메뉴 건너뛰기




Volumn 397, Issue 1, 2010, Pages 249-259

Specific Structural Features of the N-Acetylmuramoyl-l-Alanine Amidase AmiD from Escherichia coli and Mechanistic Implications for Enzymes of This Family

Author keywords

amidase activity; lipoprotein; metallo enzyme; peptidoglycan metabolism; peptidoglycan recognition protein (PGRP)

Indexed keywords

AMIDASE; APOENZYME; HOLOENZYME; LYSOZYME; N ACETYLMURAMOYLALANINE AMIDASE; N ACETYLMURAMOYLALANINE AMIDASE AMID; PEPTIDOGLYCAN; UNCLASSIFIED DRUG; ZINC AMIDASE;

EID: 77249102992     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2009.12.038     Document Type: Article
Times cited : (45)

References (43)
  • 3
    • 0034945221 scopus 로고    scopus 로고
    • Involvement of N-acetylmuramyl-l-alanine amidases in cell separation and antibiotic-induced autolysis of Escherichia coli
    • Heidrich C., Templin M.F., Ursinus A., Merdanovic M., Berger J., Schwarz H., et al. Involvement of N-acetylmuramyl-l-alanine amidases in cell separation and antibiotic-induced autolysis of Escherichia coli. Mol. Microbiol. 41 (2001) 167-178
    • (2001) Mol. Microbiol. , vol.41 , pp. 167-178
    • Heidrich, C.1    Templin, M.F.2    Ursinus, A.3    Merdanovic, M.4    Berger, J.5    Schwarz, H.6
  • 4
    • 34547613915 scopus 로고    scopus 로고
    • An anhydro-N-acetylmuramyl-l-alanine amidase with broad specificity tethered to the outer membrane of Escherichia coli
    • Uehara T., and Park J.T. An anhydro-N-acetylmuramyl-l-alanine amidase with broad specificity tethered to the outer membrane of Escherichia coli. J. Bacteriol. 189 (2007) 5634-5641
    • (2007) J. Bacteriol. , vol.189 , pp. 5634-5641
    • Uehara, T.1    Park, J.T.2
  • 5
    • 0028986826 scopus 로고
    • AmpD, essential for both β-lactamase regulation and cell wall recycling, is a novel cytosolic N-acetylmuramyl-l-alanine amidase
    • Jacobs C., Joris B., Jamin M., Klarsov K., Van Beeumen J., Mengin-Lecreulx D., et al. AmpD, essential for both β-lactamase regulation and cell wall recycling, is a novel cytosolic N-acetylmuramyl-l-alanine amidase. Mol. Microbiol. 15 (1995) 553-559
    • (1995) Mol. Microbiol. , vol.15 , pp. 553-559
    • Jacobs, C.1    Joris, B.2    Jamin, M.3    Klarsov, K.4    Van Beeumen, J.5    Mengin-Lecreulx, D.6
  • 6
    • 67649994325 scopus 로고    scopus 로고
    • Substrate-induced inactivation of the Escherichia coli AmiD N-acetylmuramoyl-l-alanine amidase highlights a new strategy to inhibit this class of enzyme
    • Pennartz A., Genereux C., Parquet C., Mengin-Lecreulx D., and Joris B. Substrate-induced inactivation of the Escherichia coli AmiD N-acetylmuramoyl-l-alanine amidase highlights a new strategy to inhibit this class of enzyme. Antimicrob. Agents Chemother. 53 (2009) 2991-2997
    • (2009) Antimicrob. Agents Chemother. , vol.53 , pp. 2991-2997
    • Pennartz, A.1    Genereux, C.2    Parquet, C.3    Mengin-Lecreulx, D.4    Joris, B.5
  • 7
    • 0028147092 scopus 로고
    • Bacterial cell wall recycling provides cytosolic muropeptides as effectors for β-lactamase induction
    • Jacobs C., Huang L.J., Bartowsky E., Normark S., and Park J.T. Bacterial cell wall recycling provides cytosolic muropeptides as effectors for β-lactamase induction. EMBO J. 13 (1994) 4684-4694
    • (1994) EMBO J. , vol.13 , pp. 4684-4694
    • Jacobs, C.1    Huang, L.J.2    Bartowsky, E.3    Normark, S.4    Park, J.T.5
  • 8
    • 0343632366 scopus 로고    scopus 로고
    • Cytosolic intermediates for cell wall biosynthesis and degradation control inducible β-lactam resistance in gram-negative bacteria
    • Jacobs C., Frere J.M., and Normark S. Cytosolic intermediates for cell wall biosynthesis and degradation control inducible β-lactam resistance in gram-negative bacteria. Cell 88 (1997) 823-832
    • (1997) Cell , vol.88 , pp. 823-832
    • Jacobs, C.1    Frere, J.M.2    Normark, S.3
  • 9
    • 0348048803 scopus 로고    scopus 로고
    • Peptidoglycan recognition proteins (PGRPs)
    • Dziarski R. Peptidoglycan recognition proteins (PGRPs). Mol. Immunol. 40 (2004) 877-886
    • (2004) Mol. Immunol. , vol.40 , pp. 877-886
    • Dziarski, R.1
  • 10
    • 34247134954 scopus 로고    scopus 로고
    • Peptidoglycan detection by mammals and flies
    • Chaput C., and Boneca I.G. Peptidoglycan detection by mammals and flies. Microbes Infect. 9 (2007) 637-647
    • (2007) Microbes Infect. , vol.9 , pp. 637-647
    • Chaput, C.1    Boneca, I.G.2
  • 11
    • 0037470091 scopus 로고    scopus 로고
    • A scavenger function for a Drosophila peptidoglycan recognition protein
    • Mellroth P., Karlsson J., and Steiner H. A scavenger function for a Drosophila peptidoglycan recognition protein. J. Biol. Chem. 278 (2003) 7059-7064
    • (2003) J. Biol. Chem. , vol.278 , pp. 7059-7064
    • Mellroth, P.1    Karlsson, J.2    Steiner, H.3
  • 12
    • 0028223308 scopus 로고
    • The structure of bacteriophage T7 lysozyme, a zinc amidase and an inhibitor of T7 RNA polymerase
    • Cheng X., Zhang X., Pflugrath J.W., and Studier F.W. The structure of bacteriophage T7 lysozyme, a zinc amidase and an inhibitor of T7 RNA polymerase. Proc. Natl Acad. Sci. USA 91 (1994) 4034-4038
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 4034-4038
    • Cheng, X.1    Zhang, X.2    Pflugrath, J.W.3    Studier, F.W.4
  • 13
    • 3042613815 scopus 로고    scopus 로고
    • Crystal structure of the Drosophila peptidoglycan recognition protein (PGRP)-SA at 1.56 A resolution
    • Reiser J.B., Teyton L., and Wilson I.A. Crystal structure of the Drosophila peptidoglycan recognition protein (PGRP)-SA at 1.56 A resolution. J. Mol. Biol. 340 (2004) 909-917
    • (2004) J. Mol. Biol. , vol.340 , pp. 909-917
    • Reiser, J.B.1    Teyton, L.2    Wilson, I.A.3
  • 15
    • 34547404301 scopus 로고    scopus 로고
    • Structural insights into the bactericidal mechanism of human peptidoglycan recognition proteins
    • Cho S., Wang Q., Swaminathan C.P., Hesek D., Lee M., Boons G.J., et al. Structural insights into the bactericidal mechanism of human peptidoglycan recognition proteins. Proc. Natl Acad. Sci. USA 104 (2007) 8761-8766
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 8761-8766
    • Cho, S.1    Wang, Q.2    Swaminathan, C.P.3    Hesek, D.4    Lee, M.5    Boons, G.J.6
  • 16
    • 22544477068 scopus 로고    scopus 로고
    • Structure of the ectodomain of Drosophila peptidoglycan-recognition protein LCa suggests a molecular mechanism for pattern recognition
    • Chang C.I., Ihara K., Chelliah Y., Mengin-Lecreulx D., Wakatsuki S., and Deisenhofer J. Structure of the ectodomain of Drosophila peptidoglycan-recognition protein LCa suggests a molecular mechanism for pattern recognition. Proc. Natl Acad. Sci. USA 102 (2005) 10279-10284
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 10279-10284
    • Chang, C.I.1    Ihara, K.2    Chelliah, Y.3    Mengin-Lecreulx, D.4    Wakatsuki, S.5    Deisenhofer, J.6
  • 17
    • 33645236166 scopus 로고    scopus 로고
    • Structure of tracheal cytotoxin in complex with a heterodimeric pattern-recognition receptor
    • Chang C.I., Chelliah Y., Borek D., Mengin-Lecreulx D., and Deisenhofer J. Structure of tracheal cytotoxin in complex with a heterodimeric pattern-recognition receptor. Science 311 (2006) 1761-1764
    • (2006) Science , vol.311 , pp. 1761-1764
    • Chang, C.I.1    Chelliah, Y.2    Borek, D.3    Mengin-Lecreulx, D.4    Deisenhofer, J.5
  • 18
    • 0042195829 scopus 로고    scopus 로고
    • Crystal structure of peptidoglycan recognition protein LB from Drosophila melanogaster
    • Kim M.S., Byun M., and Oh B.H. Crystal structure of peptidoglycan recognition protein LB from Drosophila melanogaster. Nat. Immunol. 4 (2003) 787-793
    • (2003) Nat. Immunol. , vol.4 , pp. 787-793
    • Kim, M.S.1    Byun, M.2    Oh, B.H.3
  • 19
    • 0036108484 scopus 로고    scopus 로고
    • 3D domain swapping: as domains continue to swap
    • Liu Y., and Eisenberg D. 3D domain swapping: as domains continue to swap. Protein Sci. 11 (2002) 1285-1299
    • (2002) Protein Sci. , vol.11 , pp. 1285-1299
    • Liu, Y.1    Eisenberg, D.2
  • 20
    • 56649103902 scopus 로고    scopus 로고
    • Searching protein structure databases with DaliLite v.3
    • Holm L., Kaariainen S., Rosenstrom P., and Schenkel A. Searching protein structure databases with DaliLite v.3. Bioinformatics 24 (2008) 2780-2781
    • (2008) Bioinformatics , vol.24 , pp. 2780-2781
    • Holm, L.1    Kaariainen, S.2    Rosenstrom, P.3    Schenkel, A.4
  • 22
    • 0028805811 scopus 로고
    • Stromelysin-1: three-dimensional structure of the inhibited catalytic domain and of the C-truncated proenzyme
    • Becker J.W., Marcy A.I., Rokosz L.L., Axel M.G., Burbaum J.J., Fitzgerald P.M., et al. Stromelysin-1: three-dimensional structure of the inhibited catalytic domain and of the C-truncated proenzyme. Protein Sci. 4 (1995) 1966-1976
    • (1995) Protein Sci. , vol.4 , pp. 1966-1976
    • Becker, J.W.1    Marcy, A.I.2    Rokosz, L.L.3    Axel, M.G.4    Burbaum, J.J.5    Fitzgerald, P.M.6
  • 23
    • 27744500926 scopus 로고    scopus 로고
    • Streptomyces albus G d-Ala-d-Ala carboxypeptidase
    • Messerschmidt A., CYgler M., and Bode W. (Eds), Wiley and Sons, Chichester, Wesr Sussex, England
    • Charlier P., Wery J.P., Dideberg O., and Frère J.M. Streptomyces albus G d-Ala-d-Ala carboxypeptidase. In: Messerschmidt A., CYgler M., and Bode W. (Eds). Handbook of metalloproteins vol. 3 (2004), Wiley and Sons, Chichester, Wesr Sussex, England 164-175
    • (2004) Handbook of metalloproteins , vol.3 , pp. 164-175
    • Charlier, P.1    Wery, J.P.2    Dideberg, O.3    Frère, J.M.4
  • 24
    • 34547897398 scopus 로고    scopus 로고
    • Muralytic activity and modular structure of the endolysins of Pseudomonas aeruginosa bacteriophages φ{symbol}KZ and EL
    • Briers Y., Volckaert G., Cornelissen A., Lagaert S., Michiels C.W., Hertveldt K., and Lavigne R. Muralytic activity and modular structure of the endolysins of Pseudomonas aeruginosa bacteriophages φ{symbol}KZ and EL. Mol. Microbiol. 65 (2007) 1334-1344
    • (2007) Mol. Microbiol. , vol.65 , pp. 1334-1344
    • Briers, Y.1    Volckaert, G.2    Cornelissen, A.3    Lagaert, S.4    Michiels, C.W.5    Hertveldt, K.6    Lavigne, R.7
  • 25
    • 27444432629 scopus 로고    scopus 로고
    • Structure and lytic activity of a Bacillus anthracis prophage endolysin
    • Low L.Y., Yang C., Perego M., Osterman A., and Liddington R.C. Structure and lytic activity of a Bacillus anthracis prophage endolysin. J. Biol. Chem. 280 (2005) 35433-35439
    • (2005) J. Biol. Chem. , vol.280 , pp. 35433-35439
    • Low, L.Y.1    Yang, C.2    Perego, M.3    Osterman, A.4    Liddington, R.C.5
  • 26
    • 0345269183 scopus 로고    scopus 로고
    • NMR structure of Citrobacter freundii AmpD, comparison with bacteriophage T7 lysozyme and homology with PGRP domains
    • Liepinsh E., Genereux C., Dehareng D., Joris B., and Otting G. NMR structure of Citrobacter freundii AmpD, comparison with bacteriophage T7 lysozyme and homology with PGRP domains. J. Mol. Biol. 327 (2003) 833-842
    • (2003) J. Mol. Biol. , vol.327 , pp. 833-842
    • Liepinsh, E.1    Genereux, C.2    Dehareng, D.3    Joris, B.4    Otting, G.5
  • 27
    • 33751066117 scopus 로고    scopus 로고
    • The crystal structure of the bacteriophage PSA endolysin reveals a unique fold responsible for specific recognition of Listeria cell walls
    • Korndorfer I.P., Danzer J., Schmelcher M., Zimmer M., Skerra A., and Loessner M.J. The crystal structure of the bacteriophage PSA endolysin reveals a unique fold responsible for specific recognition of Listeria cell walls. J. Mol. Biol. 364 (2006) 678-689
    • (2006) J. Mol. Biol. , vol.364 , pp. 678-689
    • Korndorfer, I.P.1    Danzer, J.2    Schmelcher, M.3    Zimmer, M.4    Skerra, A.5    Loessner, M.J.6
  • 28
    • 33646140122 scopus 로고    scopus 로고
    • Crystal structure of human peptidoglycan recognition protein I α bound to a muramyl pentapeptide from Gram-positive bacteria
    • Guan R., Brown P.H., Swaminathan C.P., Roychowdhury A., Boons G.J., and Mariuzza R.A. Crystal structure of human peptidoglycan recognition protein I α bound to a muramyl pentapeptide from Gram-positive bacteria. Protein Sci. 15 (2006) 1199-1206
    • (2006) Protein Sci. , vol.15 , pp. 1199-1206
    • Guan, R.1    Brown, P.H.2    Swaminathan, C.P.3    Roychowdhury, A.4    Boons, G.J.5    Mariuzza, R.A.6
  • 30
    • 57649141129 scopus 로고    scopus 로고
    • Thermolysin
    • Messerschmidt A., CYgler M., and Bode W. (Eds), Wiley
    • Matthews B.W. Thermolysin. In: Messerschmidt A., CYgler M., and Bode W. (Eds). Handbook of metalloproteins vol. 3 (2004), Wiley 85-94
    • (2004) Handbook of metalloproteins , vol.3 , pp. 85-94
    • Matthews, B.W.1
  • 31
    • 0021744255 scopus 로고
    • An interactive computer graphics study of thermolysin-catalyzed peptide cleavage and inhibition by N-carboxymethyl dipeptides
    • Hangauer D.G., Monzingo A.F., and Matthews B.W. An interactive computer graphics study of thermolysin-catalyzed peptide cleavage and inhibition by N-carboxymethyl dipeptides. Biochemistry 23 (1984) 5730-5741
    • (1984) Biochemistry , vol.23 , pp. 5730-5741
    • Hangauer, D.G.1    Monzingo, A.F.2    Matthews, B.W.3
  • 32
    • 0346822374 scopus 로고    scopus 로고
    • Human peptidoglycan recognition protein-L is an N-acetylmuramoyl-l-alanine amidase
    • Wang Z.M., Li X., Cocklin R.R., Wang M., Fukase K., Inamura S., et al. Human peptidoglycan recognition protein-L is an N-acetylmuramoyl-l-alanine amidase. J. Biol. Chem. 278 (2003) 49044-49052
    • (2003) J. Biol. Chem. , vol.278 , pp. 49044-49052
    • Wang, Z.M.1    Li, X.2    Cocklin, R.R.3    Wang, M.4    Fukase, K.5    Inamura, S.6
  • 34
    • 0027879008 scopus 로고
    • Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
    • Kabsch W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallogr. 26 (1993) 795-800
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 795-800
    • Kabsch, W.1
  • 35
    • 0028103275 scopus 로고    scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • (1994). The CCP4 suite: programs for protein crystallography. Acta Crystallogr., Sect. D: Biol. Crystallogr. 50, 760-3.
    • Acta Crystallogr., Sect. D: Biol. Crystallogr , vol.50 , pp. 760-763
  • 37
    • 0037237545 scopus 로고    scopus 로고
    • Automated main-chain model building by template matching and iterative fragment extension
    • Terwilliger T.C. Automated main-chain model building by template matching and iterative fragment extension. Acta Crystallogr., Sect. D: Biol. Crystallogr. 59 (2003) 38-44
    • (2003) Acta Crystallogr., Sect. D: Biol. Crystallogr. , vol.59 , pp. 38-44
    • Terwilliger, T.C.1
  • 39
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones T.A., Zou J.Y., Cowan S.W., and Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr., Sect A: Found. Crystallogr. 47 Pt 2 (1991) 110-119
    • (1991) Acta Crystallogr., Sect A: Found. Crystallogr. , vol.47 , Issue.PART 2 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 42
    • 13444307044 scopus 로고    scopus 로고
    • Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    • Krissinel E., and Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr., Sect. D: Biol. Crystallogr. 60 (2004) 2256-2268
    • (2004) Acta Crystallogr., Sect. D: Biol. Crystallogr. , vol.60 , pp. 2256-2268
    • Krissinel, E.1    Henrick, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.