메뉴 건너뛰기




Volumn , Issue , 2009, Pages 178-183

A new parallel asynchronous cellular genetic algorithm for de novo genomic sequencing

Author keywords

Decentralized population; DNA assembly; Genetic algorithms; Parallel

Indexed keywords

CELLULAR GENETIC ALGORITHMS; COMPUTATION TIME; CRITICAL STEPS; DECENTRALIZED POPULATION; DNA ASSEMBLIES; DNA CHAINS; DNA FRAGMENT; GENOMIC SEQUENCING; LOCAL SEARCH METHOD; MULTI-CORE PROCESSOR; NP COMPLETE PROBLEMS; OTHER ALGORITHMS; PROBLEM INSTANCES;

EID: 77649282969     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/SoCPaR.2009.45     Document Type: Conference Paper
Times cited : (6)

References (21)
  • 1
    • 55749091616 scopus 로고    scopus 로고
    • Cellular Genetic Algorithms
    • Operations Research/Compuer Science Interfaces. Springer-Verlag Heidelberg
    • E. Alba and B. Dorronsoro, Cellular Genetic Algorithms, ser. Operations Research/Compuer Science Interfaces. Springer-Verlag Heidelberg, 2008.
    • (2008) ser
    • Alba, E.1    Dorronsoro, B.2
  • 2
  • 4
    • 77649320267 scopus 로고    scopus 로고
    • G. Luque, E. Alba, and B. Dorronsoro, Optimization Techniques for Solving Complex Problems. Wiley, 2009, ch. Analyzing Parallel Cellular Genetic Algorithms, pp. 49-62.
    • G. Luque, E. Alba, and B. Dorronsoro, Optimization Techniques for Solving Complex Problems. Wiley, 2009, ch. Analyzing Parallel Cellular Genetic Algorithms, pp. 49-62.
  • 6
    • 77649310231 scopus 로고    scopus 로고
    • J. Setubal and J. Meidanis, Introduction to Computational Molecular Biology. Brazil: University of Campinas, 1997, ch. 4 - Fragment Assembly of DNA, pp. 105-139.
    • J. Setubal and J. Meidanis, Introduction to Computational Molecular Biology. Brazil: University of Campinas, 1997, ch. 4 - Fragment Assembly of DNA, pp. 105-139.
  • 7
    • 34547312505 scopus 로고    scopus 로고
    • Shotgun sequence assembly
    • M. Pop, "Shotgun sequence assembly," Advances in Computers, vol. 60, pp. 194-248, 2004.
    • (2004) Advances in Computers , vol.60 , pp. 194-248
    • Pop, M.1
  • 8
    • 38049086719 scopus 로고    scopus 로고
    • A New Local Search Algorithm for the DNA Fragment Assembly Problem
    • Evolutionary Computation in Combinatorial Optimization Evo*, Springer
    • E. Alba and G. Luque, "A New Local Search Algorithm for the DNA Fragment Assembly Problem," in Evolutionary Computation in Combinatorial Optimization (Evo*), ser. LNCS, vol. 4446. Springer, 2007, pp. 1-12.
    • (2007) ser. LNCS , vol.4446 , pp. 1-12
    • Alba, E.1    Luque, G.2
  • 11
    • 77649311139 scopus 로고    scopus 로고
    • E. Alba, B. Dorronsoro, M. Giacobini, and M. Tomassini, Handbook of Bioinspired Algorithms and Applications. CRC Press, 2006, ch. Decentralized Cellular Evolutionary Algorithms, pp. 103-120.
    • E. Alba, B. Dorronsoro, M. Giacobini, and M. Tomassini, Handbook of Bioinspired Algorithms and Applications. CRC Press, 2006, ch. Decentralized Cellular Evolutionary Algorithms, pp. 103-120.
  • 12
    • 27144445163 scopus 로고    scopus 로고
    • Computational Methods for Fast and Accurate DNA Fragment Assembly,
    • CS-TR-99-1406, University of Wisconsin-Madison
    • C. Allex, "Computational Methods for Fast and Accurate DNA Fragment Assembly," UW Technical Report CS-TR-99-1406, University of Wisconsin-Madison, 1999.
    • (1999) UW Technical Report
    • Allex, C.1
  • 13
    • 4644275238 scopus 로고    scopus 로고
    • De novo repeat classification and fragment assembly
    • P. Pevzner, H. Tang, and G. Tesler, "De novo repeat classification and fragment assembly," Genome Research, vol. 14, pp. 1786-1796, 2004.
    • (2004) Genome Research , vol.14 , pp. 1786-1796
    • Pevzner, P.1    Tang, H.2    Tesler, G.3
  • 14
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • D. Zerbino and E. Birney, "Velvet: Algorithms for de novo short read assembly using de Bruijn graphs," Genome Research, vol. 18, pp. 821-828, 2008.
    • (2008) Genome Research , vol.18 , pp. 821-828
    • Zerbino, D.1    Birney, E.2
  • 15
    • 35948929094 scopus 로고    scopus 로고
    • SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing
    • J. Dohm, C. Lottaz, T. Borodina, and H. Himmelbauer, "SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing," Genome Research, vol. 17, pp. 1697-1706, 2007.
    • (2007) Genome Research , vol.17 , pp. 1697-1706
    • Dohm, J.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 16
    • 27144507203 scopus 로고    scopus 로고
    • A structured Pattern Matching Approach to Shotgun Sequence Assembly,
    • Ph.D. dissertation, Computer Science Department, The University of Iowa
    • S. Kim, "A structured Pattern Matching Approach to Shotgun Sequence Assembly," Ph.D. dissertation, Computer Science Department, The University of Iowa, 1997.
    • (1997)
    • Kim, S.1
  • 17
  • 18
    • 0001237146 scopus 로고
    • A method for solving traveling salesman problems
    • G. Croes, "A method for solving traveling salesman problems," Operations Reserach, vol. 6, pp. 791-812, 1958.
    • (1958) Operations Reserach , vol.6 , pp. 791-812
    • Croes, G.1
  • 20
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • X. Huang and A. Madan, "CAP3: A DNA sequence assembly program," Genome Research, vol. 9, pp. 868-877, 1999.
    • (1999) Genome Research , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 21
    • 0345409101 scopus 로고
    • P. Green, "Phrap," http://www.phrap.org, 1994.
    • (1994) Phrap
    • Green, P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.