메뉴 건너뛰기




Volumn 12, Issue 8, 2006, Pages 1463-1467

The P4 metal binding site in RNase P RNA affects active site metal affinity through substrate positioning

Author keywords

Catalysis; Metal ion; RNase P; Substrate recognition

Indexed keywords

MAGNESIUM ION; RIBONUCLEASE P; RIBOZYME; RNA; TRANSFER RNA;

EID: 33746538312     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.158606     Document Type: Article
Times cited : (43)

References (21)
  • 1
    • 0029795042 scopus 로고    scopus 로고
    • Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp
    • Beebe, J.A., Kurz, J.C., and Fierke, C.A. 1996. Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp. Biochemistry 35: 10493-10505.
    • (1996) Biochemistry , vol.35 , pp. 10493-10505
    • Beebe, J.A.1    Kurz, J.C.2    Fierke, C.A.3
  • 2
    • 0034002685 scopus 로고    scopus 로고
    • Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme
    • Christian, E.L., Kaye, N.M., and Harris, M.E. 2000. Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme. RNA 6: 511-519.
    • (2000) RNA , vol.6 , pp. 511-519
    • Christian, E.L.1    Kaye, N.M.2    Harris, M.E.3
  • 3
    • 0036566051 scopus 로고    scopus 로고
    • Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA
    • _. 2002. Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA. EMBO J. 21: 2253-2262.
    • (2002) EMBO J. , vol.21 , pp. 2253-2262
  • 4
    • 0036071392 scopus 로고    scopus 로고
    • Specific phosphorothioate substitutions probe the active site of Bacillus subtilis ribonuclease P
    • Crary, S.M., Kurz, J.C., and Fierke, C.A. 2002. Specific phosphorothioate substitutions probe the active site of Bacillus subtilis ribonuclease P. RNA 8: 933-947.
    • (2002) RNA , vol.8 , pp. 933-947
    • Crary, S.M.1    Kurz, J.C.2    Fierke, C.A.3
  • 6
    • 0031475158 scopus 로고    scopus 로고
    • In vitro selection for altered divalent metal specificity in the RNase P RNA
    • Frank, D.N. and Pace, N.R. 1997. In vitro selection for altered divalent metal specificity in the RNase P RNA. Proc. Natl. Acad. Sci. 94: 14355-14360.
    • (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 14355-14360
    • Frank, D.N.1    Pace, N.R.2
  • 7
    • 0038170017 scopus 로고    scopus 로고
    • Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P
    • Harris, M.E. and Christian, E.L. 2003. Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P. Curr. Opin. Struct. Biol. 13: 325-333.
    • (2003) Curr. Opin. Struct. Biol. , vol.13 , pp. 325-333
    • Harris, M.E.1    Christian, E.L.2
  • 8
    • 0031010235 scopus 로고    scopus 로고
    • Analysis of the tertiary structure of the ribonuclease P ribozyme-substrate complex by site-specific photoaffinity crosslinking
    • Harris, M.E., Kazantsev, A.V., Chen, J.L., and Pace, N.R. 1997. Analysis of the tertiary structure of the ribonuclease P ribozyme-substrate complex by site-specific photoaffinity crosslinking. RNA 3: 561-576.
    • (1997) RNA , vol.3 , pp. 561-576
    • Harris, M.E.1    Kazantsev, A.V.2    Chen, J.L.3    Pace, N.R.4
  • 9
    • 0036445585 scopus 로고    scopus 로고
    • Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA
    • Kaye, N.M., Zahler, N.H., Christian, E.L., and Harris, M.E. 2002. Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA. J. Mol. Biol. 324: 429-442.
    • (2002) J. Mol. Biol. , vol.324 , pp. 429-442
    • Kaye, N.M.1    Zahler, N.H.2    Christian, E.L.3    Harris, M.E.4
  • 11
    • 0033779905 scopus 로고    scopus 로고
    • Ribonuclease P: A ribonucleoprotein enzyme
    • Kurz, J.C. and Fierke, C.A. 2000. Ribonuclease P: A ribonucleoprotein enzyme. Curr. Opin. Chem. Biol. 4: 553-558.
    • (2000) Curr. Opin. Chem. Biol. , vol.4 , pp. 553-558
    • Kurz, J.C.1    Fierke, C.A.2
  • 12
    • 0026680843 scopus 로고
    • Site-specific modification of pre-mRNA: The 2′-hydroxyl groups at the splice sites
    • Moore, M.J. and Sharp, P.A. 1992. Site-specific modification of pre-mRNA: The 2′-hydroxyl groups at the splice sites. Science 256: 992-997.
    • (1992) Science , vol.256 , pp. 992-997
    • Moore, M.J.1    Sharp, P.A.2
  • 13
    • 0033605081 scopus 로고    scopus 로고
    • Pathway modulation, circular permutation, and rapid RNA folding under kinetic control
    • Pan, T., Fang, X., and Sosnick, T. 1999. Pathway modulation, circular permutation, and rapid RNA folding under kinetic control. J. Mol. Biol. 286: 721-731.
    • (1999) J. Mol. Biol. , vol.286 , pp. 721-731
    • Pan, T.1    Fang, X.2    Sosnick, T.3
  • 14
    • 0033600571 scopus 로고    scopus 로고
    • Probing the role of metal ions in RNA catalysis: Kinetic and thermodynamic characterization of a metal ion interaction with the 2′-moiety of the guanosine nucleophile in the Tetrahymena group I ribozyme
    • Shan, S.O. and Herschlag, D. 1999. Probing the role of metal ions in RNA catalysis: Kinetic and thermodynamic characterization of a metal ion interaction with the 2′-moiety of the guanosine nucleophile in the Tetrahymena group I ribozyme. Biochemistry 38: 10958-10975.
    • (1999) Biochemistry , vol.38 , pp. 10958-10975
    • Shan, S.O.1    Herschlag, D.2
  • 15
    • 0035340961 scopus 로고    scopus 로고
    • Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction
    • Shan, S., Kravchuk, A.V., Piccirilli, J.A., and Herschlag, D. 2001. Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction. Biochemistry 40: 5161-5171.
    • (2001) Biochemistry , vol.40 , pp. 5161-5171
    • Shan, S.1    Kravchuk, A.V.2    Piccirilli, J.A.3    Herschlag, D.4
  • 16
    • 0026102040 scopus 로고
    • Configurationally defined phosphorothioate-containing oligoribonucleotides in the study of the mechanism of cleavage of hammerhead ribozymes
    • Slim, G. and Gait, M.J. 1991. Configurationally defined phosphorothioate-containing oligoribonucleotides in the study of the mechanism of cleavage of hammerhead ribozymes. Nucleic Acids Res. 19: 1183-1188.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1183-1188
    • Slim, G.1    Gait, M.J.2
  • 17
    • 0027256149 scopus 로고
    • Multiple magnesium ions in the ribonuclease P reaction mechanism
    • Smith, D. and Pace, N.R. 1993. Multiple magnesium ions in the ribonuclease P reaction mechanism. Biochemistry 32: 5273-5281.
    • (1993) Biochemistry , vol.32 , pp. 5273-5281
    • Smith, D.1    Pace, N.R.2
  • 18
    • 0026792946 scopus 로고
    • Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysis
    • Smith, D., Burgin, A.B., Haas, E.S., and Pace, N.R. 1992. Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysis. J. Biol. Chem. 267: 2429-2436.
    • (1992) J. Biol. Chem. , vol.267 , pp. 2429-2436
    • Smith, D.1    Burgin, A.B.2    Haas, E.S.3    Pace, N.R.4
  • 20
    • 0029810895 scopus 로고    scopus 로고
    • Ribonuclease P (RNase P) RNA is converted to a Cd(2+)-ribozyme by a single Rp-phosphorothioate modification in the precursor tRNA at the RNase P cleavage site
    • Warnecke, J.M., Furste, J.P., Hardt, W.D., Erdmann, V.A., and Hartmann, R.K. 1996. Ribonuclease P (RNase P) RNA is converted to a Cd(2+)-ribozyme by a single Rp-phosphorothioate modification in the precursor tRNA at the RNase P cleavage site. Proc. Natl. Acad. Sci. 93: 8924-8928.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 8924-8928
    • Warnecke, J.M.1    Furste, J.P.2    Hardt, W.D.3    Erdmann, V.A.4    Hartmann, R.K.5
  • 21
    • 0033538479 scopus 로고    scopus 로고
    • Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis
    • Warnecke, J.M., Held, R., Busch, S., and Hartmann, R.K. 1999. Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis. J. Mol. Biol. 290: 433-445.
    • (1999) J. Mol. Biol. , vol.290 , pp. 433-445
    • Warnecke, J.M.1    Held, R.2    Busch, S.3    Hartmann, R.K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.