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Volumn , Issue , 2004, Pages 329-335

A comparison of DNA fragment assembly algorithms

Author keywords

Consensus; Fragment assembly; Layout; Optimization algorithm; Overlap; Shotgun

Indexed keywords

ALGORITHMS; COMPUTATIONAL COMPLEXITY; GENES; HEURISTIC METHODS; OPTIMIZATION; PROBLEM SOLVING;

EID: 11144279964     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (34)

References (13)
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    • Chen, T.1    Skiena, S.S.2
  • 3
    • 11144301130 scopus 로고    scopus 로고
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    • Elloumi, M. and Kaabi, S., "Exact and approximation algorithms for the DNA sequence assembly problem", SCI in Biology and Medicine, Volume 8, 1999.
    • (1999) SCI in Biology and Medicine , vol.8
    • Elloumi, M.1    Kaabi, S.2
  • 4
    • 0027252551 scopus 로고    scopus 로고
    • Artificially generated data sets for testing DNA fragment assembly algorithms
    • Engle, M.L. and Burks, C., "Artificially generated data sets for testing DNA fragment assembly algorithms", Genomics, 16, 1996.
    • (1996) Genomics , vol.16
    • Engle, M.L.1    Burks, C.2
  • 5
    • 11144335882 scopus 로고
    • Phrap, http://www.mbt.washington.edu/phrap.documentation.html 1994.
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  • 6
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • 1999
    • Huang, X. and Madan, A, "CAP3: A DNA sequence assembly program", Genome Research, vol. 9, 1999, pp. 868-877, 1998.
    • (1998) Genome Research , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 7
    • 0032990711 scopus 로고    scopus 로고
    • AMASS: A structured pattern matching approach to shotgun sequence assembly
    • Kim, S. and Segre, A. M, "AMASS: A structured pattern matching approach to shotgun sequence assembly", Journal of Computational Biology, 6(2), pp. 163-186, 1999.
    • (1999) Journal of Computational Biology , vol.6 , Issue.2 , pp. 163-186
    • Kim, S.1    Segre, A.M.2
  • 9
    • 0029312158 scopus 로고    scopus 로고
    • Towards simplifying and accurately formulating fragment assembly
    • Myers, E. W., "Towards simplifying and accurately formulating fragment assembly", Journal of Computational Biology, 2(2), pp. 275-290, 2000.
    • (2000) Journal of Computational Biology , vol.2 , Issue.2 , pp. 275-290
    • Myers, E.W.1
  • 10
    • 0031386476 scopus 로고
    • A case study in experimental design applied to genetic algorithms with applications to DNA sequence assembly
    • Parsons, R. and Johnson, M. E., "A case study in experimental design applied to genetic algorithms with applications to DNA sequence assembly", American Journal of Mathematical and Management Sciences, no. 11, pp. 369-396, 1995.
    • (1995) American Journal of Mathematical and Management Sciences , Issue.11 , pp. 369-396
    • Parsons, R.1    Johnson, M.E.2
  • 12
    • 0035859921 scopus 로고    scopus 로고
    • An Eulerian path approach to DNA fragment assembly
    • Pevzner, P. A., Tang, H. and Waterman, M. S. An Eulerian path approach to DNA fragment assembly. Proc. Nat. Acad. Sci., 98 (17), pp. 9748-9753, 2001.
    • (2001) Proc. Nat. Acad. Sci. , vol.98 , Issue.17 , pp. 9748-9753
    • Pevzner, P.A.1    Tang, H.2    Waterman, M.S.3
  • 13
    • 0001899550 scopus 로고
    • TIGR Assembler: A new tool for assembling large shotgun sequencing projects
    • Sutton, G., White, O., Adams, M., and Kerlavage, A., "TIGR Assembler: A new tool for assembling large shotgun sequencing projects", Genome Science & Technology, no. 1, pp. 9-19, 1995.
    • (1995) Genome Science & Technology , Issue.1 , pp. 9-19
    • Sutton, G.1    White, O.2    Adams, M.3    Kerlavage, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.