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Volumn 86, Issue 3, 2010, Pages 331-342

Using Principal Components of Genetic Variation for Robust and Powerful Detection of Gene-Gene Interactions in Case-Control and Case-Only Studies

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BREAST CANCER; FALSE POSITIVE RESULT; GENE FREQUENCY; GENE INTERACTION; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC VARIABILITY; LOGISTIC REGRESSION ANALYSIS; POPULATION GENETICS; PRIORITY JOURNAL;

EID: 77649235526     PISSN: 00029297     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ajhg.2010.01.026     Document Type: Article
Times cited : (38)

References (29)
  • 1
    • 69449103972 scopus 로고    scopus 로고
    • Epistasis and its implications for personal genetics
    • Moore J.H., and Williams S.M. Epistasis and its implications for personal genetics. Am. J. Hum. Genet. 85 (2009) 309-320
    • (2009) Am. J. Hum. Genet. , vol.85 , pp. 309-320
    • Moore, J.H.1    Williams, S.M.2
  • 2
    • 0028089404 scopus 로고
    • Non-hierarchical logistic models and case-only designs for assessing susceptibility in population-based case-control studies
    • Piegorsch W.W., Weinberg C.R., and Taylor J.A. Non-hierarchical logistic models and case-only designs for assessing susceptibility in population-based case-control studies. Stat. Med. 13 (1994) 153-162
    • (1994) Stat. Med. , vol.13 , pp. 153-162
    • Piegorsch, W.W.1    Weinberg, C.R.2    Taylor, J.A.3
  • 3
    • 0029787622 scopus 로고    scopus 로고
    • Nontraditional epidemiologic approaches in the analysis of gene-environment interaction: Case-control studies with no controls!
    • Khoury M.J., and Flanders W.D. Nontraditional epidemiologic approaches in the analysis of gene-environment interaction: Case-control studies with no controls!. Am. J. Epidemiol. 144 (1996) 207-213
    • (1996) Am. J. Epidemiol. , vol.144 , pp. 207-213
    • Khoury, M.J.1    Flanders, W.D.2
  • 4
    • 33751074962 scopus 로고    scopus 로고
    • Test for interaction between two unlinked loci
    • Zhao J., Jin L., and Xiong M. Test for interaction between two unlinked loci. Am. J. Hum. Genet. 79 (2006) 831-845
    • (2006) Am. J. Hum. Genet. , vol.79 , pp. 831-845
    • Zhao, J.1    Jin, L.2    Xiong, M.3
  • 5
    • 34548352849 scopus 로고    scopus 로고
    • Bayesian inference of epistatic interactions in case-control studies
    • Zhang Y., and Liu J.S. Bayesian inference of epistatic interactions in case-control studies. Nat. Genet. 39 (2007) 1167-1173
    • (2007) Nat. Genet. , vol.39 , pp. 1167-1173
    • Zhang, Y.1    Liu, J.S.2
  • 6
    • 70149125212 scopus 로고    scopus 로고
    • Restricted parameter space models for testing gene-gene interaction
    • Song M., and Nicolae D.L. Restricted parameter space models for testing gene-gene interaction. Genet. Epidemiol. 33 (2009) 386-393
    • (2009) Genet. Epidemiol. , vol.33 , pp. 386-393
    • Song, M.1    Nicolae, D.L.2
  • 7
    • 66649108315 scopus 로고    scopus 로고
    • Epistatic module detection for case-control studies: A Bayesian model with a Gibbs sampling strategy
    • Tang W., Wu X., Jiang R., and Li Y. Epistatic module detection for case-control studies: A Bayesian model with a Gibbs sampling strategy. PLoS Genet. 5 (2009) e1000464
    • (2009) PLoS Genet. , vol.5
    • Tang, W.1    Wu, X.2    Jiang, R.3    Li, Y.4
  • 10
    • 34247585477 scopus 로고    scopus 로고
    • A simple and improved correction for population stratification in case-control studies
    • Epstein M.P., Allen A.S., and Satten G.A. A simple and improved correction for population stratification in case-control studies. Am. J. Hum. Genet. 80 (2007) 921-930
    • (2007) Am. J. Hum. Genet. , vol.80 , pp. 921-930
    • Epstein, M.P.1    Allen, A.S.2    Satten, G.A.3
  • 11
    • 67749088603 scopus 로고    scopus 로고
    • Impact of selection and demography on the diffusion of lactase persistence
    • Gerbault P., Moret C., Currat M., and Sanchez-Mazas A. Impact of selection and demography on the diffusion of lactase persistence. PLoS ONE 4 (2009) e6369
    • (2009) PLoS ONE , vol.4
    • Gerbault, P.1    Moret, C.2    Currat, M.3    Sanchez-Mazas, A.4
  • 12
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price A.L., Patterson N.J., Plenge R.M., Weinblatt M.E., Shadick N.A., and Reich D. Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38 (2006) 904-909
    • (2006) Nat. Genet. , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5    Reich, D.6
  • 14
    • 69949161184 scopus 로고    scopus 로고
    • Genotype-based matching to correct for population stratification in large-scale case-control genetic association studies
    • Guan W., Liang L., Boehnke M., and Abecasis G.R. Genotype-based matching to correct for population stratification in large-scale case-control genetic association studies. Genet. Epidemiol. 33 (2009) 508-517
    • (2009) Genet. Epidemiol. , vol.33 , pp. 508-517
    • Guan, W.1    Liang, L.2    Boehnke, M.3    Abecasis, G.R.4
  • 16
    • 12744259875 scopus 로고    scopus 로고
    • Exploiting gene-environment independence in family-based case-control studies: increased power for detecting associations, interactions and joint effects
    • Chatterjee N., Kalaylioglu Z., and Carroll R.J. Exploiting gene-environment independence in family-based case-control studies: increased power for detecting associations, interactions and joint effects. Genet. Epidemiol. 28 (2005) 138-156
    • (2005) Genet. Epidemiol. , vol.28 , pp. 138-156
    • Chatterjee, N.1    Kalaylioglu, Z.2    Carroll, R.J.3
  • 18
    • 0018671320 scopus 로고
    • Logistic disease incidence models and case-control studies
    • Prentice R.L., and Pyke R. Logistic disease incidence models and case-control studies. Biometrika 66 (1979) 403-411
    • (1979) Biometrika , vol.66 , pp. 403-411
    • Prentice, R.L.1    Pyke, R.2
  • 20
  • 21
    • 16844366786 scopus 로고    scopus 로고
    • Genome-wide strategies for detecting multiple loci that influence complex diseases
    • Marchini J., Donnelly P., and Cardon L.R. Genome-wide strategies for detecting multiple loci that influence complex diseases. Nat. Genet. 37 (2005) 413-417
    • (2005) Nat. Genet. , vol.37 , pp. 413-417
    • Marchini, J.1    Donnelly, P.2    Cardon, L.R.3
  • 22
    • 33847059098 scopus 로고    scopus 로고
    • Exploiting gene-environment interaction to detect genetic associations
    • Kraft P., Yen Y.-C., Stram D.O., Morrison J., and Gauderman W.J. Exploiting gene-environment interaction to detect genetic associations. Hum. Hered. 63 (2007) 111-119
    • (2007) Hum. Hered. , vol.63 , pp. 111-119
    • Kraft, P.1    Yen, Y.-C.2    Stram, D.O.3    Morrison, J.4    Gauderman, W.J.5
  • 23
    • 29244467388 scopus 로고    scopus 로고
    • A testing framework for identifying susceptibility genes in the presence of epistasis
    • Millstein J., Conti D.V., Gilliland F.D., and Gauderman W.J. A testing framework for identifying susceptibility genes in the presence of epistasis. Am. J. Hum. Genet. 78 (2006) 15-27
    • (2006) Am. J. Hum. Genet. , vol.78 , pp. 15-27
    • Millstein, J.1    Conti, D.V.2    Gilliland, F.D.3    Gauderman, W.J.4
  • 24
    • 33845284533 scopus 로고    scopus 로고
    • Powerful multilocus tests of genetic association in the presence of gene-gene and gene-environment interactions
    • Chatterjee N., Kalaylioglu Z., Moslehi R., Peters U., and Wacholder S. Powerful multilocus tests of genetic association in the presence of gene-gene and gene-environment interactions. Am. J. Hum. Genet. 79 (2006) 1002-1016
    • (2006) Am. J. Hum. Genet. , vol.79 , pp. 1002-1016
    • Chatterjee, N.1    Kalaylioglu, Z.2    Moslehi, R.3    Peters, U.4    Wacholder, S.5
  • 25
    • 38049026746 scopus 로고    scopus 로고
    • Detecting association using epistatic information
    • Chapman J., and Clayton D. Detecting association using epistatic information. Genet. Epidemiol. 31 (2007) 894-909
    • (2007) Genet. Epidemiol. , vol.31 , pp. 894-909
    • Chapman, J.1    Clayton, D.2
  • 26
    • 12744255341 scopus 로고    scopus 로고
    • Semiparametric maximum likelihood estimation exploiting gene-environment independence in case-control studies
    • Chatterjee N., and Carroll R.J. Semiparametric maximum likelihood estimation exploiting gene-environment independence in case-control studies. Biometrika 92 (2005) 399-418
    • (2005) Biometrika , vol.92 , pp. 399-418
    • Chatterjee, N.1    Carroll, R.J.2
  • 27
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
    • Ritchie M.D., Hahn L.W., Roodi N., Bailey L.R., Dupont W.D., Parl F.F., and Moore J.H. Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am. J. Hum. Genet. 69 (2001) 138-147
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, W.D.5    Parl, F.F.6    Moore, J.H.7
  • 28
    • 12744269194 scopus 로고    scopus 로고
    • Identifying interacting SNPs using Monte Carlo logic regression
    • Kooperberg C., and Ruczinski I. Identifying interacting SNPs using Monte Carlo logic regression. Genet. Epidemiol. 28 (2005) 157-170
    • (2005) Genet. Epidemiol. , vol.28 , pp. 157-170
    • Kooperberg, C.1    Ruczinski, I.2
  • 29
    • 37249080278 scopus 로고    scopus 로고
    • Penalized logistic regression for detecting gene interactions
    • Park M.Y., and Hastie T. Penalized logistic regression for detecting gene interactions. Biostatistics 9 (2008) 30-50
    • (2008) Biostatistics , vol.9 , pp. 30-50
    • Park, M.Y.1    Hastie, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.