Mitochondrial DNA haplogrouping of the Okhotsk people based on analysis of ancient DNA: An intermediate of gene flow from the continental Sakhalin people to the Ainu

Anthropological Science

Volumn 117, Issue 3, 2009, Pages 171-180

  Sato, Takehiro ^a   Amano, Tetsuya ^a   Ono, Hiroko ^a   Ishida, Hajime ^b   Kodera, Haruto ^c   Matsumura, Hirofumi ^d   Yoneda, Minoru ^e   Masuda, Ryuichi ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b UNIVERSITY OF THE RYUKYUS   (Japan)

^c TSURUMI UNIVERSITY   (Japan)

^d SAPPORO MEDICAL UNIVERSITY   (Japan)

^e UNIVERSITY OF TOKYO   (Japan)

Author keywords

Ancient DNA; Genetic origins; Haplogroup; Mitochondrial DNA; Okhotsk people

Indexed keywords

EID: 77249092026     PISSN: 09187960     EISSN: 13488570     Source Type: Journal    
DOI: 10.1537/ase.081202     Document Type: Article

References (39)

1. Adachi N., Umetsu K., Takigawa W., and Sakaue K. (2004) Phylogenetic analysis of the human ancient mitochondrial DNA. Journal of Archaeological Science, 31: 1339-1348.
2. Adachi N., Sakaue K., Dodo Y., Shinoda K., Umetsu K., Matsumura H., and Ohshima N. (2006) Mitochondrial DNA analysis of the Jomon and Epi-Jomon skeletons in Hokkaido, Japan (second report). DNA Polymorphism, 14: 86-90 (in Japanese).
3. Amano T. (2003a) What is the Okhotsk culture? In: Nomura T., Utagawa Y. (eds.), Epi-Jomon and Okhotsk culture. Hokkaido Shimbun, Sapporo, pp. 110-113 (in Japanese).
4. Amano T. (2003b) The Origin of Bear Ceremonialism. Yuzankaku, Tokyo (in Japanese).
5. Andrews R.M., Kubacka I., Chinnery P.F., Lightowlers R.N., Turnbull D.M., and Howell N. (1999) Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. National Genetics, 23: 147.
6. Bandelt H.J., Lhermo P., Richards M., and Macaulay V. (2001) Detecting errors in mtDNA data by phylogenetic analysis. International Journal of Legal Medicine, 115: 64-69.
7. Derbeneva O.A., Straikovskaya E.B., Wallace D.C., and Sukernik R.I. (2002a) Traces of early Eurasians in the Mansi of northwest Siberia revealed by mitochondrial DNA analysis. American Journal of Human Genetics, 70: 1009-1014.
8. Derbeneva O.A., Straikovskaya E.B., Volodko N.V., Wallace D.C., and Sukernik R.I. (2002b) Mitochondrial DNA variation in Kets and Nganasans and the early peopling of northern Eurasia. Genetika (Russian Journal of Genetics), 38: 1554-1560.
9. Excoffier L., Laval G., and Schneider S. (2005) Arlequin ver. 3.0: An intergrated software pakage for population genetics data analysis. Evolutionary Bioinfomatics Online, 1: 47-50.
10. Gilbert M.T.P., Willerslev E., Hansen A.J., Barnes I., Rudbeck L., Lynnerup N., and Cooper A. (2003) Distribution patterns of postmortem damage in human mitochondrial DNA. American Journal of Human Genetics, 72: 32-47.
11. Hanihara T., Yoshida K., and Ishida H. (2008) Craniometric variation of the Ainu: an assessment of differential gene flow from northeast Asia into northern Japan, Hokkaido. American Journal of Physical Anthropology, 137: 283-293.
12. Horai S., Hayasaka K., Murayama K., Wate N., Koike H., and Nakai N. (1989) DNA amplification from ancient human skeletal remains and their sequence analysis. Proceedings of the Japan Academy, 65 (Series B): 229-233.
13. Horai S., Murayama K., Hayasaka K., Matsubayashi S., Hattori Y., Fucharoen G., Haribara S., Park K.S., Omoto K., and Pan I.H. (1996) Mt DNA polymorphism in East Asian populations, with special reference to the peopling of Japan. American Journal of Human Genetics, 59: 579-590.
14. Ishida H. (1988) Morphological studies of Okhotsk crania from Omisaki, Hokkaido. Journal of Anthropological Society of Nippon, 96: 17-45.
15. Ishida H. (1996) Metric and nonmetric cranial variation of the prehistoric Okhotsk people. Anthropological Science, 104: 233-258.
16. Kivisild T., Tolk H.V., Parik J., Wang Y., Papiha S.S., Bandelt H.J., and Villems R. (2002) The emerging limbs and twigs of the East Asian mtDNA tree. Molecular Biology and Evolution, 19: 1737-1751.
17. Komesu A., Hanihara T., Amano T., Ono H., Yoneda M., Dodo Y., Fukumine T., and Ishida H. (2008) Nonmetric cranial variation in human skeleton remains associated with Okhotsk culture. Anthropological Science, 116: 33-47.
18. Kong Q.P., Yao Y.G., Sun C., Bandelt H.J., Zhu C.L., and Zhang Y.P. (2003) Phylogeny of East Asian mitochondrial DNA lineages inferred from complete sequences. American Journal of Human Genetics, 73: 671-676.
19. Kong Q.P., Bandelt H.J., Sun C., Yao Y.G., Salas A., Achilli A., Wang C.Y., Zhong L., Zhu C.L., Wu S.F., Torroni A., and Zhang Y.P. (2006) Updating the East Asian mtDNA phylogeny: a prerequisite for the identification of pathogenic mutations. Human Molecular Genetics, 15: 2076-2086.
20. Kozintsev A.G. (1990) Ainu, Japanese, their ancestors and neigh-bors: cranioscopic data. Journal of Anthropological Society of Nippon, 98: 247-267.
21. Kozintsev A.G. (1992) Prehistoric and recent populations of Japan: multivariate analysis of cranioscopic data. Arctic Anthropology, 29: 104-111.
22. Maruyama S., Minaguchi K., and Saitou N. (2003) Sequence polymorphisms of the mitochondrial DNA control region and phylogenetic analysis of mtDNA lineages in the Japanese populations. International Journal of Legal Medicine, 117: 218-225.
23. Masuda R., Amano T., and Ono H. (2001) Ancient DNA analysis of brown bear (Ursus arctos) remains from the archeological site of Rebun Island, Hokkaido, Japan. Zoological Science, 18: 741-751.
24. Nei M. and Li W.H. (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Pro-ceedings of the National Academy of Sciences of the United States of America, 76: 5269-5273.
25. Ricaut F.X., Keyser-Tracqui C., Bourgeois J., Crubezy E., and Ludes B. (2004) Genetic analysis of a Sctho-Siberian skele-ton and its implications for ancient Centrak Asian migrations. Human Biology, 76: 109-125.
26. Sambrook J., Fritsch E.F., and Maniatis T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York.
27. Sato T., Amano T., Ono H., Ishida H., Kodera H., Matsumura H., Yoneda M., and Masuda R. (2007) Origins and genetic features of the Okhotsk people, revealed by ancient mitochondrial DNA analysis. Journal of Human Genetics, 52: 618-627.
28. Schurr T.G., Sukernik R.I., Straikovskaya Y.B., and Wallace D.C. (1999) Mitochondrial DNA variation in Koriaks and Itel'men: population replacement in the Okhotsk Sea-Bering Sea region during the Neolithic. American Journal of Physical Anthropology, 108: 1-42.
29. Sneath P.H.A. and Sokal R.R. (1973) Numerical Taxonomy: The Principles and Practice of Numerical Classification. W. H. Freeman, San Fransisco.
30. Straikovskaya E.B., Sukernik R.I., Derbeneva O.A., Volodko N.V., Ruiz-Pesini E., Torroni A., Brown M.D., Lott M.T., Hosseini S.H., Huoponen K., and Wallace D.C. (2005) Mitochondrial DNA diversity in indigenous populations of southern extent of Siberia, and the origins of native American haplogroups. Annals of Human Genetics, 69: 67-89.
31. Straikovskaya Y.B., Sukernik R.I., Schurr T.G., Kogelnik A., and Wallace D.C. (1998) Mitochondrial DNA diversity in Chukchi and Siberian Eskimos: implications for the genetic history of ancient Beringia and the peopling of the New World. American Journal of Human Genetics, 63: 1473-1491.
32. Tajima A., Hayami M., Tokunaga K., Juji T., Matsuo M., Marzuki S., Omoto K., and Horai S. (2004) Genetic origins of the Ainu inferred from combined DNA analyses of maternal and paternal lineages. Journal of Human Genetics, 49: 187-193.
33. Umetsu K. and Yuasa I. (2005) Recent progress in mitochondrial DNA analysis. Legal Medicine, 7: 259-262.
34. Umetsu K., Tanaka M., Yuasa I., Adachi N., Miyoshi A., Kashimura S., Park K.S., Wei Y.H., Watanabe G., and Osawa M. (2005) Multiplex amplified product-length polymorphism analysis of 36 mitochondrial single-nucleptide polymorphisms for haplogrouping of East Asian populations. Electrophoresis, 26: 91-98.
35. Utagawa Y. (2002) The world of the Okhotsk "bear festival." In: Nishiaki Y., Utagawa Y. (eds.), Another World of the North. The University of Tokyo Press, Tokyo, pp. 106-113 (in Japanese).
36. Walsh P.S., Metzger D.A., and Higuchi R. (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques, 10: 506-513.
37. Yao Y.G., Kong Q.P., Bandelt H.J., Kivisild T., and Zhang Y.P. (2002) Phylogenetic differentiation of mitochondrial DNA in Han Chinese. American Journal of Human Genetics, 70: 635-651.
38. Yoneda M., Shibata Y., Tanaka A., Uehiro T., Morita M., Uchida M., Kobayashi T., Kobayashi C., Suzuki R., Miyamoto K., Hancock B., Debden C., and Emonds J.S. (2004) AMS 14C measurement and preparative techniques at NIES-TERRA. Nuclear Instruments & Methods in Physics Research Section B, 223-224: 116-123.
39. Yoneda M., Uno H., Shibata Y., Suzuki R., Kumamoto Y., Yoshida K., Sasaki T., Suzuki A., and Kawahata H. (2007) Radiocarbon marine reservoir ages in the western Pacific estimated by pre-bomb molluscan shells. Nuclear Instruments & Methods in Physics Research Section B, 259: 432-437.