumbinding protein from Brassica napus and Arabidopsis pollen. Plant Phys. 120, 787-798.
4. Suphioglu, C., Ferreira, F., and Knox, R. B. (1997) Molecular cloning and immunological characterisation of Cyn d 7, a novel calciumbinding allergen from Bermuda grass pollen. FEBS Lett. 402, 167-172.
5. 2+-binding protein, Bra r 1, in anthers and pollen tubes. Plant Cell Physiol, 40, 1243-1252.
6. Hayek, B., Vangelista, L., Pastore, A., Sperr, W. R., Valent, P., Vrtala, S., Niederberger, V., Twardosz, A., Kraft, D., and Valenta, R. (1998) Molecular and immunologic characterization of a highly cross-reactive two EF-hand calcium-binding alder pollen allergen, Aln g 4: structural basis for calcium-modulated IgE recognition. J. Immunol. 161, 7031-7039.
7. Niederberger, V., Hayek, B., Vrtala, S., Laffer, S., Twardosz, A., Vangelista, L., Sperr, W. R., Valent, P., Rumpold, H., Kraft, D., Ehrenberger, K., Valenta, R., and Spitzauer, S. (1999) Calciumdependent immunoglobulin E recognition of the apo- and calciumbound form of a cross-reactive two EF-hand timothy grass pollen allergen, Phl p 7. FASEB J. 13, 843-856.
8. Twardosz, A., Hayek, B., Seiberler, S., Vangelista, L., Elfman, L., Gronlund, H., Kraft, D., and Valenta, R. (1997) Molecular characterization, expression in Escherichia coli, and epitope analysis of a two EF-hand calcium-binding birch pollen allergen, Bet v 4. Biochem. Biophys. Res, Commun. 239, 197-204.
9. Celio, M. R., Pauls, T., and Schwaller, B. (1996) Guidebook to the Calcium-Binding Proteins, Oxford University Press, New York.
10. Kretsinger, R. H. (1980) Structure and evolution of calcium-modulated proteins. CRC Cril, Rev. Biochem, 8, 119-174.
11. Kawasaki, H., and Kretsinger, R. H. (1995) Calcium-binding proteins 1 : EF-hands. Protein Profile 2, 297-490.
12. Kretsinger, R. H., and Nockolds, C. E. (1973) Carp muscle calciumbinding protein. II. Structure determination and general description. J. Biol. Chem. 248, 3313-3326.
13. McPhalen, C. A., Strynadka, N. C. J., and James, M. N. G. (1991) Calcium-binding sites in proteins: a structural, perspective. Adv. Protein Chem. 42, 77-144.
14. Henzl, M. T., Davis, M. E., and Tan, A. (2008) Divalent ion binding properties of the timothy grass allergen, Phl p 7. Biochemistry 47, 7846-7856.
15. 2-. Biochemistry 35, 5856-5869.
16. Henzl, M. T., Agah, S., and Larson, J. D. (2004) Rat α- and βparvalbumins: comparison of their pentacarboxylate and site-interconversion variants. Biochemistry 43, 9307-9319.
17. Weber, G., and Young, L. (1964) Fragmentation of bovine serum albumin, by pepsin. I. The origin of the acid expansion of the albumin molecule. J. Biol. Chem. 239, 1415-1423.
18. Warren, J. R., and Gordon, J. A. (1966) On the refractive indices of aqueous solutions of urea. J. Phys. Chem, 70, 297-300.
19. Perkins, S. J. (1986) Protein volumes and hydration effects: the calculations of partial specific volumes, neutron, scattering matchpoints and 280-nm absorption coefficients for proteins and glycoproteins from amino acid sequences. Eur. J. Biochem, 157, 169-180.
20. 2+ ions from parvalbumin. Anal. Biochem. 138, 229-234.
21. Henzl, M. T., Agah, S., and Larson, J. D. (2003) Characterization of the metal ion-binding domains from rat α- and β-parvalbumins. Biochemistry 42, 3594-3607.
22. Bevington, P. R., and Robinson, D. K. (1992) Data Reduction and Error Analysis for the Physical Sciences, 2nd ed., McGraw-Hill, Boston, MA.
23. 2+-binding constants by global leastsquares analysis of isothermal titration calorimetry data. Anal. Biochem, 319, 216-233.
24. Henzl, M. T., Larson, J. D., and Agah, S. (2004) Influence of monovalent cation identity on parvalbumin divalent ion-binding properties. Biochemistry. 43, 2747-2763.
25. Henzl, M. T. (2009) Characterization of parvalbumin and polcalcin divalent ion binding by isothermal titration, calorimetry. Methods Enzymol. 455, 259-296.
26. Henzl, M, T., and Ndubuka, K. (2007) Low-affinity signature of the rat β-parvalbumin CD site. Evidence for remote determinants. BioChemistry 46, 23-35.
27. Pace, C. N., and Laurents, D. V. (1989) A new method for determining the heat capacity change for protein folding. Biochemistry 28, 2520-2525.
28. McCrary, B. S., Edmondson, S. P., and Shriver, J. W. (1996) Hyperthermophile protein folding thermodynamics: differential scanning calorimetry and chemical denaturation of Sac7d. J. Mol. Biol. 264, 784-805.
29. Santoro, M. M., and Bolen, D. W. (1988) Unfolding free energy changes determined by the linear extrapolation, method. 1. Unfolding of phenylmethanesulfonyl a-chymotrypsin using different denaturants. Biochemistry 27, 8063-8068.
30. Neudecker, P., Nerkamp, J., Eisenmann, A., Nourse, A., Lauber, T., Schweriner, K., Lehmann, K., Schwarzinger, S., Ferreira, F., and Rosch, P. (2004) Solution structure, dynamics, and hydrodynamics of the calcium-bound cross-reactive birch pollen allergen. Bet v 4 reveal a canonical monomeric two EF-hand assembly with a regulatory function. J. Mol. Biol. 336, 1141-1157.
31. Verdino, P., Westritschnig, K., Valenta, R., and Keller, W. (2002) The cross-reactive calcium-binding pollen allergen, Phl p 7, reveals a novel, dimer assembly. EMBO J. 21, 5007-5016.
32. Lee, Y. H., Tanner, J. J., Larson, J. D., and Henzl, M. T. (2004) Crystal structure of a high-affinity variant of rat α-parvalbumin. Biochemistry 43, 10008-10017.
33. Reid, R. E., and Hodges, R. S. (1980) Co-operativity and calcium/ magnesium binding to troponin C and muscle calcium binding parvalbumin: an hypothesis. J. Theor. Biol. 84, 401-444.
34. Reid, R. E. (1990) Synthetic fragments of calmodulin calcium-binding site III. A. test for the acid-pair hypothesis. J. Biol. Chem. 265, 5971-5976.
35. Procyshyn, R. M., and Reid, R. E. (1994) A structure/activity study of calcium affinity and selectivity using a synthetic peptide model of the helix-loop-helix calcium-binding motif. J. Biol Chem. 269, 1641-1647.
36. Matulis, D., and Lovrien, R. (1998) l-Anilino-8-naphthalene sulfonate anion-protein binding depends primarily on ion pair formation. Biophys. J. 74, 422-429.
37. Ory, J. J., and Banaszak, L. J. (1999) Studies of the ligand binding reaction of adipocyte lipid binding protein, using the fluorescent probe l-anilinonaphthalene-8-sulfonate. Biophys. J. 77, 1107-1116.
38. Schonbrunn, E., Eschenburg, S., Luger, K., Kabsch, W., and Amrhein, N. (2000) Structural basis for the interaction of the fluorescence probe 8-anilino-l-naphthalene sulfonate (ANS) with the antibiotic target MurA. Proc Natl. Acad, Sci, U.S.A. 97, 6345-6349.
39. Lartigue, A., Gruez, A., Spinelli, S., Riviere, R., Brossut, R., Tegoni, M., and Cambillau, C. (2003) The crystal structure of a cockroach pheromone-binding protein suggests a new binding and release mechanism. J., Biol. Chem. 278, 30213-30218.
40. Xie, D., and Freire, E. (1994) Structure based prediction of protein folding intermediates. J. Mol. Biol. 242, 62-80.
41. Hollien, J., and Marqusee, S. (1999) A thermodynamic comparison of mesophilic and thermophilic ribonucleases H. Biochemistry 38, 3831-3836.
42. Deutschman, W. A., and Dahlquist, F. W. (2001) Thermodynamic basis for the increased thermostability of CheY from the hyperthermophile Thermotoga maritima. Biochemistry 40, 13107-13113.
43. Robic, S., Guzman-Casado, M., Sanchez-Ruiz, J. M., and Marqusee, S. (2003) Role of residual structure in the unfolded state of a thermophilic protein Proc. Natl. Acad Sci., U.S.A- 110, 11345-11349.
44. Shortle, D., and Ackerman, M. S. (2001) Persistence of native-like topology in a denatured protein, in 8 M urea. Science 293, 487-489.
45. Klein-Seetharaman, J., Oikawa, J., Grimshaw, S. B., Winner, J., Duchardt, E., Ueda, T., Imoto, T., Smith, L. J., Dobson, C. M., and Schwalbe, H. (2002) Long-range interactions within, a nonnative protein. Science 295. 1719-1722.