Molecular and genetic analyses of four nonfunctional S haplotype variants derived from a common ancestral S haplotype identified in sour cherry (Prunus cerasus L.)

Genetics

Volumn 184, Issue 2, 2010, Pages 411-427

  Tsukamoto, Tatsuya ^a,c   Hauck, Nathanael R ^a,d   Tao, Ryutaro ^b   Jiang, Ning ^a   Iezzoni, Amy F ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b KYOTO UNIVERSITY   (Japan)

^c UNIVERSITY OF ARIZONA   (United States)

^d BUTLER UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

F BOX PROTEIN; GENOMIC DNA; MESSENGER RNA; MOLECULAR MARKER; PLANT DNA; PLANT RNA; POLYADENYLATED RNA; RIBONUCLEASE; RIBONUCLEASE S; S HAPLOTYPE SPECIFIC F BOX PROTEIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; GAMETE; GENE EXPRESSION; GENE LIBRARY; GENETIC ANALYSIS; GENETIC CROSS; GENETIC VARIABILITY; GENOTYPE; HAPLOTYPE; LOSS OF FUNCTION MUTATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLANT GENE; POLLINATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PRUNUS; PRUNUS CERASUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; S RNASE GENE; SELF COMPATIBILITY; SELF INCOMPATIBILITY; SELFING; SEQUENCE ALIGNMENT; SFB GENE; SOUTHERN BLOTTING; UNINDEXED SEQUENCE;

AMINO ACID SEQUENCE; BASE SEQUENCE; F-BOX PROTEINS; GENETIC VARIATION; HAPLOTYPES; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; PRUNUS; RIBONUCLEASES; SEQUENCE HOMOLOGY;

PRUNUS; PRUNUS CERASUS; SOLANACEAE;

EID: 77749292921     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.109.109728     Document Type: Article

References (42)

1. BEAVER, J. A., and A. F. IEZZONI, 1993 Allozyme inheritance in tetraploid sour cherry (Prunus cerasus L.). J. Am. Soc. Hortic. Sci. 118: 873-877.
2. BOŠKOVIĆ, R. I., and K. R. TOBUTT, 2001 Genotyping cherry cultivars assigned to incompatibility groups by analyzing stylar ribonucleases. Theor. Appl. Genet. 103: 475-485.
3. BOŠKOVIĆ, R. I., B. WOLFRAM, K. R. TOBUTT, R. CEROVIC and T. SONNEVELD, 2006 Inheritance and interaction of incompatibility alleles in the tetraploid sour cherry. Theor. Appl. Genet. 112: 315-326.
4. DE NETTANCOURT, D., 2001 Incompatibility and Incongruity in Wild and Cultivated Plants. Springer-Verlag, Berlin.
5. ENTANI, T., M. IWANO, H. SHIBA, F.-S. CHE, A. ISOGAI et al., 2003 Comparative analysis of the self-incompatibility (S-) locus region of Prunus mume: identification of a pollen-expressed F-box gene with allelic diversity. Genes Cells 8: 203-213.
6. GOLZ, J. F., V. SU, A. E. CLARKE and E. NEWBIGIN, 1999 A molecular description of mutations affecting the pollen component of the Nicotiana alata S locus. Genetics 152: 1123-1135.
7. GOLZ, J. F., H.-Y. OH, V. SU, M. KUSABA and E. NEWBIGIN, 2001 Genetic analysis of Nicotiana pollen-part mutants is consistent with the presence of an S-ribonuclease inhibitor at the S locus. Proc. Natl. Acad. Sci. USA 98: 15372-15376.
8. HAUCK, N. R., A. F. IEZZONI, H. YAMANE and R. TAO, 2001 Revisiting the S-allele nomenclature in sweet cherry (Prunus avium L.) using RFLP profiles. J. Am. Soc. Hortic. Sci. 126: 654-660.
9. HAUCK, N. R., H. YAMANE, R. TAO and A. F. IEZZONI, 2002 Self-compatibility and incompatibility in tetraploid sour cherry (Prunus cerasus L.). Sex. Plant Reprod. 15: 39-46.
10. 1-haplotype in sour cherry has an altered S-haplotype specific F-box protein gene. J. Hered. 97: 514-520.
11. HAUCK, N. R., H. YAMANE, R. TAO and A. F. IEZZONI, 2006b Accumulation of nonfunctional S-haplotypes results in the breakdown of gametophytic self-incompatibility in tetraploid Prunus. Genetics 172: 1191-1198.
12. HUANG, S.-X., H.-Q. WU, Y.-R. LI, J. WU, S.-J. ZHANG et al., 2008 Competitive interaction between two functional S-haplotypes confers self-compatibility on tetraploid Chinese cherry (Prunus pseudocerasus Lindl. CV. Nanjing Chuisi). Plant Cell Rep. 27: 1075-1085.
13. IKEDA, K., B. IGIC, K. USHIJIMA, H. YAMANE, N. R. HAUCK et al., 2004a Primary structural features of the S haplotype-specific F-box protein, SFB, in Prunus. Sex. Plant Reprod. 16: 235-243.
14. 4'-haplotype, a pollen-part mutant in sweet cherry (Prunus avium L.). J. Am. Soc. Hortic. Sci. 129: 724-728.
15. IKEDA, K., K. USHIJIMA, H. YAMANE, R. TAO, N. R. HAUCK et al.,2005 Linkage and physical distances between the S-haplotype S-RNase and SFB genes in sweet cherry. Sex. Plant Reprod. 17: 289-296.
16. KAPITONOV, V. V., and J. JURKA, 2001 Rolling-circle transposons in eukaroyotes. Proc. Natl. Acad. Sci. USA 98: 8714-8719.
17. KONIECZNY, A. and F. AUSUBEL, 1993 A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J. 4: 403-410.
18. LAI, Z., W. MA, B. HAN, L. LIANG, Y. ZHANG et al., 2002 An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum. Plant Mol. Biol. 50: 29-42.
19. LEWIS, D., 1943 Physiology of incompatibility in plants. III. Autotetraploids. J. Genet. 45: 171-185.
20. MCCLURE, B., 2009 Darwin's foundation for investigating self-incompatibility and the progress toward a physiological model for S-RNase-based SI. J. Exp. Bot. 60: 1069-1081.
21. NEFF, M. M., J. D. NEFF, J. CHORY and A. E. PEPPER, 1998 dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J. 14: 387-392.
22. NEFF, M. M., E. TURK and M. KALISHMAN, 2002 Web-based primer design for single nucleotide polymorphism analysis. Trends Genet. 18: 613-615.
23. NUNES, M. D. S., R. A. M. SANTOS, S. M. FERREIRA, J. VIEIRA and C. VIEIRA, 2006 Variability patterns and positively selected sites at the gametophytic self-incompatibility pollen SFB gene in a wild self-incompatible Prunus spinosa (Rosaceae) population. New Phytol. 172: 577-587.
24. OLDEN, E. J., and N. NYBOM, 1968 On the origin of Prunus cerasus L. Hereditas 59: 327-345.
25. SHERMAN-BROYLES, S., N. BOGGS, A. FARKAS, P. LIU, J. VREBALOV et al., 2007 S locus genes and the evolution of self-fertility in Arabidopsis thaliana. Plant Cell 19: 94-106.
26. SIJACIC, P., X. WANG, A. L. SKIRPAN, Y. WANG, P. E. DOWD et al., 2004 Identification of the pollen determinant of S-RNase-mediated self-incompatibility. Nature 429: 302-305.
27. STOCKINGER, E. J., C. A. MULINIX, C.M. LONG, T. S. BRETTIN and A. F. IEZZONI, 1996 A linkage map of sweet cherry based on RAPD analysis of a microspore-derived callus culture population. J. Hered. 87: 214-218.
28. TAO, R., H. YAMANE, A. SUGIURA, H. MURAYAMA, H. SASSA et al., 1999 Molecular typing of S-alleles through identification, characterization and cDNA cloning for S-RNases in sweet cherry. J. Am. Soc. Hortic. Sci. 124: 224-233.
29. TOBUTT, K. R., R. BOŠKOVIĆ, R. CEROVIC, T. SONNEVELD and D. RUZIC, 2004 Identification of incompatibility alleles in tetraploid species sour cherry. Theor. Appl. Genet. 108: 775-785.
30. TSUKAMOTO, T., T. ANDO, H. WATANABE, E. MARCHESI and T.-H. KAO, 2005 Duplication of the S-locus F-box gene is associated with breakdown of pollen function in an S-haplotype identified in a natural population of self-incompatible Petunia axillaris. Plant Mol. Biol. 57: 141-153.
31. TSUKAMOTO, T., N. R. HAUCK, R. TAO, N. JIANG and A. F. IEZZONI, 2006 Molecular characterization of three non-functional S-haplotypes in sour cherry (Prunus cerasus). Plant Mol. Biol. 62: 371-383.
32. TSUKAMOTO, T., D. POTTER, R. TAO, C. P. VIEIRA, J. VIEIRA et al., 2008 Genetic and molecular characterization of three novel S-haplotypes in sour cherry (Prunus cerasus L.). J. Exp. Bot. 59: 3169-3185.
33. USHIJIMA, K., H. SASSA, R. TAO, H. YAMANE, A. M. DANDEKAR et al., 1998 Cloning and characterization of cDNAs encoding S-RNases in almond (Prunus dulcis): primary structure features and sequence diversity of the S-RNases in Rosaceae. Mol. Gen. Genet. 260: 261-268.
34. USHIJIMA, K., H. SASSA, M. TAMURA, M. KUSABA, R. TAO et al., 2001 Characterization of the S-locus region of almond (Prunus dulcis): analysis of a somaclonal mutant and a cosmid contig for an S haplotype. Genetics 158: 370-386.
35. USHIJIMA, K., H. SASSA, A. M. DANDEKAR, T. M. GRADZIEL, R. TAO et al., 2003 Structural and transcriptional analysis of the selfincompatibility locus of almond: identification of a pollenexpressed F-box gene with haplotype-specific polymorphism. Plant Cell 15: 771-781.
36. USHIJIMA, K., H. YAMANE, A. WATARI, E. KAKEHI, K. IKEDA et al., 2004 The S haplotype-specific F-box protein gene, SFB, is defective in self-compatible haplotypes of Prunus avium and P. mume. Plant J. 39: 573-586.
37. VAUGHAN, S. P., R. I. BOŠKOVIĆ, A. GISBERT-CLIMENT, K. RUSSELL and K. R. TOBUTT, 2008 Characterization of novel S-alleles from cherry (Prunus avium L.). Tree Genet. Genomes 4: 531-541.
38. XUE, Y., Y. ZHANG, Q. YANG, Q. LI, Z. CHENG et al., 2009 Genetic features of a pollen-part mutation suggest an inhibitory role for the Antirrhinum pollen self-incompatibility determinant. Plant Mol. Biol. 70: 499-509.
39. YAMANE, H., R. TAO, A. SUGIURA, N. R. HAUCK and A. F. IEZZONI, 2001 Identification and characterization of S-RNases in tetraploid sour cherry (Prunus cerasus). J. Am. Soc. Hortic. Sci. 126: 661-667.
40. 6-haplotypes of sour cherry (Prunus cerasus) contains a functional pollen S allele and a non-functional pistil S allele. J. Exp. Bot. 54: 2431-2434.
41. YAMANE, H., K. IKEDA, K. USHIJIMA, H. SASSA and R. TAO, 2003b A pollen-expressed gene for a novel protein with an F-box motif that is very tightly linked to a gene for S-RNase in two species of cherry, Prunus cerasus and P. avium. Plant Cell Physiol. 44: 764-769.
42. YAMANE, H., K. USHIJIMA, H. SASSA and R. TAO, 2003c The use of S haplotype-specific F-box protein gene, SFB, as a molecular marker for S-haplotypes and self-compatibility in Japanese apricot (Prunus mume). Theor. Appl. Genet. 107: 1357-1361.