Analysis of the key functional genes in new aerobic degraders of dichloromethane

Microbiology

Volumn 79, Issue 1, 2010, Pages 66-72

  Firsova, J E ^a   Doronina, N V ^a   Trotsenko, Yu A ^a  

^a SKRYABIN INSTITUTE OF BIOCHEMISTRY AND PHYSIOLOGY OF MICROORGANISMS   (Russian Federation)

Author keywords

Aerobic methylotrophic bacteria; dcmA; dcmR genes; Dehalogenation; Dichloromethane

Indexed keywords

ANCYLOBACTER; BACTERIA (MICROORGANISMS); METHYLOBACTERIUM; METHYLOBACTERIUM DICHLOROMETHANICUM; METHYLORHABDUS MULTIVORANS;

EID: 77449107842     PISSN: 00262617     EISSN: None     Source Type: Journal    
DOI: 10.1134/S0026261710010091     Document Type: Article

References (19)

1. Keene, W. C., Khalil, M. A. K., Erikson, III, D. J., McCulloch, A., Graedel, T. E., Lobert, J. M., Aucott, M. L., Gong, S. L., Harper, D. B., Kleiman, G., Midgley, P., Moore, R. M., Seuzaret, C., Sturges, W. T., Benkovitz, C. M., Koropalov, V., Barrie, L. A., and Li, Y.-E, Composite Global Emissions of Reactive Chlorine from Anthropogenic and Natural Sources: Reactive Chlorine Emissions Inventory, Geophys. Res., 1999, vol. 104, pp. 8429-8440.
2. Vuilleumier, S. and Pagni, M., Bacterial Glutathione S-Transferases: New Lessons from Bacterial Genomes, Appl. Microbiol. Biotechnol., 2002, vol. 58, pp. 138-146.
3. La Roche, S. D. and Leisinger, T., Identification of dcmR, the Regulatory Gene Governing Expression of Dichloromethane Dehalogenase in Methylobacterium sp. DM4, J. Bacteriol., 1991, vol. 173, pp. 6714-6721.
4. Schmid-Appert, M., Zoller, K., Traber, H., Vuilleumier, S., and Leisinger, T., Association of Newly Discovered IS Elements with the Dichloromethane Utilization Genes of Methylotrophic Bacteria, Microbiology, 1997, vol. 143, pp. 2557-2567.
5. Trotsenko, Yu. A. and Doronina, N. V., The Biology of Methylobacteria Capable of Degrading Halomethanes, Mikrobiologiya, 2003, vol. 72, no. 2, pp. 149-160 [Microbiology (Engl. Transl.), vol. 72, no. 2, pp. 121-131].
6. Firsova, J. E., Doronina, N. V., Vuilleumier, S., and Trotsenko, Yu. A., Ancylobacter dichloromethanicus sp. nov.-A New Aerobic Facultatively Methylotrophic Bacterium Utilizing Dichloromethane, Syst. Appl. Microbiol., 2009 (in press).
7. Firsova, J. E., Doronina, N. V., Vuilleumier, S., and Trotsenko, Yu., Gottschalkia methylica gen. nov., sp. nov, a New Aerobic Facultatively Methylotrophic Bacterium Degrading Dichloromethane, Int. J. Syst. Evol. Microbiol., 2009. (in press).
8. Wilson, K., Current Protocols in Molecular Biology, New York: Wiley, 1997.
9. Lane, D. J, 16S/23S rRNA Sequencing, Nucleic Acid Techniques in Bacterial Systematics, Stackebrandt, E. and Goodfellow, M., Eds., Chichester: Wiley, 1991, pp. 115-175.
10. Vuilleumier, S., Ivos, N., Dean, M., and Leisinger, T., Sequence Variation in Dichloromethane Dehalogena-ses/Glutathione S-Transferases, Microbiology (UK), 2001, vol. 147, pp. 611-616.
11. McDonald, I. R. and Murrell, J. C., The Methanol Dehydrogenase Structural Gene mxaFand Its Use as a Functional Gene Probe for Methanotrophs and Meth-ylotrophs, Appl. Environ. Microbiol., 1997, vol. 63, no. 8, pp. 3218-3224.
12. van de Peer, Y. and de Wachter, R., TREECON for Windows: A Software Package for the Construction and Drawing of Evolutionary Trees for the Microsoft Windows Environment, Comput. Appl. Biosci., 1994, vol. 10, no. 5, pp. 569-570.
13. Kado, C. I. and Liu, S.-T, Rapid Procedure for Detection and Isolation of Large and Small Plas-mids, J. Bacteriol., 1981, vol. 1, no. 3, pp. 1365-1373.
14. Isidorov, V. A., Organic Chemistry of the Earth's Atmosphere, Berlin: Springer, 1990.
15. Dembitskii, V. M. and Tolstikov, G. A., Prirodnye galo-genirovannye organicheskie soedineniya (Natural Halogenated Organic Compounds), Novosibirsk: SO RAN, filial "Geo", 2003.
16. Trotsenko, Yu. A. and Torgonskaya, M. L., The Aerobic Degradation of Dichloromethane: Structural-Functional Aspects (A Review), Prikl. Biokhim. Mikrobiol., 2009, vol. 45, no. 3, pp. 261-276 [Appl. Biochem. Microbiol. (Engl. Transl.), vol. 45, no. 3, pp. 233-247].
17. Nikolausz, M., Kappelmeyer, U., Nijenhius, I., Ziller, K., and Kastner, M., Molecular Characterization of Dichloromethane-Degrading Hyphomicrobium Strains Using 16S rDNA and DCM Dehalogenase Gene Sequences, Syst. Appl. Microbiol., 2005, vol. 28, pp. 582-587.
18. Vuilleumier, S., in Biotechnology for the Environment, Agathos, S. and Reineke, W., Eds., Dordrecht, Netherlands: Kluwer Academic, 2001, vol. 3.
19. Poelarends, G. J., Kulakov, L. A., Larkin, M. J., van Hylckama Vleig, J. E. T., and Janssen, D. B., Roles of Horizontal Gene Transfer and Gene Integration in Evolution of 1, 3-Dichloropropene-and 1, 2-Dibromo-ethane-Degradative Pathways, J. Bacteriol., 2000, vol. 182, pp. 2191-2199.