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Volumn 4 LNICST, Issue PART 1, 2009, Pages 525-535

A bipartite graph based model of protein domain networks

Author keywords

Growing networks; Protein domains; Scale free networks

Indexed keywords

AMINO ACID SEQUENCE; BIPARTITE GRAPHS; EVOLUTIONARY MODELS; EXPONENTIAL DISTRIBUTIONS; FUNDAMENTAL UNITS; GROWTH PROCESS; HUMAN CELLS; MATHEMATICAL MODELING; PROTEIN DOMAINS; PROTEIN FUNCTIONS; PROTEIN STRUCTURES; SCALE FREE NETWORKS; SCALE-FREE DISTRIBUTIONS;

EID: 77249143622     PISSN: 18678211     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-642-02466-5_50     Document Type: Conference Paper
Times cited : (5)

References (29)
  • 2
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • DOI 10.1038/nrg1272
    • Barabási, A.-L., Oltvai, Z.N.: Network Biology: Understanding the Cells's Functional Organization. Nature Reviews Genetics 5, 101-113 (2004) (Pubitemid 38160277)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.2 , pp. 101-113
    • Barabasi, A.-L.1    Oltvai, Z.N.2
  • 6
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabási, A.-L., Albert, R.: Emergence of Scaling in Random Networks. Science 286, 509-512 (1999)
    • (1999) Science , vol.286 , pp. 509-512
    • Barabási, A.-L.1    Albert, R.2
  • 7
    • 0037199968 scopus 로고    scopus 로고
    • Hierarchical organization of modularity in metabolic networks
    • DOI 10.1126/science.1073374
    • Ravasz, E., Somera, A.L., Mongru, D.A., Oltvai, Z.N., Barabási, A.-L.: Hierarchical Organization of Modularity in Metabolic Networks. Science 297, 1551-1555 (2002) (Pubitemid 34971002)
    • (2002) Science , vol.297 , Issue.5586 , pp. 1551-1555
    • Ravasz, E.1    Somera, A.L.2    Mongru, D.A.3    Oltvai, Z.N.4    Barabasi, A.-L.5
  • 8
    • 0037174670 scopus 로고    scopus 로고
    • Network motifs: Simple building blocks of complex networks
    • DOI 10.1126/science.298.5594.824
    • Milo, R., Shen-Orr, S., Itzkovitz, S., Kashtan, N., Chklovskii, D., Alon, U.: Network Motifs: Simple Building Blocks of Complex Networks. Science 298, 824-827 (2002) (Pubitemid 35231534)
    • (2002) Science , vol.298 , Issue.5594 , pp. 824-827
    • Milo, R.1    Shen-Orr, S.2    Itzkovitz, S.3    Kashtan, N.4    Chklovskii, D.5    Alon, U.6
  • 9
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of escherichia coli
    • Shen-Orr, S., Milo, R., Mangan, S., Alon, U.: Network Motifs in the Transcriptional Regulation Network of Escherichia coli. Nat. Genetics 31, 64-68 (2002)
    • (2002) Nat. Genetics , vol.31 , pp. 64-68
    • Shen-Orr, S.1    Milo, R.2    Mangan, S.3    Alon, U.4
  • 10
    • 20444504323 scopus 로고    scopus 로고
    • Uncovering the overlapping community structure of complex networks in nature and society
    • DOI 10.1038/nature03607
    • Palla, G., Derenyi, I., Farkas, I., Vicsek, T.: Uncovering the Overlapping Community Structure of Complex Networks in Nature and Society. Nature 435, 814-818 (2005) (Pubitemid 40839731)
    • (2005) Nature , vol.435 , Issue.7043 , pp. 814-818
    • Palla, G.1    Derenyi, I.2    Farkas, I.3    Vicsek, T.4
  • 12
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • DOI 10.1038/35075138
    • Jeong, H., Mason, S., Barabási, A.-L., Oltvai, Z.N.: Lethality and Centrality in Protein Networks. Nature 411, 41-42 (2001) (Pubitemid 32428180)
    • (2001) Nature , vol.411 , Issue.6833 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabasi, A.-L.3    Oltvai, Z.N.4
  • 13
    • 0020742670 scopus 로고
    • Modzular structural units, exons, and function in chicken lysozyme
    • Go, M.: Modular Structural Units, Exons, and Function in Chicken Lysozyme. Proc. Natl. Acad. Sci. USA 80, 1964-1968 (1983)
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 1964-1968
    • Go, M.1
  • 14
    • 0019860994 scopus 로고
    • Correlation of DNA exonic regions with protein structural units in haemoglobin
    • DOI 10.1038/291090a0
    • Go, M.: Correlation of DNA Exonic Regions with Protein Structural Units in Haemoglobin. Nature 291, 90-92 (1981) (Pubitemid 11125263)
    • (1981) Nature , vol.291 , Issue.5810 , pp. 90-92
    • Go, M.1
  • 15
    • 0034887573 scopus 로고    scopus 로고
    • Scale-free behavior in protein domain networks
    • Wuchty, S.: Scale-free Behavior in Protein Domain Networks. Mol. Biol. Evo. 18, 1694-1702 (2001) (Pubitemid 32776920)
    • (2001) Molecular Biology and Evolution , vol.18 , Issue.9 , pp. 1694-1702
    • Wuchty, S.1
  • 16
    • 0041718387 scopus 로고    scopus 로고
    • Birth and death of protein domains: A simple model of evolution explains power law behavior
    • Karev, G.P., Wolf, Y.I., Rzhetsky, A.Y., Berezovskaya, F.S., Koonin, E.V.: Birth and Death of Protein Domains: A Simple Model of Evolution Explains Power Law Behavior. BMC Evo. Biol. 2, 18 (2002)
    • (2002) BMC Evo. Biol , vol.2 , pp. 18
    • Karev, G.P.1    Wolf, Y.I.2    Rzhetsky, A.Y.3    Berezovskaya, F.S.4    Koonin, E.V.5
  • 18
    • 0035420732 scopus 로고    scopus 로고
    • Random graphs with arbitrary degree distributions and their applications
    • Newman, M.E.J., Strogatz, S.H., Watts, D.J.: Random Graphs with Arbitrary Degree Distributions and Their Applications. Phys. Rev. E 64, 026118 (2001)
    • (2001) Phys. Rev. E , vol.64 , pp. 026118
    • Newman, M.E.J.1    Strogatz, S.H.2    Watts, D.J.3
  • 20
    • 37649031137 scopus 로고    scopus 로고
    • Infinite-order percolation and giant fluctuations in a protein interaction network
    • Kim, J., Krapivsky, P.L., Kahng, B., Redner, S.: Infinite-order Percolation and Giant Fluctuations in a Protein Interaction Network. Phys. Rev. E. 66, 055101 (2002)
    • (2002) Phys. Rev. E , vol.66 , pp. 055101
    • Kim, J.1    Krapivsky, P.L.2    Kahng, B.3    Redner, S.4
  • 21
    • 27944477692 scopus 로고    scopus 로고
    • Duplication-divergence model of protein interaction network
    • Ispolatov, I., Krapivsky, P.L., Yuryev, A.: Duplication-divergence Model of Protein Interaction Network. Phys. Rev. E. 71, 061911 (2005)
    • (2005) Phys. Rev. E , vol.71 , pp. 061911
    • Ispolatov, I.1    Krapivsky, P.L.2    Yuryev, A.3
  • 22
    • 0035363060 scopus 로고    scopus 로고
    • Organization of growing random networks
    • Krapivsky, P.L., Redner, S.: Organization of Growing Random Networks. Phys. Rev. E. 63, 066123 (2001)
    • (2001) Phys. Rev. E , vol.63 , pp. 066123
    • Krapivsky, P.L.1    Redner, S.2
  • 23
    • 37649029214 scopus 로고    scopus 로고
    • Rate equation approach for correlations in growing network models
    • Barrat, A., Pastor-Satorras, R.: Rate Equation Approach for Correlations in Growing Network Models. Phys. Rev. E 71, 036127 (2005)
    • (2005) Phys. Rev. E , vol.71 , pp. 036127
    • Barrat, A.1    Pastor-Satorras, R.2
  • 24
    • 33646983641 scopus 로고    scopus 로고
    • Rate equation approach for growing networks
    • Krapivsky, P.L., Redner, S.: Rate Equation Approach for Growing Networks. Lecture Notes in Physics 625, 3-22 (2003)
    • (2003) Lecture Notes in Physics , vol.625 , pp. 3-22
    • Krapivsky, P.L.1    Redner, S.2
  • 25
    • 0037092928 scopus 로고    scopus 로고
    • Human sexual contact network as a bipartite graph
    • DOI 10.1016/S0378-4371(02)00628-3, PII S0378437102006283
    • Ergün, G.: Human Sexual Contact Network as a Bipartite Graph. Physica A 308, 483-488 (2002) (Pubitemid 34524922)
    • (2002) Physica A: Statistical Mechanics and its Applications , vol.308 , Issue.1-4 , pp. 483-488
    • Ergun, G.1
  • 26
    • 38549097071 scopus 로고    scopus 로고
    • The UniProt consortium: The universal protein resource (UniProt)
    • The UniProt Consortium: The Universal Protein Resource (UniProt). Nucleic Acids Research 36, D190-D195 (2008)
    • (2008) Nucleic Acids Research , vol.36
  • 29
    • 4644326931 scopus 로고    scopus 로고
    • Genomic analysis of regulatory network dynamics reveals large topological changes
    • DOI 10.1038/nature02782
    • Luscombe, N.M., Babu, M.M., Yu, H., Snyder, M., Teichmann, S.A., Gerstein, M.: Genomic Analysis of Regulatory Network Dynamics Reveals Large Topological Changes. Nature 431, 308-312 (2004) (Pubitemid 39265665)
    • (2004) Nature , vol.431 , Issue.7006 , pp. 308-312
    • Luscombe, N.M.1    Babu, M.M.2    Yu, H.3    Snyder, M.4    Teichmann, S.A.5    Gerstein, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.