Role of an RNA polymerase interacting protein, MsRbpA, from Mycobacterium smegmatis in phenotypic tolerance to rifampicin

Microbiology

Volumn 156, Issue 3, 2010, Pages 873-883

  Dey, Abhinav ^a   Verma, Amit Kumar ^a   Chatterji, Dipankar ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; PROTEIN RBPA; RIFAMPICIN; RNA POLYMERASE; UNCLASSIFIED DRUG;

ANTIBIOTIC SENSITIVITY; ARTICLE; ENZYME ACTIVITY; IN VITRO STUDY; IN VIVO STUDY; MYCOBACTERIUM SMEGMATIS; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; STREPTOMYCES COELICOLOR;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; COMPUTATIONAL BIOLOGY; CROSS-LINKING REAGENTS; DNA-DIRECTED RNA POLYMERASES; DRUG RESISTANCE, BACTERIAL; GENE EXPRESSION REGULATION, BACTERIAL; INHIBITORY CONCENTRATION 50; MICROBIAL SENSITIVITY TESTS; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM SMEGMATIS; RIFAMPIN; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION, GENETIC;

MYCOBACTERIUM SMEGMATIS; PROKARYOTA; STREPTOMYCES COELICOLOR;

EID: 77749301874     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.033670-0     Document Type: Article

References (22)

1. Artsimovitch, I., Vassylyeva, M. N., Svetlov, D., Svetlov, V., Perederina, A., Igarashi, N., Matsugaki, N., Wakatsuki, S., Tahirov, T. H. & Vassylyev, D. G. (2005). Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcriptional control by rifamycins. Cell 122, 351-363.
2. B-dependent general and multiple stress response. J Bacteriol 184, 459-467.
3. F. J Bacteriol 189, 8973-8981.
4. Fla° tten, I., Morigen & Skartstad, K. (2009). DnaA protein interacts with RNA polymerase and partially protects it from the effect of rifampicin. Mol Microbiol 71, 1018-1030.
5. Gentry, D. R. & Burgess, R. R. (1993). Cross-linking of Escherichia coli RNA polymerase subunits: identification of β' as the binding site for ω. Biochemistry 32, 11224-11227.
6. Hu, Y., Mangan, J., Dhillon, J., Sole, K., Mitchison, D., Butcher, P. & Coates, A. (2000). Detection of m-RNA transcripts and active transcription in persistent Mycobacterium tuberculosis induced by exposure to rifampin and pyrazinamide. J Bacteriol 182, 6358-6365.
7. Jain, V., Sujatha, S., Ojha, A. K. & Chatterji, D. (2005). Identification and characterization of rel promoter element of Mycobacterium tuberculosis. Gene 351, 149-157.
8. Jin, D. J. & Gross, C. A. (1988). Mapping and sequencing of mutations in the Escherichia coli rpoB gene that lead to rifampicin resistance. J Mol Biol 202, 45-58.
9. Kumar, M. & Chatterji, D. (2008). Cyclic di-GMP: a second messenger required for long-term survival, but not for biofilm formation, in Mycobacterium smegmatis. Microbiology 154, 2942-2955.
10. Mackay, J. P., Sunde, M., Lowry, J. A., Crossley, M. & Matthews, J. M. (2007). Protein interactions: is seeing believing? Trends Biochem Sci 32, 530-531.
11. Mathew, R., Ramakanth, M. & Chatterji, D. (2005). Deletion of the gene rpoZ, encoding the ω subunit of RNA polymerase, in Mycobacterium smegmatis results in fragmentation of the β' subunit in the enzyme assembly. J Bacteriol 187, 6565-6570.
12. Miller, L. P., Crawford, J. T. & Shinnick, T. M. (1994). The rpoB gene of Mycobacterium tuberculosis. Antimicrob Agents Chemother 38, 805-811.
13. Mukherjee, R. & Chatterji, D. (2008). Stationary phase induced alterations in mycobacterial RNA polymerase assembly: a cue to its phenotypic resistance towards rifampicin. Biochem Biophys Res Commun 369, 899-904.
14. Murphy, D. J. & Brown, J. R. (2007). Identification of gene targets against dormant phase Mycobacterium tuberculosis infections. BMC Infect Dis 7, 84.
15. Newell, K. V., Thomas, D. P., Brekasis, D. & Paget, M. S. B. (2006). The RNA polymerase-binding protein RbpA confers basal levels of rifampicin resistance on Streptomyces coelicolor. Mol Microbiol 60, 687-696.
16. Nguyen, L. & Thompson, C. J. (2006). Foundations of antibiotic resistance in bacterial physiology: the mycobacterial paradigm. Trends Microbiol 14, 304-312.
17. R regulon. Mol Microbiol 42, 1007-1020.
18. Sassetti, C. M., Boyd, D. H. & Rubin, E. J. (2003). Genes required for mycobacterial growth defined by high density mutagenesis. Mol Microbiol 48, 77-84.
19. Triccas, J. A., Parish, T., Britton, W. J. & Gicquel, B. (1998). An inducible expression system permitting efficient purification of recombinant antigen from Mycobacterium smegmatis. FEMS Microbiol Lett 167, 151-156.
20. Villain-Guillot, P., Bastide, L., Gualtieri, M. & Leonetti, J. P. (2007). Progress in targeting bacterial transcription. Drug Discov Today 12, 200-208.
21. Wayne, L. G. & Hayes, L. G. (1996). An in vitro model for sequential study of shiftdown of Mycobacterium tuberculosis through two stages of nonreplicating persistence. Infect Immun 64, 2062-2069.
22. 32-dependent promoters by rifampicin. FEBS Lett 440, 172-174.