메뉴 건너뛰기




Volumn 121, Issue 5, 2004, Pages 2436-2444

Biomolecular free energy profiles by a shooting/umbrella sampling protocol, "BOLAS"

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONAL TRANSITIONS; EQUILIBRIUM DISTRIBUTION; SHOOTING ALGORITHMS; UMBRELLA SAMPLING;

EID: 4143085014     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1766014     Document Type: Article
Times cited : (66)

References (51)
  • 7
    • 4143055102 scopus 로고    scopus 로고
    • note
    • While the problem can be alleviated by using free energy formalisms that are path-independent (Ref. 8) to yield free energy differences between stable states (Ref. 9), insights into transition mechanisms can be lost.
  • 25
    • 4143061807 scopus 로고    scopus 로고
    • note
    • In the limit of short trajectories, i.e., one trajectory step, our scheme can be related to the hybrid Monte Carlo technique. In the long (infinite) trajectory limit, we recover regular Hamiltonian dynamics. Both these extremes have been shown to conserve the equilibrium distribution.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.