메뉴 건너뛰기




Volumn 132, Issue 7, 2010, Pages

Thermal nanostructure: An order parameter multiscale ensemble approach

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC CONFIGURATION; ATOMIC SCALE; AVERAGE FORCE; COWPEA CHLOROTIC MOTTLE VIRUS; EFFICIENT ALGORITHM; FREE-ENERGY LANDSCAPE; HIGH ENERGY; INTERATOMIC FORCES; MULTI SCALE ANALYSIS; MULTISCALE TECHNIQUE; MULTISCALES; ORDER PARAMETER; PROBABILITY DENSITIES; QUASI-EQUILIBRIUM; SLOW DYNAMICS; STOCHASTIC EQUATIONS; THERAPEUTIC AGENTS; THERMAL STRUCTURE;

EID: 77149179385     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3316793     Document Type: Article
Times cited : (25)

References (41)
  • 1
    • 59849121676 scopus 로고    scopus 로고
    • JCCHDD 0192-8651,. 10.1002/jcc.21071
    • Y. Miao and P. J. Ortoleva, J. Comput. Chem. JCCHDD 0192-8651 30, 423 (2009). 10.1002/jcc.21071
    • (2009) J. Comput. Chem. , vol.30 , pp. 423
    • Miao, Y.1    Ortoleva, P.J.2
  • 6
    • 58149183659 scopus 로고    scopus 로고
    • PHYADX 0378-4371,. 10.1016/j.physa.2008.11.008
    • Z. Shreif and P. Ortoleva, Physica A PHYADX 0378-4371 388, 593 (2009). 10.1016/j.physa.2008.11.008
    • (2009) Physica A , vol.388 , pp. 593
    • Shreif, Z.1    Ortoleva, P.2
  • 7
    • 0016814686 scopus 로고
    • JGVIAY 0022-1317,. 10.1099/0022-1317-28-1-147
    • K. W. Adolph, J. Gen. Virol. JGVIAY 0022-1317 28, 147 (1975). 10.1099/0022-1317-28-1-147
    • (1975) J. Gen. Virol. , vol.28 , pp. 147
    • Adolph, K.W.1
  • 8
    • 0031588020 scopus 로고    scopus 로고
    • Quasi-equivalent viruses: A paradigm for protein assemblies
    • DOI 10.1006/jmbi.1997.1068
    • J. E. Johnson and J. A. Speir, J. Mol. Biol. JMOBAK 0022-2836 269, 665 (1997). 10.1006/jmbi.1997.1068 (Pubitemid 27280836)
    • (1997) Journal of Molecular Biology , vol.269 , Issue.5 , pp. 665-675
    • Johnson, J.E.1    Speir, J.A.2
  • 11
    • 0035811243 scopus 로고    scopus 로고
    • Structural transitions of satellite tobacco mosaic virus particles
    • DOI 10.1006/viro.2000.0914
    • Y. G. Kuznetsov, S. B. Larson, J. Day, A. Greenwood, and A. McPherson, Virology VIRLAX 0042-6822 284, 223 (2001). 10.1006/viro.2000.0914 (Pubitemid 32523224)
    • (2001) Virology , vol.284 , Issue.2 , pp. 223-234
    • Kuznetsov, Y.G.1    Larson, S.B.2    Day, J.3    Greenwood, A.4    McPherson, A.5
  • 12
    • 35649005376 scopus 로고    scopus 로고
    • The disassembly, reassembly and stability of CCMV protein capsids
    • DOI 10.1016/j.jviromet.2007.07.020, PII S0166093407002868
    • L. Lavelle, J. P. Michel, and M. Gingery, J. Virol. Methods JVMEDH 0166-0934 146, 311 (2007). 10.1016/j.jviromet.2007.07.020 (Pubitemid 350026647)
    • (2007) Journal of Virological Methods , vol.146 , Issue.1-2 , pp. 311-316
    • Lavelle, L.1    Michel, J.-P.2    Gingery, M.3
  • 13
    • 33748400386 scopus 로고    scopus 로고
    • JPCHAX 0022-3654,. 10.1021/jp961605d
    • J. E. Shea and I. Oppenheim, J. Phys. Chem. JPCHAX 0022-3654 100, 19035 (1996). 10.1021/jp961605d
    • (1996) J. Phys. Chem. , vol.100 , pp. 19035
    • Shea, J.E.1    Oppenheim, I.2
  • 14
    • 0031361338 scopus 로고    scopus 로고
    • PHYADX 0378-4371,. 10.1016/S0378-4371(97)00407-X
    • J. E. Shea and I. Oppenheim, Physica A PHYADX 0378-4371 247, 417 (1997). 10.1016/S0378-4371(97)00407-X
    • (1997) Physica A , vol.247 , pp. 417
    • Shea, J.E.1    Oppenheim, I.2
  • 15
    • 0032000121 scopus 로고    scopus 로고
    • PHYADX 0378-4371,. 10.1016/S0378-4371(97)00536-0
    • J. E. Shea and I. Oppenheim, Physica A PHYADX 0378-4371 250, 265 (1998). 10.1016/S0378-4371(97)00536-0
    • (1998) Physica A , vol.250 , pp. 265
    • Shea, J.E.1    Oppenheim, I.2
  • 16
    • 79956034221 scopus 로고    scopus 로고
    • BIREBV 0006-3363.
    • T. Schlick, Biol. Reprod. BIREBV 0006-3363 1, 48 (2009).
    • (2009) Biol. Reprod. , vol.1 , pp. 48
    • Schlick, T.1
  • 17
    • 0001616080 scopus 로고    scopus 로고
    • CHPLBC 0009-2614,. 10.1016/S0009-2614(99)01123-9
    • Y. Sugita and Y. Okamoto, Chem. Phys. Lett. CHPLBC 0009-2614 314, 141 (1999). 10.1016/S0009-2614(99)01123-9
    • (1999) Chem. Phys. Lett. , vol.314 , pp. 141
    • Sugita, Y.1    Okamoto, Y.2
  • 19
    • 3042720018 scopus 로고    scopus 로고
    • Equation-free: The computer-aided analysis of complex multiscale systems
    • DOI 10.1002/aic.10106
    • I. G. Kevrekidis, C. W. Gear, and G. Hummer, AIChE J. AICEAC 0001-1541 50, 1346 (2004). 10.1002/aic.10106 (Pubitemid 38856761)
    • (2004) AIChE Journal , vol.50 , Issue.7 , pp. 1346-1355
    • Kevrekidis, I.G.1    Gear, C.W.2    Hummer, G.3
  • 22
    • 14544291957 scopus 로고    scopus 로고
    • A multiscale coarse-graining method for biomolecular systems
    • DOI 10.1021/jp044629q
    • S. Izvekov and G. A. Voth, J. Phys. Chem. B JPCBFK 1089-5647 109, 2469 (2005). 10.1021/jp044629q (Pubitemid 40304419)
    • (2005) Journal of Physical Chemistry B , vol.109 , Issue.7 , pp. 2469-2473
    • Izvekov, S.1    Voth, G.A.2
  • 23
    • 33644929350 scopus 로고    scopus 로고
    • Multiscale coarse graining of liquid-state systems
    • DOI 10.1063/1.2038787, 134105
    • S. Izvekov and G. A. Voth, J. Chem. Phys. JCPSA6 0021-9606 123, 134105 (2005). 10.1063/1.2038787 (Pubitemid 41434694)
    • (2005) Journal of Chemical Physics , vol.123 , Issue.13 , pp. 1-13
    • Izvekov, S.1    Voth, G.A.2
  • 24
    • 0041810451 scopus 로고    scopus 로고
    • PRLTAO 0031-9007,. 10.1103/PhysRevLett.90.238302
    • M. Iannuzzi, A. Laio, and M. Parrinello, Phys. Rev. Lett. PRLTAO 0031-9007 90, 238302 (2003). 10.1103/PhysRevLett.90.238302
    • (2003) Phys. Rev. Lett. , vol.90 , pp. 238302
    • Iannuzzi, M.1    Laio, A.2    Parrinello, M.3
  • 25
    • 34247897186 scopus 로고    scopus 로고
    • A milestoning study of the kinetics of an allosteric transition: Atomically detailed simulations of deoxy Scapharca hemoglobin
    • DOI 10.1529/biophysj.106.101899
    • R. Elber, Biophys. J. BIOJAU 0006-3495 92, L85 (2007). 10.1529/biophysj.106.101899 (Pubitemid 46691100)
    • (2007) Biophysical Journal , vol.92 , Issue.9
    • Elber, R.1
  • 26
    • 0036489115 scopus 로고    scopus 로고
    • New space warping method for the simulation of large-scale macromolecular conformational changes
    • DOI 10.1002/jcc.10040
    • K. Jaqaman and P. J. Ortoleva, J. Comput. Chem. JCCHDD 0192-8651 23, 484 (2002). 10.1002/jcc.10040 (Pubitemid 34227291)
    • (2002) Journal of Computational Chemistry , vol.23 , Issue.4 , pp. 484-491
    • Jaqaman, K.1    Ortoleva, P.J.2
  • 27
    • 33746789370 scopus 로고    scopus 로고
    • All-atom multiscaling and new ensembles for dynamical nanoparticles
    • DOI 10.1063/1.2218838
    • Y. Miao and P. Ortoleva, J. Chem. Phys. JCPSA6 0021-9606 125, 044901 (2006). 10.1063/1.2218838 (Pubitemid 44179437)
    • (2006) Journal of Chemical Physics , vol.125 , Issue.4 , pp. 044901
    • Miao, Y.1    Ortoleva, P.2
  • 28
    • 0000031708 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.480156
    • P. Ahlrichs and B. Dünweg, J. Chem. Phys. JCPSA6 0021-9606 111, 8225 (1999). 10.1063/1.480156
    • (1999) J. Chem. Phys. , vol.111 , pp. 8225
    • Ahlrichs, P.1    Dünweg, B.2
  • 32
    • 0031578972 scopus 로고    scopus 로고
    • CHPLBC 0009-2614,. 10.1016/S0009-2614(97)01198-6
    • U. E. Hansmann, Chem. Phys. Lett. CHPLBC 0009-2614 281, 445 (1997). 10.1016/S0009-2614(97)01198-6
    • (1997) Chem. Phys. Lett. , vol.281 , pp. 445
    • Hansmann, U.E.1
  • 33
    • 33746634779 scopus 로고    scopus 로고
    • Statistical-temperature Monte Carlo and Molecular dynamics algorithms
    • DOI 10.1103/PhysRevLett.97.050601
    • J. Kim, J. E. Straub, and T. Keyes, Phys. Rev. Lett. PRLTAO 0031-9007 97, 050601 (2006). 10.1103/PhysRevLett.97.050601 (Pubitemid 44157406)
    • (2006) Physical Review Letters , vol.97 , Issue.5 , pp. 050601
    • Kim, J.1    Straub, J.E.2    Keyes, T.3
  • 35
    • 4143085014 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.1766014
    • R. Radhakrishnan and T. Schlick, J. Chem. Phys. JCPSA6 0021-9606 121, 2436 (2004). 10.1063/1.1766014
    • (2004) J. Chem. Phys. , vol.121 , pp. 2436
    • Radhakrishnan, R.1    Schlick, T.2
  • 38
    • 33845204189 scopus 로고    scopus 로고
    • Stability and Dynamics of Virus Capsids Described by Coarse-Grained Modeling
    • DOI 10.1016/j.str.2006.10.003, PII S0969212606004023
    • A. Arkhipov, P. L. Freddolino, and K. Schulten, Structure 14, 1767 (2006). 10.1016/j.str.2006.10.003 0969-2126 (Pubitemid 44855625)
    • (2006) Structure , vol.14 , Issue.12 , pp. 1767-1777
    • Arkhipov, A.1    Freddolino, P.L.2    Schulten, K.3
  • 39
    • 33644848399 scopus 로고    scopus 로고
    • Molecular dynamics simulations of the complete satellite tobacco mosaic virus
    • DOI 10.1016/j.str.2005.11.014, PII S0969212606000608
    • P. L. Freddolino, A. Arkhipov, S. Larson, A. McPherson, and K. Schulten, Structure 14, 437 (2006). 10.1016/j.str.2005.11.014 0969-2126 (Pubitemid 43363477)
    • (2006) Structure , vol.14 , Issue.3 , pp. 437-449
    • Freddolino, P.L.1    Arkhipov, A.S.2    Larson, S.B.3    McPherson, A.4    Schulten, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.