-
1
-
-
0030442652
-
The relationship of DNA methylation to cancer
-
Bird A.P. The relationship of DNA methylation to cancer. Cancer Surv. 1996, 28:87-101.
-
(1996)
Cancer Surv.
, vol.28
, pp. 87-101
-
-
Bird, A.P.1
-
2
-
-
0042329754
-
Structure, function and evolution of CpG island promoters
-
Antequera F. Structure, function and evolution of CpG island promoters. Cell. Mol. Life Sci. 2003, 60(8):1647-1658.
-
(2003)
Cell. Mol. Life Sci.
, vol.60
, Issue.8
, pp. 1647-1658
-
-
Antequera, F.1
-
3
-
-
37548999369
-
Computational epigenetics
-
Bock C., Lengauer T. Computational epigenetics. Bioinformatics 2008, 24(1):1-10.
-
(2008)
Bioinformatics
, vol.24
, Issue.1
, pp. 1-10
-
-
Bock, C.1
Lengauer, T.2
-
4
-
-
0023216891
-
CpG islands in vertebrate genomes
-
Gardiner-Garden M., Frommer M. CpG islands in vertebrate genomes. J. Mol. Biol. 1987, 196(2):261-282.
-
(1987)
J. Mol. Biol.
, vol.196
, Issue.2
, pp. 261-282
-
-
Gardiner-Garden, M.1
Frommer, M.2
-
5
-
-
67349255210
-
CpG islands-'a rough guide'
-
Illingworth R.S., Bird A.P. CpG islands-'a rough guide'. FEBS Lett. 2009, 583(11):1713-1720.
-
(2009)
FEBS Lett.
, vol.583
, Issue.11
, pp. 1713-1720
-
-
Illingworth, R.S.1
Bird, A.P.2
-
6
-
-
31944432339
-
A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
-
Saxonov S., Berg P., Brutlag D.L. A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc. Natl. Acad. Sci. USA 2006, 103(5):1412-1417.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, Issue.5
, pp. 1412-1417
-
-
Saxonov, S.1
Berg, P.2
Brutlag, D.L.3
-
7
-
-
32044455298
-
Large-scale structure of genomic methylation patterns
-
Rollins R.A., Haghighi F., Edwards J.R., Das R., Zhang M.Q., Ju J., Bestor T.H. Large-scale structure of genomic methylation patterns. Genome Res. 2006, 16(2):157-163.
-
(2006)
Genome Res.
, vol.16
, Issue.2
, pp. 157-163
-
-
Rollins, R.A.1
Haghighi, F.2
Edwards, J.R.3
Das, R.4
Zhang, M.Q.5
Ju, J.6
Bestor, T.H.7
-
8
-
-
0345357773
-
Gene silencing in cancer in association with promoter hypermethylation
-
Herman J.G., Baylin S.B. Gene silencing in cancer in association with promoter hypermethylation. N. Engl. J. Med. 2003, 349(21):2042-2054.
-
(2003)
N. Engl. J. Med.
, vol.349
, Issue.21
, pp. 2042-2054
-
-
Herman, J.G.1
Baylin, S.B.2
-
9
-
-
22844457491
-
DNA methylation and human disease
-
Robertson K.D. DNA methylation and human disease. Nat. Rev. Genet. 2005, 6(8):597-610.
-
(2005)
Nat. Rev. Genet.
, vol.6
, Issue.8
, pp. 597-610
-
-
Robertson, K.D.1
-
10
-
-
13844320649
-
Aberrant DNA methylation as a cancer-inducing mechanism
-
Esteller M. Aberrant DNA methylation as a cancer-inducing mechanism. Annu. Rev. Pharmacol. Toxicol. 2005, 45:629-656.
-
(2005)
Annu. Rev. Pharmacol. Toxicol.
, vol.45
, pp. 629-656
-
-
Esteller, M.1
-
11
-
-
1042278765
-
The history of cancer epigenetics
-
Feinberg A.P., Tycko B. The history of cancer epigenetics. Nat. Rev. Cancer 2004, 4(2):143-153.
-
(2004)
Nat. Rev. Cancer
, vol.4
, Issue.2
, pp. 143-153
-
-
Feinberg, A.P.1
Tycko, B.2
-
12
-
-
33645777446
-
CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure
-
Bock C., Paulsen M., Tierling S., Mikeska T., Lengauer T., Walter J. CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure. PLoS Genet. 2006, 2(3):e26.
-
(2006)
PLoS Genet.
, vol.2
, Issue.3
-
-
Bock, C.1
Paulsen, M.2
Tierling, S.3
Mikeska, T.4
Lengauer, T.5
Walter, J.6
-
13
-
-
39649122136
-
Cancer epigenetics: modifications, screening, and therapy
-
Gal-Yam E.N., Saito Y., Egger G., Jones P.A. Cancer epigenetics: modifications, screening, and therapy. Annu. Rev. Med. 2008, 59:267-280.
-
(2008)
Annu. Rev. Med.
, vol.59
, pp. 267-280
-
-
Gal-Yam, E.N.1
Saito, Y.2
Egger, G.3
Jones, P.A.4
-
14
-
-
33747865502
-
Independent component analysis-based penalized discriminant method for tumor classification using gene expression data
-
Huang D.S., Zheng C.H. Independent component analysis-based penalized discriminant method for tumor classification using gene expression data. Bioinformatics 2006, 22(15):1855-1862.
-
(2006)
Bioinformatics
, vol.22
, Issue.15
, pp. 1855-1862
-
-
Huang, D.S.1
Zheng, C.H.2
-
15
-
-
33847266422
-
Genomic sweeping for hypermethylated genes
-
Goh L., Murphy S.K., Muhkerjee S., Furey T.S. Genomic sweeping for hypermethylated genes. Bioinformatics 2007, 23(3):281-288.
-
(2007)
Bioinformatics
, vol.23
, Issue.3
, pp. 281-288
-
-
Goh, L.1
Murphy, S.K.2
Muhkerjee, S.3
Furey, T.S.4
-
16
-
-
58249101395
-
Pap smear diagnosis using a hybrid intelligent scheme focusing on genetic algorithm based feature selection and nearest neighbor classification
-
Marinakis Y., Dounias G., Jantzen J. Pap smear diagnosis using a hybrid intelligent scheme focusing on genetic algorithm based feature selection and nearest neighbor classification. Comput. Biol. Med. 2009, 39(1):69-78.
-
(2009)
Comput. Biol. Med.
, vol.39
, Issue.1
, pp. 69-78
-
-
Marinakis, Y.1
Dounias, G.2
Jantzen, J.3
-
18
-
-
67849084657
-
Feature extraction and dimensionality reduction for mass spectrometry data
-
Liu Y. Feature extraction and dimensionality reduction for mass spectrometry data. Comput. Biol. Med. 2009, 39(9):818-823.
-
(2009)
Comput. Biol. Med.
, vol.39
, Issue.9
, pp. 818-823
-
-
Liu, Y.1
-
19
-
-
58249096348
-
Automated recognition of patients with obstructive sleep apnoea using wavelet-based features of electrocardiogram recordings
-
Khandoker A.H., Karmakar C.K., Palaniswami M. Automated recognition of patients with obstructive sleep apnoea using wavelet-based features of electrocardiogram recordings. Comput. Biol. Med. 2009, 39(1):88-96.
-
(2009)
Comput. Biol. Med.
, vol.39
, Issue.1
, pp. 88-96
-
-
Khandoker, A.H.1
Karmakar, C.K.2
Palaniswami, M.3
-
20
-
-
56349099699
-
Selection of human embryos for transfer by Bayesian classifiers
-
Morales D.A., Bengoetxea E., Larranaga P. Selection of human embryos for transfer by Bayesian classifiers. Comput. Biol. Med. 2008, 38(11-12):1177-1186.
-
(2008)
Comput. Biol. Med.
, vol.38
, Issue.11-12
, pp. 1177-1186
-
-
Morales, D.A.1
Bengoetxea, E.2
Larranaga, P.3
-
21
-
-
39849091039
-
MeInfoText: associated gene methylation and cancer information from text mining
-
Fang Y.C., Huang H.C., Juan H.F. MeInfoText: associated gene methylation and cancer information from text mining. BMC Bioinformatics 2008, 9:22.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 22
-
-
Fang, Y.C.1
Huang, H.C.2
Juan, H.F.3
-
22
-
-
38549131376
-
The UCSC Genome Browser Database: 2008 update
-
Database issue
-
Karolchik D., Kuhn R.M., Baertsch R., Barber G.P., Clawson H., Diekhans M., Giardine B., Harte R.A., Hinrichs A.S., Hsu F., Kober K.M., Miller W., Pedersen J.S., Pohl A., Raney B.J., Rhead B., Rosenbloom K.R., Smith K.E., Stanke M., Thakkapallayil A., Trumbower H., Wang T., Zweig A.S., Haussler D., Kent W.J. The UCSC Genome Browser Database: 2008 update. Nucleic Acids Res. 2008, 36(Database issue):D773-D779.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Karolchik, D.1
Kuhn, R.M.2
Baertsch, R.3
Barber, G.P.4
Clawson, H.5
Diekhans, M.6
Giardine, B.7
Harte, R.A.8
Hinrichs, A.S.9
Hsu, F.10
Kober, K.M.11
Miller, W.12
Pedersen, J.S.13
Pohl, A.14
Raney, B.J.15
Rhead, B.16
Rosenbloom, K.R.17
Smith, K.E.18
Stanke, M.19
Thakkapallayil, A.20
Trumbower, H.21
Wang, T.22
Zweig, A.S.23
Haussler, D.24
Kent, W.J.25
more..
-
23
-
-
25844449770
-
Galaxy: a platform for interactive large-scale genome analysis
-
Giardine B., Riemer C., Hardison R.C., Burhans R., Elnitski L., Shah P., Zhang Y., Blankenberg D., Albert I., Taylor J., Miller W., Kent W.J., Nekrutenko A. Galaxy: a platform for interactive large-scale genome analysis. Genome Res. 2005, 15(10):1451-1455.
-
(2005)
Genome Res.
, vol.15
, Issue.10
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
Shah, P.6
Zhang, Y.7
Blankenberg, D.8
Albert, I.9
Taylor, J.10
Miller, W.11
Kent, W.J.12
Nekrutenko, A.13
-
24
-
-
33645803424
-
Correlation-based feature selection of discrete and numeric class machine learning
-
Hamilton, New Zealand
-
M.A. Hall, Correlation-based feature selection of discrete and numeric class machine learning. Working paper 00/08, University of Waikato, Department of Computer Science, Hamilton, New Zealand, 2000.
-
(2000)
Working paper 00/08, University of Waikato, Department of Computer Science
-
-
Hall, M.A.1
-
25
-
-
7244250182
-
Data mining in bioinformatics using Weka
-
Frank E., Hall M., Trigg L., Holmes G., Witten I.H. Data mining in bioinformatics using Weka. Bioinformatics 2004, 20(15):2479-2481.
-
(2004)
Bioinformatics
, vol.20
, Issue.15
, pp. 2479-2481
-
-
Frank, E.1
Hall, M.2
Trigg, L.3
Holmes, G.4
Witten, I.H.5
-
26
-
-
67349243729
-
Classification of peptide mass fingerprint data by novel no-regret boosting method
-
Gambin A., Szczurek E., Dutkowski J., Bakun M., Dadlez M. Classification of peptide mass fingerprint data by novel no-regret boosting method. Comput. Biol. Med. 2009, 39(5):460-473.
-
(2009)
Comput. Biol. Med.
, vol.39
, Issue.5
, pp. 460-473
-
-
Gambin, A.1
Szczurek, E.2
Dutkowski, J.3
Bakun, M.4
Dadlez, M.5
-
27
-
-
38049148026
-
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
-
Sherman B.T., Huang da W., Tan Q., Guo Y., Bour S., Liu D., Stephens R., Baseler M.W., Lane H.C., Lempicki R.A. DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. BMC Bioinformatics 2007, 8:426.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 426
-
-
Sherman, B.T.1
Huang da, W.2
Tan, Q.3
Guo, Y.4
Bour, S.5
Liu, D.6
Stephens, R.7
Baseler, M.W.8
Lane, H.C.9
Lempicki, R.A.10
-
28
-
-
22144438660
-
Tuberin and hamartin are aberrantly expressed and linked to clinical outcome in human breast cancer: the role of promoter methylation of TSC genes
-
Jiang W.G., Sampson J., Martin T.A., Lee-Jones L., Watkins G., Douglas-Jones A., Mokbel K., Mansel R.E. Tuberin and hamartin are aberrantly expressed and linked to clinical outcome in human breast cancer: the role of promoter methylation of TSC genes. Eur. J. Cancer 2005, 41(11):1628-1636.
-
(2005)
Eur. J. Cancer
, vol.41
, Issue.11
, pp. 1628-1636
-
-
Jiang, W.G.1
Sampson, J.2
Martin, T.A.3
Lee-Jones, L.4
Watkins, G.5
Douglas-Jones, A.6
Mokbel, K.7
Mansel, R.E.8
-
29
-
-
51349148948
-
PTEN-deficient cancers depend on PIK3CB
-
Wee S., Wiederschain D., Maira S.M., Loo A., Miller C., deBeaumont R., Stegmeier F., Yao Y.M., Lengauer C. PTEN-deficient cancers depend on PIK3CB. Proc. Natl. Acad. Sci. USA 2008, 105(35):13057-13062.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, Issue.35
, pp. 13057-13062
-
-
Wee, S.1
Wiederschain, D.2
Maira, S.M.3
Loo, A.4
Miller, C.5
deBeaumont, R.6
Stegmeier, F.7
Yao, Y.M.8
Lengauer, C.9
-
30
-
-
58849104486
-
Histone deacetylase 8 in neuroblastoma tumorigenesis
-
Oehme I., Deubzer H.E., Wegener D., Pickert D., Linke J.P., Hero B., Kopp-Schneider A., Westermann F., Ulrich S.M., von Deimling A., Fischer M., Witt O. Histone deacetylase 8 in neuroblastoma tumorigenesis. Clin. Cancer Res. 2009, 15(1):91-99.
-
(2009)
Clin. Cancer Res.
, vol.15
, Issue.1
, pp. 91-99
-
-
Oehme, I.1
Deubzer, H.E.2
Wegener, D.3
Pickert, D.4
Linke, J.P.5
Hero, B.6
Kopp-Schneider, A.7
Westermann, F.8
Ulrich, S.M.9
von Deimling, A.10
Fischer, M.11
Witt, O.12
-
31
-
-
39449089088
-
Effective selection of informative SNPs and classification on the HapMap genotype data
-
Zhou N., Wang L. Effective selection of informative SNPs and classification on the HapMap genotype data. BMC Bioinformatics 2007, 8:484.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 484
-
-
Zhou, N.1
Wang, L.2
-
32
-
-
33746051706
-
Computational prediction of methylation status in human genomic sequences
-
Das R., Dimitrova N., Xuan Z., Rollins R.A., Haghighi F., Edwards J.R., Ju J., Bestor T.H., Zhang M.Q. Computational prediction of methylation status in human genomic sequences. Proc. Natl. Acad. Sci. USA 2006, 103(28):10713-10716.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, Issue.28
, pp. 10713-10716
-
-
Das, R.1
Dimitrova, N.2
Xuan, Z.3
Rollins, R.A.4
Haghighi, F.5
Edwards, J.R.6
Ju, J.7
Bestor, T.H.8
Zhang, M.Q.9
-
33
-
-
0343621494
-
Aberrant CpG-island methylation has non-random and tumour-type-specific patterns
-
Costello J.F., Fruhwald M.C., Smiraglia D.J., Rush L.J., Robertson G.P., Gao X., Wright F.A., Feramisco J.D., Peltomaki P., Lang J.C., Schuller D.E., Yu L., Bloomfield C.D., Caligiuri M.A., Yates A., Nishikawa R., Su Huang H., Petrelli N.J., Zhang X., O'Dorisio M.S., Held W.A., Cavenee W.K., Plass C. Aberrant CpG-island methylation has non-random and tumour-type-specific patterns. Nat. Genet. 2000, 24(2):132-138.
-
(2000)
Nat. Genet.
, vol.24
, Issue.2
, pp. 132-138
-
-
Costello, J.F.1
Fruhwald, M.C.2
Smiraglia, D.J.3
Rush, L.J.4
Robertson, G.P.5
Gao, X.6
Wright, F.A.7
Feramisco, J.D.8
Peltomaki, P.9
Lang, J.C.10
Schuller, D.E.11
Yu, L.12
Bloomfield, C.D.13
Caligiuri, M.A.14
Yates, A.15
Nishikawa, R.16
Su Huang, H.17
Petrelli, N.J.18
Zhang, X.19
O'Dorisio, M.S.20
Held, W.A.21
Cavenee, W.K.22
Plass, C.23
more..
|