-
1
-
-
16244363320
-
Metal ions and RNA folding: A highly charged topicwith a dynamic future
-
Woodson SA (2005) Metal ions and RNA folding: a highly charged topicwith a dynamic future. Curr Opin Chem Biol, 9:104-109.
-
(2005)
Curr Opin Chem Biol
, vol.9
, pp. 104-109
-
-
Woodson, S.A.1
-
2
-
-
33846887629
-
Alternative roles for metal ions in enzyme catalysis and the implications for ribozyme chemistry
-
Sigel RK, Pyle AM (2007) Alternative roles for metal ions in enzyme catalysis and the implications for ribozyme chemistry. Chem Rev, 107:97-113.
-
(2007)
Chem Rev
, vol.107
, pp. 97-113
-
-
Sigel, R.K.1
Pyle, A.M.2
-
3
-
-
0038170017
-
Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P
-
Harris ME, Christian EL (2003) Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P. Curr Opin Struct Biol, 13:325-333.
-
(2003)
Curr Opin Struct Biol
, vol.13
, pp. 325-333
-
-
Harris, M.E.1
Christian, E.L.2
-
4
-
-
37549069403
-
Importance of RNA-protein interactions in bacterial ribonuclease P structure and catalysis
-
Smith JK, Hsieh J, Fierke CA (2007) Importance of RNA-protein interactions in bacterial ribonuclease P structure and catalysis. Biopolymers, 87:329-338.
-
(2007)
Biopolymers
, vol.87
, pp. 329-338
-
-
Smith, J.K.1
Hsieh, J.2
Fierke, C.A.3
-
6
-
-
4043057879
-
Analysis of solvent nucleophile isotope effects: Evidence for concerted mechanisms and nucleophilic activation by metal coordination in nonenzymatic and ribozyme-catalyzed phosphodiester hydrolysis
-
Cassano AG, Anderson VE, Harris ME (2004) Analysis of solvent nucleophile isotope effects: evidence for concerted mechanisms and nucleophilic activation by metal coordination in nonenzymatic and ribozyme-catalyzed phosphodiester hydrolysis. Biochemistry, 43:10547-10559.
-
(2004)
Biochemistry
, vol.43
, pp. 10547-10559
-
-
Cassano, A.G.1
Anderson, V.E.2
Harris, M.E.3
-
7
-
-
0037199416
-
The affinity of magnesium binding sites in the Bacillus subtilis RNase P x pre-tRNA complex is enhanced by the protein subunit
-
Kurz JC, Fierke CA (2002) The affinity of magnesium binding sites in the Bacillus subtilis RNase P x pre-tRNA complex is enhanced by the protein subunit. Biochemistry, 41:9545-9558.
-
(2002)
Biochemistry
, vol.41
, pp. 9545-9558
-
-
Kurz, J.C.1
Fierke, C.A.2
-
8
-
-
0032419499
-
On the role of magnesium ions in RNA stability
-
Misra VK, Draper DE (1998) On the role of magnesium ions in RNA stability. Biopolymers, 48:113-135.
-
(1998)
Biopolymers
, vol.48
, pp. 113-135
-
-
Misra, V.K.1
Draper, D.E.2
-
9
-
-
18244368739
-
Studies on Escherichia coli RNase P RNA with Zn2+ as the catalytic cofactor
-
Cuzic S, Hartmann RK (2005) Studies on Escherichia coli RNase P RNA with Zn2+ as the catalytic cofactor. Nucleic Acids Res, 33:2464-2474.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2464-2474
-
-
Cuzic, S.1
Hartmann, R.K.2
-
10
-
-
0031711821
-
Ribonuclease P: Unity and diversity in a tRNA processing ribozyme
-
Frank DN, Pace NR (1998) Ribonuclease P: Unity and diversity in a tRNA processing ribozyme. Annu Rev Biochem, 67:153-180.
-
(1998)
Annu Rev Biochem
, vol.67
, pp. 153-180
-
-
Frank, D.N.1
Pace, N.R.2
-
11
-
-
25644433566
-
Crystal structure of the RNA component of bacterial ribonuclease P
-
Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A (2005) Crystal structure of the RNA component of bacterial ribonuclease P. Nature, 437:584-587.
-
(2005)
Nature
, vol.437
, pp. 584-587
-
-
Torres-Larios, A.1
Swinger, K.K.2
Krasilnikov, A.S.3
Pan, T.4
Mondragon, A.5
-
12
-
-
0037055279
-
2+ binding near the active site of the enzyme
-
2+ binding near the active site of the enzyme. Gene, 294:177-185.
-
(2002)
Gene
, vol.294
, pp. 177-185
-
-
Rasmussen, T.A.1
Nolan, J.M.2
-
13
-
-
0031475158
-
In vitro selection for altered divalent metal specificity in the RNase P RNA
-
Frank DN, Pace NR (1997) In vitro selection for altered divalent metal specificity in the RNase P RNA. P Natl Acad Sci USA, 94:14355-14360.
-
(1997)
P Natl Acad Sci USA
, vol.94
, pp. 14355-14360
-
-
Frank, D.N.1
Pace, N.R.2
-
14
-
-
0036071392
-
Specific phosphorothioate substitutions probe the active site of Bacillus subtilis ribonuclease P
-
Crary SM, Kurz JC, Fierke CA (2002) Specific phosphorothioate substitutions probe the active site of Bacillus subtilis ribonuclease P. RNA, 8:933-947.
-
(2002)
RNA
, vol.8
, pp. 933-947
-
-
Crary, S.M.1
Kurz, J.C.2
Fierke, C.A.3
-
15
-
-
0034002685
-
Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme
-
Christian EL, Kaye NM, Harris ME (2000) Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme. RNA, 6:511-519.
-
(2000)
RNA
, vol.6
, pp. 511-519
-
-
Christian, E.L.1
Kaye, N.M.2
Harris, M.E.3
-
16
-
-
0029286551
-
Identification of phosphates involved in catalysis by the ribozyme RNase P RNA
-
Harris ME, Pace NR (1995) Identification of phosphates involved in catalysis by the ribozyme RNase P RNA. RNA, 1:210-218.
-
(1995)
RNA
, vol.1
, pp. 210-218
-
-
Harris, M.E.1
Pace, N.R.2
-
17
-
-
33746538312
-
The P4 metal binding site in RNase P RNA affects active site metal affinity through substrate positioning
-
Christian EL, Smith KM, Perera N, Harris ME (2006) The P4 metal binding site in RNase P RNA affects active site metal affinity through substrate positioning. RNA, 12:1463-1467.
-
(2006)
RNA
, vol.12
, pp. 1463-1467
-
-
Christian, E.L.1
Smith, K.M.2
Perera, N.3
Harris, M.E.4
-
18
-
-
58249114463
-
Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA
-
Kazantsev AV, Krivenko AA, Pace NR (2009) Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA. RNA, 15:266-276.
-
(2009)
RNA
, vol.15
, pp. 266-276
-
-
Kazantsev, A.V.1
Krivenko, A.A.2
Pace, N.R.3
-
19
-
-
33846443976
-
Structural plasticity and Mg2+ binding properties of RNase P P4 from combined analysis of NMR residual dipolar couplings and motionally decoupled spin relaxation
-
Getz MM, Andrews AJ, Fierke CA, Al-Hashimi HM (2007) Structural plasticity and Mg2+ binding properties of RNase P P4 from combined analysis of NMR residual dipolar couplings and motionally decoupled spin relaxation. RNA, 13:251-266.
-
(2007)
RNA
, vol.13
, pp. 251-266
-
-
Getz, M.M.1
Andrews, A.J.2
Fierke, C.A.3
Al-Hashimi, H.M.4
-
20
-
-
0026792946
-
Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysis
-
Smith D, Burgin AB, Haas ES, Pace NR (1992) Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysis. J Biol Chem, 267:2429-2436.
-
(1992)
J Biol Chem
, vol.267
, pp. 2429-2436
-
-
Smith, D.1
Burgin, A.B.2
Haas, E.S.3
Pace, N.R.4
-
21
-
-
0035818595
-
Metal ion cooperativity in ribozyme cleavage of RNA
-
Brannvall M, Kirsebom LA (2001) Metal ion cooperativity in ribozyme cleavage of RNA. P Natl Acad Sci USA, 98:12943-12947.
-
(2001)
P Natl Acad Sci USA
, vol.98
, pp. 12943-12947
-
-
Brannvall, M.1
Kirsebom, L.A.2
-
22
-
-
0041464604
-
Crystal structure of the leadzyme at 1.8 Å resolution: Metal ion binding and the implications for catalytic mechanism and allo site ion regulation
-
Wedekind JE, McKay DB (2003) Crystal structure of the leadzyme at 1.8 Å resolution: Metal ion binding and the implications for catalytic mechanism and allo site ion regulation. Biochemistry, 42:9554-9563.
-
(2003)
Biochemistry
, vol.42
, pp. 9554-9563
-
-
Wedekind, J.E.1
McKay, D.B.2
-
23
-
-
0033571104
-
The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges
-
Ennifar E, et al. (1999) The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges. Structure, 7:1439-1449.
-
(1999)
Structure
, vol.7
, pp. 1439-1449
-
-
Ennifar, E.1
-
24
-
-
11144335218
-
Characterization of "spectroscopically quiet" metals in biology
-
Penner-Hahn JE (2005) Characterization of "spectroscopically quiet" metals in biology. Coordin Chem Rev, 249:161-177.
-
(2005)
Coordin Chem Rev
, vol.249
, pp. 161-177
-
-
Penner-Hahn, J.E.1
-
26
-
-
0037044327
-
Pb EXAFS studies on DNA quadruplexes: Identification of metal ion binding site
-
Smirnov IV, Kotch FW, Pickering IJ, Davis JT, Shafer RH (2002) Pb EXAFS studies on DNA quadruplexes: Identification of metal ion binding site. Biochemistry, 41:12133-12139.
-
(2002)
Biochemistry
, vol.41
, pp. 12133-12139
-
-
Smirnov, I.V.1
Kotch, F.W.2
Pickering, I.J.3
Davis, J.T.4
Shafer, R.H.5
-
27
-
-
0027400338
-
2+(aq) binding sites
-
2+(aq) binding sites. J Inorg Biochem, 49:171-175.
-
(1993)
J Inorg Biochem
, vol.49
, pp. 171-175
-
-
Cowan, J.A.1
-
28
-
-
0033835305
-
Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA
-
Schmitz M, Tinoco I Jr (2000) Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6:1212-1225.
-
(2000)
RNA
, vol.6
, pp. 1212-1225
-
-
Schmitz, M.1
Tinoco Jr, I.2
-
29
-
-
34548518530
-
The 2 Å structure of helix 6 of the human signal recognition particle RNA
-
Wild K, Weichenrieder O, Leonard GA, Cusack S (1999) The 2 Å structure of helix 6 of the human signal recognition particle RNA. Structure, 7:1345-1352.
-
(1999)
Structure
, vol.7
, pp. 1345-1352
-
-
Wild, K.1
Weichenrieder, O.2
Leonard, G.A.3
Cusack, S.4
-
30
-
-
0035923441
-
Identification and characterization of a divalent metal ion-dependent cleavage site in the hammerhead ribozyme
-
Markley JC, Godde F, Sigurdsson ST (2001) Identification and characterization of a divalent metal ion-dependent cleavage site in the hammerhead ribozyme. Biochemistry, 40:13849-13856.
-
(2001)
Biochemistry
, vol.40
, pp. 13849-13856
-
-
Markley, J.C.1
Godde, F.2
Sigurdsson, S.T.3
-
31
-
-
38349100453
-
Synthetic antibodies for specific recognition and crystallization of structured RNA
-
Ye JD, et al. (2008) Synthetic antibodies for specific recognition and crystallization of structured RNA. P Natl Acad Sci USA, 105:82-87.
-
(2008)
P Natl Acad Sci USA
, vol.105
, pp. 82-87
-
-
Ye, J.D.1
-
32
-
-
0000774586
-
Bond valence sum analysis of metal-ligand bond lengths in metalloenzymes and model complexes
-
Thorp HH (1992) Bond valence sum analysis of metal-ligand bond lengths in metalloenzymes and model complexes. J Inorg Chem, 31:1585-1588.
-
(1992)
J Inorg Chem
, vol.31
, pp. 1585-1588
-
-
Thorp, H.H.1
-
33
-
-
0024819449
-
Synthesis of small RNAs using T7 RNA polymerase
-
Milligan JF, Uhlenbeck OC (1989) Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol, 180:51-62.
-
(1989)
Methods Enzymol
, vol.180
, pp. 51-62
-
-
Milligan, J.F.1
Uhlenbeck, O.C.2
-
34
-
-
0043022293
-
Structural characterization of the zinc site in protein farnesyltransferase
-
Tobin DA, Pickett JS, Hartman HL, Fierke CA, Penner-Hahn JE (2003) Structural characterization of the zinc site in protein farnesyltransferase. J Am Chem Soc, 125:9962-9969.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 9962-9969
-
-
Tobin, D.A.1
Pickett, J.S.2
Hartman, H.L.3
Fierke, C.A.4
Penner-Hahn, J.E.5
-
37
-
-
0032569167
-
The limitations of X-ray absorption spectroscopy for determining the structure of zinc sites in proteins. When is a tetrathiolate not a tetrathiolate?
-
Clark-Baldwin K, et al. (1998) The limitations of X-ray absorption spectroscopy for determining the structure of zinc sites in proteins. When is a tetrathiolate not a tetrathiolate?. J Am Chem Soc, 120:8401-8409.
-
(1998)
J Am Chem Soc
, vol.120
, pp. 8401-8409
-
-
Clark-Baldwin, K.1
-
38
-
-
0013694678
-
Multiple-scattering calculations of x-ray-absorption spectra
-
Zabinsky SI, Rehr JJ, Ankudinov A, Albers RC, Eller MJ (1995) Multiple-scattering calculations of x-ray-absorption spectra. Phys Rev B, 52:2995-3009.
-
(1995)
Phys Rev B
, vol.52
, pp. 2995-3009
-
-
Zabinsky, S.I.1
Rehr, J.J.2
Ankudinov, A.3
Albers, R.C.4
Eller, M.J.5
-
40
-
-
0037294245
-
EXAFS studies of the zinc sites of UDP-(3-O-acyl)-N-acetylglucosamine deacetylase (LpxC)
-
McClure CP, et al. (2003) EXAFS studies of the zinc sites of UDP-(3-O-acyl)-N-acetylglucosamine deacetylase (LpxC). J Inorg Biochem, 94:78-85.
-
(2003)
J Inorg Biochem
, vol.94
, pp. 78-85
-
-
McClure, C.P.1
-
41
-
-
0033170452
-
Optimization of three-dimensional TROSY-type HCCH NMR correlation of aromatic (1)H-(13)C groups in proteins
-
Meissner A, Sorensen OW (1999) Optimization of three-dimensional TROSY-type HCCH NMR correlation of aromatic (1)H-(13)C groups in proteins. J Magn Reson, 139:447-450.
-
(1999)
J Magn Reson
, vol.139
, pp. 447-450
-
-
Meissner, A.1
Sorensen, O.W.2
-
42
-
-
0031174215
-
Integration of spin-state-selective excitation into 2D NMR correlation experiments with the heteronuclear ZQ/2Q pi rotations for 1JXH- resolved E.COSY-type measurements of heteronuclear coupling constants in proteins
-
Meissner A, Duus JO, Sorensen OW (1997) Integration of spin-state-selective excitation into 2D NMR correlation experiments with the heteronuclear ZQ/2Q pi rotations for 1JXH- resolved E.COSY-type measurements of heteronuclear coupling constants in proteins. J Biomol NMR, 10:89-94.
-
(1997)
J Biomol NMR
, vol.10
, pp. 89-94
-
-
Meissner, A.1
Duus, J.O.2
Sorensen, O.W.3
-
43
-
-
0029400480
-
NMRPipe: Amultidimensional spectral processing system based on UNIX pipes
-
Delaglio F, et al. (1995) NMRPipe: Amultidimensional spectral processing system based on UNIX pipes. J Biomol NMR, 6:277-293.
-
(1995)
J Biomol NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
-
44
-
-
0028651908
-
Determination of the three-dimensional structure of margatoxin by 1H, 13C, 15N triple-resonance nuclear magnetic resonance spectroscopy
-
Johnson BA, Stevens SP,Williamson JM (1994) Determination of the three-dimensional structure of margatoxin by 1H, 13C, 15N triple-resonance nuclear magnetic resonance spectroscopy. Biochemistry, 33:15061-15070.
-
(1994)
Biochemistry
, vol.33
, pp. 15061-15070
-
-
Johnson, B.A.1
Stevens, S.P.2
Williamson, J.M.3
|