메뉴 건너뛰기




Volumn 81, Issue 1, 2010, Pages 61-68

Monitoring of phytoplankton community structure using terminal restriction fragment length polymorphism (T-RFLP)

Author keywords

18S rRNA gene; Cloning; Phytoplankton community; T RFLP

Indexed keywords

RNA 18S;

EID: 77649184033     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2010.01.025     Document Type: Article
Times cited : (22)

References (34)
  • 1
    • 34249011707 scopus 로고    scopus 로고
    • Selective recovery of microalgae from diverse habitats using "phyto-specific" 16S rDNA primers
    • Betournay S., Marsh A.C., Donello N., and Stiller J.W. Selective recovery of microalgae from diverse habitats using "phyto-specific" 16S rDNA primers. J. Phycol. 43 (2007) 609-613
    • (2007) J. Phycol. , vol.43 , pp. 609-613
    • Betournay, S.1    Marsh, A.C.2    Donello, N.3    Stiller, J.W.4
  • 2
    • 33751434274 scopus 로고    scopus 로고
    • Evaluating the physical capture method of terminal restriction fragment length polymorphism for comparison of soil microbial communities
    • Blackwood C.B., and Buyer J.S. Evaluating the physical capture method of terminal restriction fragment length polymorphism for comparison of soil microbial communities. Soil Biol. Biochem. 39 (2007) 590-599
    • (2007) Soil Biol. Biochem. , vol.39 , pp. 590-599
    • Blackwood, C.B.1    Buyer, J.S.2
  • 3
    • 8744286587 scopus 로고    scopus 로고
    • ISSR as new markers for genetic characterization and evaluation of relationships among phytoplankton
    • Bornet B., Antoine E., Bardouil M., and Baut C.M.L. ISSR as new markers for genetic characterization and evaluation of relationships among phytoplankton. J. Appl. Phycol. 16 (2004) 285-290
    • (2004) J. Appl. Phycol. , vol.16 , pp. 285-290
    • Bornet, B.1    Antoine, E.2    Bardouil, M.3    Baut, C.M.L.4
  • 4
    • 20644456881 scopus 로고    scopus 로고
    • Development of sequence characterized amplified region markers from intersimple sequence repeat fingerprints for the molecular detection of toxic phytoplankton Alexandrium catenella (Dinophyceae) and Pseudo-nitzschia pseudodelicatissima (Bacillariophyceae) from French coastal waters
    • Bornet B., Antoine E., Françoise S., and Marcaillou-Le Baut C. Development of sequence characterized amplified region markers from intersimple sequence repeat fingerprints for the molecular detection of toxic phytoplankton Alexandrium catenella (Dinophyceae) and Pseudo-nitzschia pseudodelicatissima (Bacillariophyceae) from French coastal waters. J. Phycol. 41 (2005) 704-711
    • (2005) J. Phycol. , vol.41 , pp. 704-711
    • Bornet, B.1    Antoine, E.2    Françoise, S.3    Marcaillou-Le Baut, C.4
  • 5
  • 6
    • 2642702566 scopus 로고    scopus 로고
    • The role of highly unsaturated fatty acids in aquatic foodweb processes
    • Brett M.T., and Mueller-Navarra D.C. The role of highly unsaturated fatty acids in aquatic foodweb processes. Freshwater Biol. 38 (1997) 483-499
    • (1997) Freshwater Biol. , vol.38 , pp. 483-499
    • Brett, M.T.1    Mueller-Navarra, D.C.2
  • 7
    • 0038719130 scopus 로고    scopus 로고
    • Molecular techniques in phytoplankton research: from allozyme electrophoresis to genomics
    • de Bruin A., Ibelings B.W., and Van Donk E. Molecular techniques in phytoplankton research: from allozyme electrophoresis to genomics. Hydrobiologia 491 (2003) 47-63
    • (2003) Hydrobiologia , vol.491 , pp. 47-63
    • de Bruin, A.1    Ibelings, B.W.2    Van Donk, E.3
  • 8
    • 34248524104 scopus 로고    scopus 로고
    • Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: a methods review
    • Dickie I.A., and FitzJohn R.G. Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: a methods review. Mycorrhiza 17 (2007) 259-270
    • (2007) Mycorrhiza , vol.17 , pp. 259-270
    • Dickie, I.A.1    FitzJohn, R.G.2
  • 9
    • 33747802455 scopus 로고    scopus 로고
    • Assessment of biases associated with profiling simple, model communities using terminal-restriction fragment length polymorphism-based analyses
    • Frey J.C., Angert E.R., and Pell A.N. Assessment of biases associated with profiling simple, model communities using terminal-restriction fragment length polymorphism-based analyses. J. Microbiol. Methods 67 (2006) 9-19
    • (2006) J. Microbiol. Methods , vol.67 , pp. 9-19
    • Frey, J.C.1    Angert, E.R.2    Pell, A.N.3
  • 11
    • 34248347360 scopus 로고    scopus 로고
    • Use of terminal restriction fragment length polymorphism (T-RFLP) for identification of phytoplasmas in plants
    • Hodgetts J., Ball T., Boonham N., Mumford R., and Dickinson M. Use of terminal restriction fragment length polymorphism (T-RFLP) for identification of phytoplasmas in plants. Plant. Pathol. 56 (2007) 357-365
    • (2007) Plant. Pathol. , vol.56 , pp. 357-365
    • Hodgetts, J.1    Ball, T.2    Boonham, N.3    Mumford, R.4    Dickinson, M.5
  • 12
    • 0037728487 scopus 로고    scopus 로고
    • Variation between observed and true Terminal Restriction Fragment length is dependent on true TRF length and purine content
    • Kaplan C.W., and Kitts C.L. Variation between observed and true Terminal Restriction Fragment length is dependent on true TRF length and purine content. J. Microbiol. Methods 54 (2003) 121-125
    • (2003) J. Microbiol. Methods , vol.54 , pp. 121-125
    • Kaplan, C.W.1    Kitts, C.L.2
  • 13
    • 67651154215 scopus 로고    scopus 로고
    • Comparison of soil bacterial community structure in rice paddy fields under different management practices using terminal restriction fragment length polymorphism (T-RFLP)
    • Kim D.Y., Kim C.-G., Sohn S.M., and Park S. Comparison of soil bacterial community structure in rice paddy fields under different management practices using terminal restriction fragment length polymorphism (T-RFLP). J. Ecol. Field Biol. 31 (2008) 309-316
    • (2008) J. Ecol. Field Biol. , vol.31 , pp. 309-316
    • Kim, D.Y.1    Kim, C.-G.2    Sohn, S.M.3    Park, S.4
  • 14
    • 0020867606 scopus 로고
    • Selenium as a growth factor for plankton algae in laboratory experiments and in some Swedish lakes
    • Lindström K. Selenium as a growth factor for plankton algae in laboratory experiments and in some Swedish lakes. Hydrobiologia 101 (1983) 35-48
    • (1983) Hydrobiologia , vol.101 , pp. 35-48
    • Lindström, K.1
  • 15
    • 0036889682 scopus 로고    scopus 로고
    • Assessment of fungal diversity using terminal restriction fragment (TRF) pattern analysis: comparison of 18S and ITS ribosomal regions
    • Lord N.S., Kaplan C.W., Shank P., Kitts C.L., and Elrod S.L. Assessment of fungal diversity using terminal restriction fragment (TRF) pattern analysis: comparison of 18S and ITS ribosomal regions. FEMS Microbiol. Ecol. 42 (2002) 327-337
    • (2002) FEMS Microbiol. Ecol. , vol.42 , pp. 327-337
    • Lord, N.S.1    Kaplan, C.W.2    Shank, P.3    Kitts, C.L.4    Elrod, S.L.5
  • 16
    • 84972481946 scopus 로고
    • The relative importance of nannoplankton and netplankton as primary producers in tropical oceanic and neritic phytoplankton communities
    • Malone T.C. The relative importance of nannoplankton and netplankton as primary producers in tropical oceanic and neritic phytoplankton communities. Limnol. Oceanogr. 16 (1971) 633-639
    • (1971) Limnol. Oceanogr. , vol.16 , pp. 633-639
    • Malone, T.C.1
  • 17
    • 27644505070 scopus 로고    scopus 로고
    • Culture-independent microbial community analysis with terminal restriction fragment length polymorphism
    • Marsh T.L. Culture-independent microbial community analysis with terminal restriction fragment length polymorphism. Environ. Microbiol. 397 (2005) 308-329
    • (2005) Environ. Microbiol. , vol.397 , pp. 308-329
    • Marsh, T.L.1
  • 18
    • 0033868092 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis
    • Marsh T.L., Saxman P., Cole J., and Tiedje J. Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis. Appl. Environ. Microb. 66 (2000) 3616-3620
    • (2000) Appl. Environ. Microb. , vol.66 , pp. 3616-3620
    • Marsh, T.L.1    Saxman, P.2    Cole, J.3    Tiedje, J.4
  • 19
    • 40649125794 scopus 로고    scopus 로고
    • Developing SSU rDNA metagenomic profiles of aquatic microbial communities for environmental assessments
    • Marshall M.M., Amos R.N., Henrich V.C., and Rublee P.A. Developing SSU rDNA metagenomic profiles of aquatic microbial communities for environmental assessments. Ecol. Indic. 8 (2008) 442-453
    • (2008) Ecol. Indic. , vol.8 , pp. 442-453
    • Marshall, M.M.1    Amos, R.N.2    Henrich, V.C.3    Rublee, P.A.4
  • 20
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • Medlin L., Elwood H.J., Stickel S., and Sogin M.L. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71 (1988) 491-499
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 21
    • 29444452486 scopus 로고    scopus 로고
    • Picoeukaryotic plankton diversity at the Helgoland time series site as assessed by three molecular methods
    • Medlin L.K., Metfies K., Mehl H., Wiltshire K., and Valentin K. Picoeukaryotic plankton diversity at the Helgoland time series site as assessed by three molecular methods. Microb. Ecol. 52 (2006) 53-71
    • (2006) Microb. Ecol. , vol.52 , pp. 53-71
    • Medlin, L.K.1    Metfies, K.2    Mehl, H.3    Wiltshire, K.4    Valentin, K.5
  • 22
    • 0032812081 scopus 로고    scopus 로고
    • Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis
    • Moeseneder M.M., Arrieta J.M., Muyzer G., Winter C., and Herndl G.J. Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 65 (1999) 3518-3525
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3518-3525
    • Moeseneder, M.M.1    Arrieta, J.M.2    Muyzer, G.3    Winter, C.4    Herndl, G.J.5
  • 23
    • 0035283902 scopus 로고    scopus 로고
    • Terminal-restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes
    • Moeseneder M.M., Winter C., Arrieta J.M., and Herndl G.J. Terminal-restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes. J. Microbiol. Methods 44 (2001) 159-172
    • (2001) J. Microbiol. Methods , vol.44 , pp. 159-172
    • Moeseneder, M.M.1    Winter, C.2    Arrieta, J.M.3    Herndl, G.J.4
  • 24
    • 0035133741 scopus 로고    scopus 로고
    • Horizontal and vertical complexity of attached and free-living bacteria of the Eastern Mediterranean Sea, determined by 16S rDNA and 16S rRNA fingerprints
    • Moeseneder M.M., Winter C., and Herndl G.J. Horizontal and vertical complexity of attached and free-living bacteria of the Eastern Mediterranean Sea, determined by 16S rDNA and 16S rRNA fingerprints. Limnol. Oceanogr. 46 (2001) 95-107
    • (2001) Limnol. Oceanogr. , vol.46 , pp. 95-107
    • Moeseneder, M.M.1    Winter, C.2    Herndl, G.J.3
  • 25
    • 0026525629 scopus 로고
    • Seasonal succession of phytoplankton in a large shallow lake (Balaton, Hungary)-a dynamic approach to ecological memory, its possible role and mechanisms
    • Padisak J. Seasonal succession of phytoplankton in a large shallow lake (Balaton, Hungary)-a dynamic approach to ecological memory, its possible role and mechanisms. J. Ecol. 80 (1992) 217-230
    • (1992) J. Ecol. , vol.80 , pp. 217-230
    • Padisak, J.1
  • 26
    • 33646481922 scopus 로고    scopus 로고
    • The characterization of bacterial community structure in the rhizosphere of watermelon (Citrullus vulgaris SCHARD.) using culture-based approaches and terminal fragment length polymorphism (T-RFLP). Appl
    • Park S., Ku Y.K., Seo M.J., Kim D.Y., Yeon J.E., Jeong S.C., Yoon W.K., and Kim H.M. The characterization of bacterial community structure in the rhizosphere of watermelon (Citrullus vulgaris SCHARD.) using culture-based approaches and terminal fragment length polymorphism (T-RFLP). Appl. Soil Ecol. 33 (2006) 79-86
    • (2006) Soil Ecol. , vol.33 , pp. 79-86
    • Park, S.1    Ku, Y.K.2    Seo, M.J.3    Kim, D.Y.4    Yeon, J.E.5    Jeong, S.C.6    Yoon, W.K.7    Kim, H.M.8
  • 27
    • 33746733007 scopus 로고    scopus 로고
    • Principal component analysis and discriminant analysis (PCA-DA) for discriminating profiles of terminal restriction fragment length polymorphism (T-RFLP) in soil bacterial communities
    • Park S., Ku Y.K., Seo M.J., Kim D.Y., Yeon J.E., Lee K.M., Jeong S.C., Yoon W.K., Harn C.H., and Kim H.M. Principal component analysis and discriminant analysis (PCA-DA) for discriminating profiles of terminal restriction fragment length polymorphism (T-RFLP) in soil bacterial communities. Soil Biol. Biochem. 38 (2006) 2344-2349
    • (2006) Soil Biol. Biochem. , vol.38 , pp. 2344-2349
    • Park, S.1    Ku, Y.K.2    Seo, M.J.3    Kim, D.Y.4    Yeon, J.E.5    Lee, K.M.6    Jeong, S.C.7    Yoon, W.K.8    Harn, C.H.9    Kim, H.M.10
  • 28
    • 4444293563 scopus 로고    scopus 로고
    • Plankton diversity in the Bay of Fundy as measured by morphological and molecular methods
    • Savin M.C., Martin J.L., LeGresley M., Giewat M., and Rooney-Varga J. Plankton diversity in the Bay of Fundy as measured by morphological and molecular methods. Microb. Ecol. 48 (2004) 51-65
    • (2004) Microb. Ecol. , vol.48 , pp. 51-65
    • Savin, M.C.1    Martin, J.L.2    LeGresley, M.3    Giewat, M.4    Rooney-Varga, J.5
  • 29
    • 84988158905 scopus 로고
    • Comparison between steady state and non-steady state competition: experiments with natural phytoplankton
    • Sommer U. Comparison between steady state and non-steady state competition: experiments with natural phytoplankton. Limnol. Oceanogr. 30 (1985) 335-346
    • (1985) Limnol. Oceanogr. , vol.30 , pp. 335-346
    • Sommer, U.1
  • 30
    • 14844347173 scopus 로고    scopus 로고
    • Phyto-specific 16S rDNA PCR primers for recovering algal and plant sequences from mixed samples
    • Stiller J.W., and McClanahan A. Phyto-specific 16S rDNA PCR primers for recovering algal and plant sequences from mixed samples. Mol. Ecol. Notes 5 (2005) 1-3
    • (2005) Mol. Ecol. Notes , vol.5 , pp. 1-3
    • Stiller, J.W.1    McClanahan, A.2
  • 31
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki M.T., and Giovannoni S.J. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62 (1996) 625-630
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 32
    • 0000954446 scopus 로고
    • Neue Wege in der quantitativen Erfassung des Planktons (mit besonderer Berücksichtigung des Ultraplanktons)
    • Utermöhl H. Neue Wege in der quantitativen Erfassung des Planktons (mit besonderer Berücksichtigung des Ultraplanktons). Verh. Int. Ver. Theor. Angew. Limnol. 5 (1931) 567-596
    • (1931) Verh. Int. Ver. Theor. Angew. Limnol. , vol.5 , pp. 567-596
    • Utermöhl, H.1
  • 33
    • 33746176105 scopus 로고    scopus 로고
    • A novel strategy to extract specific phylogenetic sequence information from community T-RFLP
    • Widmer F., Hartmann M., Frey B., and Kölliker R. A novel strategy to extract specific phylogenetic sequence information from community T-RFLP. J. Microbiol. Methods 66 (2006) 512-520
    • (2006) J. Microbiol. Methods , vol.66 , pp. 512-520
    • Widmer, F.1    Hartmann, M.2    Frey, B.3    Kölliker, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.