Preliminary investigation on reliability of genomic estimated breeding values in the Danish Holstein population

Journal of Dairy Science

Volumn 93, Issue 3, 2010, Pages 1175-1183

  Su, G ^a   Guldbrandtsen, B ^a   Gregersen, V R ^a   Lund, M S ^a  

^a DANISH INSTITUTE OF AGRICULTURAL SCIENCES   (Denmark)

Author keywords

Cross validation; Genomic estimated breeding value; Genomic selection; Reliability

Indexed keywords

ANIMAL; ARTICLE; BIOLOGICAL MODEL; BREEDING; CATTLE; DENMARK; GENETICS; GENOME; GENOTYPE; MALE;

ANIMALS; BREEDING; CATTLE; DENMARK; GENOME; GENOTYPE; MALE; MODELS, GENETIC;

HUMAN HERPESVIRUS 4;

EID: 77949325983     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2009-2192     Document Type: Article

References (21)

1. Berry D.P., Kearney F., Harris B.F. Genomic selection in Ireland. Proc. Interbull Workshop of Genomic Information in Genetic Evaluations, Uppsala, Sweden 2009, 29-34.
2. Cole J.B., VanRaden P.M., O'Connell J.R., Van Tassell C.P., Sonstegard T.S., Schnabel R.D., Taylor J.F., Wiggans G.R. Distribution and location of genetic effects for dairy traits. J. Dairy Sci. 2009, 92:2931-2946.
3. Danish Cattle Federation. 2006. Principles of Danish Cattle Breeding. 8th ed. The Danish Agricultural Advisory Centre, Aarhus, Denmark. Accessed May 15, 2009. http://www.landbrugsinfo.dk/Kvaeg/Avl/Sider/principles.pdf.
4. de Roos A.P.W., Schrooten C., Mullaart E., Van der Beek S., De Jong G., Voskamp W. Genomic selection at CRV. Proc 2009, 47-50. Interbull Workshop of Genomic Information in Genetic Evaluations, Uppsala, Sweden. Interbull Bulletin 39. Interbull, Uppsala, Sweden.
5. George E.I., McCulloch R.E. Variable selection via Gibbs sampling. J. Am. Stat. Assoc. 1993, 88:881-889.
6. Gianola D., Fernando R., Stella A. Genomic-assisted prediction of genetic value with semiparametric procedures. Genetics 2006, 173:1761-1776.
7. González-Recio O., Gianola D., Rosa G.J., Weigel K.A., Kranis A. Genome-assisted prediction of a quantitative trait measured in parents and progeny: Application to food conversion rate in chickens. Genet. Sel. Evol. 2009, 41:3. doi: 10.1186/1297-9686-41-3.
8. Harris B.L., Johnson D.L, Spelman R.J Genomic selection in New Zealand and the implications for national genetic evaluation. Proc. Interbull Meeting, Niagara Falls, NY 2008, Interbull, Uppsala, Sweden.
9. Hayes B.J., Bowman P.J., Chamberlain A.J., Goddard M.E. Invited review: Genomic selection in dairy cattle: Progress and challenges. J. Dairy Sci. 2009, 92:433-443.
10. Hayes B., Goddard M.E. The distribution of the effects of genes affecting quantitative traits in livestock. Genet. Sel. Evol. 2001, 33:209-229.
11. Jagdish K.P., Campbell B.R. Handbook of the Normal Distribution 1996, Marcel Dekker Inc., New York, NY. 2nd ed.
12. Lande R., Thompson R. Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 1990, 124:743-756.
13. Lund M.S., Sahana G., de Koning D.-J., Su G, Carlborg Ö. Comparison of analysis of the QTLMAS XII common dataset. I. Genomic selection. BMC Proc. 2009, 3(Suppl. 1):S1.
14. Meuwissen T.H.E., Goddard M.E. The use of marker haplotypes in animal breeding schemes. Genet. Sel. Evol. 1996, 28:161-176.
15. Meuwissen T.H.E., Goddard M.E. Mapping multiple QTL using linkage disequilibrium and linkage analysis information and multitrait data. Genet. Sel. Evol. 2004, 36:261-279.
16. Meuwissen T.H.E., Hayes B.J., Goddard M.E. Prediction of total genetic value using genome-wide dense marker maps. Genetics 2001, 157:1819-1829.
17. Schaeffer L.R. Strategy for applying genome-wide selection in dairy cattle. J. Anim. Breed. Genet. 2006, 123:218-223.
18. VanRaden P.M. Efficient methods to compute genomic predictions. J. Dairy Sci. 2008, 91:4414-4423.
19. VanRaden P.M., Van Tassell C.P., Wiggans G.R., Sonstegard T.S., Schnabel R.D., Taylor J.F., Schenkel F.S. Invited review: Reliability of genomic predictions for North American Holstein bulls. J. Dairy Sci. 2009, 92:16-24.
20. Villumsen T.M., Janss L., Lund M.S. The importance of haplotype length and heritability using genomic selection in dairy cattle. J. Anim. Breed. Genet. 2009, 126:3-13.
21. Xu S. Estimating polygenic effects using markers of the entire genome. Genetics 2003, 163:789-801.