Specific DNA-protein interactions on mica investigated by atomic force microscopy

Langmuir

Volumn 26, Issue 4, 2010, Pages 2618-2623

  Pastré, David ^a   Hamon, Loic ^a   Sorel, Isabelle ^a   Le Cam, Eric ^b   Curmi, Patrick A ^a   Piétrement, Olivier ^b  

^a UNIVERSITÉ D EVRY VAL D ESSONNE   (France)

^b CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AFM; CONCENTRATION OF; DNA-PROTEIN INTERACTION; HIGH RESOLUTION; HIGH-RESOLUTION IMAGING; MULTIVALENT SALTS; NANOBIOSCIENCES; NEGATIVELY CHARGED SURFACES; PROTEIN INTERACTION; RESTRICTION ENDONUCLEASES; SITE-SPECIFIC; STRONG BINDING;

ADSORPTION; DNA; GENES; MICA; PROTEINS; SILICATE MINERALS;

ATOMIC FORCE MICROSCOPY;

ALUMINUM SILICATE; DNA; GATATC SPECIFIC TYPE II DEOXYRIBONUCLEASES; GATATC-SPECIFIC TYPE II DEOXYRIBONUCLEASES; MICA; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

ADSORPTION; ARTICLE; ATOMIC FORCE MICROSCOPY; CHEMISTRY; ENZYMOLOGY; ESCHERICHIA COLI; METABOLISM; SURFACE PROPERTY;

ADSORPTION; ALUMINUM SILICATES; DEOXYRIBONUCLEASE ECORI; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA; ESCHERICHIA COLI; MICROSCOPY, ATOMIC FORCE; SURFACE PROPERTIES;

EID: 77149140805     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la902727b     Document Type: Article

References (44)

1. Bustamante, C.; Rivetti, C. Annu. Rev. Biophys. Biomol. Struct. 1996, 25, 395-429.
2. Hansma, H. G. Annu. Rev. Phys. Chem. 2001, 52, 71-92.
3. Sattin, B. D.; Goh, M. C. Biophys. J. 2004, 87, 3430-3436.
4. Ristic, D.; Modesti, M.; van der Heijden, T.; van Noort, J.; Dekker, C.; Kanaar, R.; Wyman, C. Nucleic Acids Res. 2005, 33, 3292-3302.
5. Shi, W. X.; Larson, R. G. Nano Lett. 2005, 5, 2476-2481.
6. Sherratt, M. J.; Bax, D. V.; Chaudhry, S. S.; Hodson, N.; Lu, J. R.; Saravanapavan, P.; Kielty, C. M. Biomaterials 2005, 26, 7192-7206.
7. Sorel, I.; Piétrement, O.; Hamon, L.; Baconnais, S.; Le Cam, E.; Pastré, D. Biochemistry 2006, 45, 14675-14682.
8. Hamon, L.; Pastré, D.; Dupaigne, P.; Le Breton, C.; Le Cam, E.; Piétrement, O. Nucleic Acids Res. 2007, 35, e58.
9. Kienberger, F.; Costa, L. T.; Zhu, R.; Kada, G.; Reithmayer, M.; Chtcheglova, L.; Rankl, C.; Pacheco, A. B.; Thalhammer, S.; Pastushenko, V.; Heckl, W. M.; Blaas, D.; Hinterdorfer, P. Biomaterials 2007, 28, 2403-2411.
10. Pastré, D.; Hamon, L.; Mechulam, A.; Sorel, I.; Baconnais, S.; Curmi, P. A.; Le Cam, E.; Piétrement, O. Biomacromolecules 2007, 8, 3712-3717.
11. Bulyk, M. L.; Gentalen, E.; Lockhart, D. J.; Church, G. M. Nat. Biotechnol. 1999, 17, 573-577.
12. Liu, Q.; Wang, L.; Frutos, A. G.; Condon, A. E.; Corn, R. M.; Smith, L. M. Nature 2000, 403, 175-179.
13. Oh, S. J.; Hong, B. J.; Choi, K. Y.; Park, J. W. OMICS 2006, 10, 327-343.
14. Thomson, N. H.; Kasas, S.; Smith, B. L.; Hansma, H. G.; Hansma, P. K. Langmuir 1996, 12, 5905-5908.
15. Hansma, H. G.; Laney, D. E. Biophys. J. 1996, 70, 1933-1939.
16. Pastré, D.; Piétrement, O.; Fusil, S.; Landousy, F.; Jeusset, J.; David, M. O.; Hamon, L.; Le Cam, E.; Zozime, A. Biophys. J. 2003, 85, 2507-2518.
17. Pastré, D.; Hamon, L.; Landousy, F.; Sorel, I.; David, M. O.; Zozime, A.; Le Cam, E.; Piéltrement, O. Langmuir 2006, 22, 6651-6660.
18. Hansma, H. G.; Browne, K. A.; Bezanilla, M.; Bruice, T. C. Biochemistry 1994, 33, 8436-8441.
19. Abdelhady, H. G.; Allen, S.; Davies, M. C.; Roberts, C. J.; Tendler, S. J. B.; Williams, P. M. Nucleic Acids Res. 2003, 31, 4001-4005.
20. Kasas, S.; Thomson, N. H.; Smith, B. L.; Hansma, H. G.; Zhu, X.; Guthold, M.; Bustamante, C.; Kool, E. T.; Kashlev, M.; Hansma, P. K. Biochemistry 1997, 36, 461-468.
21. Bustamante, C.; Guthold, M.; Zhu, X.; Yang, G. J. Biol. Chem. 1999, 274, 16665-16668.
22. Hansma, H. G.; Golan, R.; Hsieh, W.; Daubendiek, S. L.; Kool, E. T. J. Struct. Biol. 1999, 127, 240-247.
23. Ellis, D. J.; Dryden, D. T.; Berge, T.; Edwardson, J. M.; Henderson, R. M. Nat. Struct. Biol. 1999, 6, 15-17.
24. Lorenz, M. G.; Wackernagel, W. Appl. Environ. Microbiol. 1987, 53, 2948-2952.
25. Romanowski, G.; Lorenz, M. G.; Wackernagel, W. Appl. Environ. Microbiol. 1991, 57, 1057-1061.
26. Demaneche, S.; Jocteur-Monrozier, L.; Quiquampoix, H.; Simonet, P. Appl. Environ. Microbiol. 2001, 67, 293-299.
27. Pastré, D.; Piétrement, O.; Zozime, A.; Le Cam, E. Biopolymers 2005, 77, 53-62.
28. Piétrement, O.; Pastré, D.; Landousy, F.; David, M. O.; Fusil, S.; Hamon, L.; Zozime, A.; Le Cam, E. Eur. Biophys. J. 2005, 34, 200-207.
29. Ellis, J. S.; Abdelhady, H. G.; Allen, S.; Davies, M. C.; Roberts, C. J.; Tendler, S. J. B.; Williams, P. M. J. Microsc. 2004, 215, 297-301.
30. Sushko, M. L.; Shluger, A. L.; Rivetti, C. Langmuir 2006, 22, 7678-7688.
31. Roiter, Y.; Minko, S. J. Phys. Chem. B 2007, 111, 8597-8604.
32. Pingoud, A.; Urbanke, C.; Alves, J.; Ehbrecht, H. J.; Zabeau, M.; Gualerzi, C. Biochemistry 1984, 23, 5697-5703.
33. Tanigawa, M.; Okada, T. In Atomic Force Microscopy of Supercoiled DNA Structure on Mica, 1st International Cyber Congress on Analytical BioSciences, Japan; 1998; pp 19-25.
34. Fang, Y.; Hoh, J. H. J. Am. Chem. Soc. 1999, 120, 8903-8909.
35. Grosberg, A. Y.; Nguyen, T. T.; Shklovskii, B. I. Rev. Mod. Phys. 2002, 74, 329-317.
36. Rubin, R. A.; Modrich, P. Nucleic Acids Res. 1978, 5, 2991-2997.
37. Terry, B. J.; Jack, W. E.; Rubin, R. A.; Modrich, P. J. Biol. Chem. 1983, 258, 9820-9825.
38. van Noort, S. J.; van der Werf, K. O.; Eker, A. P.; Wyman, C.; de Grooth, B. G.; van Hulst, N. F.; Greve, J. Biophys. J. 1998, 74, 2840-2849.
39. Piétrement, O.; Pastré, D.; Fusil, S.; Jeusset, J.; David, M.-O.; Landousy, F.; Hamon, L.; Zozime, A.; Le Cam, E. Langmuir 2003, 19, 2536-2539.
40. Netz, R. R.; Joanny, J.-F. Macromolecules 1999, 32, 9013-9025.
41. Yoshikawa, K.; Takahashi, M.; Vasilevskaya, V. V.; Khokhlov, A. R. Phys. Rev. Lett. 1996, 76, 3029-3031.
42. Takahashi, M.; Yoshikawa, K.; Vasilevskaya, V. V.; Khokhlov, A. R. J. Phys. Chem. B 1997, 101, 9396-9401.
43. Khan, M. O.; Chan, C. Y. Macromolecules 2005, 38, 3017-3025.
44. Odijk, T. Macromolecules 1983, 16, 1340-1344.