Phylogeography of Potentilla fruticosa, an alpine shrub on the Qinghai-Tibetan Plateau

Journal of Plant Ecology

Volumn 3, Issue 1, 2010, Pages 9-15

  Li, Cui ^a,b   Shimono, Ayako ^a   Shen, Haihua ^a   Tang, Yanhong ^a  

^a NATIONAL INSTITUTE FOR ENVIRONMENTAL STUDIES   (Japan)

^b SHANXI UNIVERSITY OF FINANCE AND ECONOMICS   (China)

Author keywords

Alpine plants; Climatic changes; CpDNA; Qinghai; Tibet

Indexed keywords

POTENTILLA; POTENTILLA FRUTICOSA;

EID: 77649306810     PISSN: 17529921     EISSN: 1752993X     Source Type: Journal    
DOI: 10.1093/jpe/rtp022     Document Type: Article

References (43)

1. Afzal-Rafii Z, Dodd RS (2007) Chloroplast DNA supports a hypothesis of glacial refugia over postglacial recolonization in disjunct populations of black pine (Pinus nigra) in western Europe. Mol Ecol 16:723-736
2. Bartish IV, Kadereit JW, Comes HP (2006) Late Quaternary history of Hippophaë rhamnoides L. (Elaeagnaceae) inferred from chalcone synthase intron (Chsi) sequences and chloroplast DNA variation. Mol Ecol 15:4065-4083
3. Bennett KD (1997) Evolution and Ecology: The Pace of Life. Cambridge, UK: Cambridge University Press.
4. Bennett KD, Tzedakis PC, Willis KJ (1991) Quaternary refugia of north European trees. J Biogeogr 18:103-115
5. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9:1657-1659
6. Demesure B, Comps B, Petit RJ (1996) Chloroplast DNA phylogeography of the common beech (Fagus sylvatica) in Europe. Evolution 50:2515-2520
7. Du FK, Petit RJ, Liu JQ (2009) More introgression with less gene flow: chloroplast vs. mitochondrial DNA in the Picea asperata complex in China, and comparison with other Conifers. Mol Ecol 18:1396-1407
8. Felsenstein J (2004) PHYLIP (Phylogeny Inference Package) Version 3.6. Distributed by the author. Seattle: Department of Genome Sciences, University of Washington.
9. Fort M(1996) Late Cenozoic environmental changes and uplift on the northern side of the central Himalaya: a reappraisal from field data. Palaeogeogr Palaeoclimatol Palaeoecol 120:123-145
10. Fujii N, Tomaru N, Okuyama K, et al. (2002) Chloroplast DNA phylogeography of Fagus crenata (Fagaceae) in Japan. Plant Syst Evol 232:21-33.
11. Grivet D, Petit RJ (2003) Chloroplast DNA phylogeography of the hornbeam in Europe: evidence for a bottleneck at the outset of postglacial colonization. Conserv Genet 4:47-56.
12. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
13. Hamilton MB (1999) Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Mol Ecol 8:521-523
14. Harpending HC (1994) Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Hum Biol 66:591-600.
15. Heuertz M, Fineschi S, Anzidei M, et al. (2004) Chloroplast DNA variation and postglacial recolonization of common ash (Fraxinus excelsior L.) in Europe. Mol Ecol 13:3437-3452
16. Hewitt GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biol J Linn Soc 58:247-276
17. HewittGM(2000) The genetic legacy of the quaternary ice ages. Nature 405:907-913
18. Hewitt GM (2004) Genetic consequences of climatic oscillations in the quaternary. Phil Trans R Soc Lond B Biol Sci 359:183-195
19. Ikeda H, Setoguchi H (2007) Phylogeography and refugia of the Japanese endemic alpine plant, Phyllodoce nipponica Makino (Ericaceae). J Biogeogr 34:169-176 (Pubitemid 44952538)
20. King RA, Ferris C (1998) Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Mol Ecol 7:1151-1161
21. Kwan HK, Choung ML, Liu T, et al. (1996) Gravel deposits on the margins of the Qinghai-Xizang Plateau, and their environmental significance. Palaeogeogr Palaeoclimatol Palaeoecol 120:159-170
22. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321-4325
23. Qu YH, Ericson PGP, Lei FM, et al. (2005) Postglacial colonization of the Tibetan plateau inferred from the matrilineal genetic structure of the endemic red-necked snow finch, Pyrgilauda ruficollis. Mol Ecol 14:1767-1781
24. Rogers AR (1995) Genetic evidence for a pleistocene population explosion. Evolution 49:608-615
25. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9: 552-569
26. Rowe KC, Heske EJ, Brown PW, et al. (2004) Surviving the ice: northern refugia and postglacial colonization. Proc Natl Acad Sci U S A 101:10355-10359
27. Schneider S, Roessli D, Excoffier L (2000) Arlequin Version 2.000: A Software for Population Genetics Data Analysis. Geneva, Switzerland: Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva.
28. Schö nswetter P, Stehlik I, Holderegger R, et al. (2005) Molecular evidence for glacial refugia of mountain plants in the Europe Alps. Mol Ecol 14:3547-3555
29. Schö nswetter P, Tribsch A, Barfuss M, et al. (2002) Several Pleistocene refugia detected in the high alpine plant Phyteuma globulariifolium Sternb. & Hoppe (Campanulaceae) in the European Alps. Mol Ecol 11:2637-2647
30. Shackleton NJ, Opdyke ND (1973) Oxygen isotope and palaeomagnetic stratigraphy of equatorial Pacific core V28-238: oxygen isotope temperatures and ice volumes on a 105 and 106 year scale. Quaternary Res 3:39-55.
31. Shi YF (2002) Characteristics of late Quaternary monsoonal glaciation on the Tibetan Plateau and in East Asia. Quatern Int 97-98:79-91.
32. Shi YF, Li JJ, Li BY (1998) Uplift and Environmental Changes of Qinghai-Tibetan Plateau in the Late Cenozoic. Guangzhou, China: Guangdong Science and Technology Press. Shimono A, Ueno S, Gu S, et al. Range shifts of Potentilla fruticosa during glacial and interglacial periods on the Qinghai-Tibetan Plateau revealed by chloroplast DNA sequence variation. Heredity. (in press).
33. Stehlik I, Schneller JJ, Bachmann K (2001) Resistance or emigration: response of the high-alpine plant Eritrichium nanum (L.) Gaudin to the ice age within the central Alps. Mol Ecol 10:357-370
34. Tang LY, Shen CM (1996a) Late Cenozoic vegetational history and climatic characteristics of Qinghai-Xizang Plateau. Acta Micropalaeontol Sin 13:321-337
35. Tang LY, Shen CM (1996b) Progresses in the study of vegetation and climate changes since Pliocene in the Qinghai-Xizang Plateau [in Chinese]. Adv Earth Sci 11:98-203.
36. Vendramin G, Degen GB, Petit RJ, et al. (1999) High level of variation at Abies alba chloroplast microsatellite loci in Europe. Mol Ecol 8:1117-1126
37. Wang L, Abbott RJ, Zheng W, et al. (2009) History and evolution of alpine plants endemic to the Qinghai-Tibetan Plateau: Aconitum gymnandrum (Ranunculaceae). Mol Ecol 18:709-721
38. Ward FK (1935) A sketch of the geography and botany of Tibet, being materials for a flora of that country. J Linn Soc Lond Bot 50:239-265
39. Wu ZY (1979) The regionalization of Chinese flora [in Chinese]. Acta Bot Yunnan 1:1-22.
40. Yang FS, Li YF, Ding X, et al. (2008) Extensive population expansion of Pedicularis longiflora (Orobanchaceae) on the Qinghai-Tibetan Plateau and its correlation with the Quaternary climate change. Mol Ecol 17:5135-5145
41. Yü TT, Lu LT, Ku TC (1984) The floristic characteristics and geographical distribution of Rosaceae in Tibet [in Chinese]. Acta Phytotaxon Sin 22:351-359.
42. Zhang FF, Jing ZG (2006) Mitochondrial phylogeography and genetic diversity of Tibetan gazelle (Procapra picticaudata): implications for conservation. Mol Phylogenet Evol 41:313-321
43. Zhang Q, Chiang TY, George M, et al. (2005) Phylogeography of the Qinghai-Tibetan Plateau endemic Juniperus przewalskii (Cupressaceae) inferred from chloroplast DNA sequence variation. Mol Ecol 14:3513-3524 (Pubitemid 43919953)